NO08G00410, NO08G00410 (gene) Nannochloropsis oceanica

Overview
NameNO08G00410
Unique NameNO08G00410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2157
Alignment locationchr8:162269..164425 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:162269..164425 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G00410 vs. NCBI_GenBank
Match: EWM26477.1 (hypothetical protein Naga_100045g23 [Nannochloropsis gaditana])

HSP 1 Score: 152.9 bits (385), Expect = 3.700e-33
Identity = 258/606 (42.57%), Postives = 310/606 (51.16%), Query Frame = 0 
Query:   53 LSEAPVLDAPSSSAQHEEEVAVGLRQVLSPGSFAGLVMQLADXXXXXXXXXXXXXXXXXXXXXXXKPSATHRETVRHDVQSDKRQRQLSPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVK-APHRDIHVTP---VPSKTTDSTSMVMVGLASHDSESGRSNSSGXSGGSLDFANMSLFSSADFPAVSSLVSSSSCPSSSSAEVFQAPVTSLGLVEGQQAIPPDWQDGVPLDSPSQIFISQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYRPILDSGTHFHYTPASSSLPSSIPPSPRSVVSPAVNSTATPAAWIGGTSGKGGEGIIGGGRVPAAHQHQHSSPPPLSSYPTASTFSTGAV--------------FMQHALSVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEAD----QTGLVRGNYRCGRCGGLKKNHVCPFLYEEDLETQDAGTEVDLMLTQGNPAKGGLPDMPSGLSFHMLTVRPR 637
            L  AP      +S+ HE+EVA  LRQVLS GSFAGL+MQLA           XXXXXXXXXXXXX       E    + + +KR+RQLSP                              +  AP      TP   V    TD T+  M  + S   +SG S+S+    GSL+FANMS FSS +FP   +L+SS S PSSSS      PVTSLGL+EGQ ++  DWQ+GVPLDSPS+IF+SQ                                       XXXXXXXXXXXXXXXXX                           Y P+L++ THF ++ ++     S+ PSP SV + ++   A       G  G   E   G    P   +H     P + + PT +T S+G                         XXXXX                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           T A+     TGL+RG+YRCGRCGG+KKNHVCP+LYEE LE +DAGTEVDL+LT+G+  KGG P+MPSG+SFH LT+R R
Sbjct:   48 LDAAPTSQGTPTSS-HEKEVAAELRQVLSTGSFAGLLMQLA-------GSSGXXXXXXXXXXXXXXXXXXXXEVAVDEGKREKRRRQLSPGLVDQRHLEGQAHSMEGTENPQKIEAPPPLIAFAPRPRTLETPALGVRMAATDHTTSSMQPVVSR-GQSGTSDSA----GSLNFANMSPFSSIEFPIGPTLLSSPSFPSSSSE--MPEPVTSLGLLEGQASMSTDWQEGVPLDSPSEIFMSQGGDGGSGMVMGAPSTFSAPAPTAGDAVDERLVGLASPATXXXXXXXXXXXXXXXXXDLQSGQAEGSGVG--------------YLPVLNADTHFPFSASTPDETLSL-PSP-SVAAASLGPPADRTRDWQGRKGLRSETKTGS---PLGAEH-----PRVITTPTLATLSSGGARXXXXXXXXXXXXXXXXXXXXXXXXXXXMGHLGFNIYYAPPPVPSSLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAAATRPTIDTAAEVAESSTGLLRGSYRCGRCGGMKKNHVCPYLYEEHLERRDAGTEVDLVLTRGDQDKGGRPNMPSGMSFHFLTIRAR 614
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BLAST of NO08G00410 vs. NCBI_GenBank
Match: XP_005854860.1 (hypothetical protein NGA_0381100 [Nannochloropsis gaditana CCMP526] >EKU21503.1 hypothetical protein NGA_0381100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.5 bits (306), Expect = 5.400e-24
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 0 
Query:  567 TGLVRGNYRCGRCGGLKKNHVCPFLYEEDLETQDAGTEVDLMLTQGNPAKGGLPDMPSGLSFHMLTVRPR 637
            TGL+RG+YRCGRCGG+KKNHVCP+LYEE LE +DAGTEVDL+LT+G+  KGG P+MPSG+SFH LT+R R
Sbjct:  308 TGLLRGSYRCGRCGGMKKNHVCPYLYEEHLERRDAGTEVDLVLTRGDQDKGGRPNMPSGMSFHFLTIRAR 377
The following BLAST results are available for this feature:
BLAST of NO08G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26477.13.700e-3342.57hypothetical protein Naga_100045g23 [Nannochlorops... [more]
XP_005854860.15.400e-2474.29hypothetical protein NGA_0381100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00410.1NO08G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581902gene_3368Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00410.1NO08G00410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00410 ID=NO08G00410|Name=NO08G00410|organism=Nannochloropsis oceanica|type=gene|length=2157bp
ATGTCACAAGACAAGCTCAACGTGCGCGACGTGGACACGGGCGGCCAGAG
CAGGACTACCACAACCACCACCACCACCACCACCAGCAGCAATGACAGCA
ACAGCGGCAATAGCAGCAGCAGTAGCGTTGCACATCAGCAATTACACGTC
CAGGTCTTGTCTGAGGCACCGGTCCTCGATGCACCCTCATCGTCCGCGCA
ACACGAGGAAGAGGTGGCGGTCGGGCTGCGTCAAGTCCTCTCCCCAGGCT
CTTTTGCGGGATTAGTCATGCAGCTGGCAGACACGGCCAACAGCAGCAGC
AGCAGCTGTAGCAGCTGTATAGCTGGCAGCAGTGGTGATAGCCATGGATC
CAAGCCATCGGCTACTCATCGCGAGACGGTCCGACATGATGTTCAGAGCG
ATAAGAGGCAGCGACAGCTTTCCCCCAGCACCATGCAGCAGCGGCAACTG
ACGCAGCAGCAGCAACGGCAGCAACCAAACTCGCGCCTGATGGACCCACC
ACCACCTTTGGCCGCTGTAAAAGCCCCGCATAGGGACATTCATGTCACCC
CTGTTCCCTCAAAAACGACCGATTCCACGTCCATGGTGATGGTAGGACTA
GCCTCGCACGACAGTGAGAGTGGGAGAAGCAACAGCAGCGGGAGCAGCGG
GGGCAGTCTGGACTTTGCCAACATGTCCCTGTTCTCCTCCGCCGATTTCC
CCGCCGTTTCCTCCCTTGTGTCCTCCTCCTCGTGTCCTTCCTCCTCGTCG
GCGGAGGTCTTTCAAGCGCCCGTCACGTCGTTGGGGTTGGTGGAGGGGCA
GCAAGCCATTCCTCCCGACTGGCAAGACGGCGTGCCTCTGGACTCTCCAT
CACAGATTTTCATAAGTCAAGGTGGGGCTGGAGGGAGCAGTGGGATGATG
GTAATTACCTCCTCGTCCACCTCCTCCTCCTTGTCCCCCATGCGCGTGGC
TGGTGCTGCAGGGGGCGGTTGGGGAGGTGGGGGAGGAGCAGGGATGATGA
CGAGGATGGCGGTGACGACGCAGGCGCCAGCAGCCGCAACAACGGCCACG
ACGATGATGGAATTACGGACAGGGTTCGAGGATGCCAGTAGTGGAGGAGA
AGGAGGGGGAGGAGGAGTGTACCGGCCCATTTTGGACAGCGGCACTCACT
TTCATTATACACCCGCGAGCTCGTCTTTGCCCAGCTCGATCCCGCCGTCA
CCCCGGTCGGTGGTGTCACCGGCTGTAAATTCTACTGCAACACCGGCTGC
ATGGATTGGTGGAACGAGTGGAAAAGGAGGGGAAGGAATTATTGGTGGTG
GAAGGGTGCCAGCTGCTCACCAACACCAGCATTCCTCTCCTCCTCCCTTG
TCCTCCTACCCCACCGCGAGTACCTTCTCCACCGGCGCAGTCTTCATGCA
GCATGCTCTTTCTGTCCCTCCTGTCTCCCCCCCGCCGCTCCTCACAACGT
CCCCCATTCTCTTCAACGCGTACTATGCCCCTCCACAGCCCTCCTCCTCT
TCTTCTTCCTCAACCTCGGTCACGACCTCCACCATCTCCTCTCCTTCCTC
TTCAACCGCCGTGCCGGCCGCCGCGGCTACGGCCAGTCGTGTGTCAAGGA
CCCGGAGGCGATCTTCCAGCATTACTGCCGGTAGTAGTGGTGCCTCTCTC
GCTGCAGCGGCAGCCGCTGCTGCGGCTGCCGAGACAGAGGCTGACCAAAC
GGGGCTTGTGCGCGGGAATTATCGGTGTGGACGCTGTGGAGGACTTAAGA
AGAACCATGTCTGTCCTTTTTTGTACGAGGAAGACTTGGAGACGCAGGAT
GCAGGGACGGAAGTGGACCTCATGCTTACGCAGGGGAATCCGGCCAAGGG
GGGGTTGCCTGATATGCCATCAGGACTGTCCTTTCATATGTTGACGGTAA
GGCCTCGCTCTTTCCCTCTTACCATGAGGGCGACAGCCGTAATGGGAGAC
GGGGATGCAGGAGGGGCGAGGGGGAAAGGAGGAATGGAGTTGATGGAGAC
ATTTGGACCCTTATCTTCACCTCTTTCAACGGCATTGTCTCCTGTGCTGG
TGCCTCGTCCGGTGCCGCCCTCTGCTTATCTAAATCAGCAACAACAGCCA
CTTTCGCCGTCGCAGCAGCAGCAGCAGCGACAGAAGAATCAGCAGCAGCA
GCGGTAG
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protein sequence of NO08G00410.1

>NO08G00410.1-protein ID=NO08G00410.1-protein|Name=NO08G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp
MSQDKLNVRDVDTGGQSRTTTTTTTTTTSSNDSNSGNSSSSSVAHQQLHV
QVLSEAPVLDAPSSSAQHEEEVAVGLRQVLSPGSFAGLVMQLADTANSSS
SSCSSCIAGSSGDSHGSKPSATHRETVRHDVQSDKRQRQLSPSTMQQRQL
TQQQQRQQPNSRLMDPPPPLAAVKAPHRDIHVTPVPSKTTDSTSMVMVGL
ASHDSESGRSNSSGSSGGSLDFANMSLFSSADFPAVSSLVSSSSCPSSSS
AEVFQAPVTSLGLVEGQQAIPPDWQDGVPLDSPSQIFISQGGAGGSSGMM
VITSSSTSSSLSPMRVAGAAGGGWGGGGGAGMMTRMAVTTQAPAAATTAT
TMMELRTGFEDASSGGEGGGGGVYRPILDSGTHFHYTPASSSLPSSIPPS
PRSVVSPAVNSTATPAAWIGGTSGKGGEGIIGGGRVPAAHQHQHSSPPPL
SSYPTASTFSTGAVFMQHALSVPPVSPPPLLTTSPILFNAYYAPPQPSSS
SSSSTSVTTSTISSPSSSTAVPAAAATASRVSRTRRRSSSITAGSSGASL
AAAAAAAAAAETEADQTGLVRGNYRCGRCGGLKKNHVCPFLYEEDLETQD
AGTEVDLMLTQGNPAKGGLPDMPSGLSFHMLTVRPRSFPLTMRATAVMGD
GDAGGARGKGGMELMETFGPLSSPLSTALSPVLVPRPVPPSAYLNQQQQP
LSPSQQQQQRQKNQQQQR*
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Synonyms
Publications