NO08G00410.1, NO08G00410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00410.1
Unique Name	NO08G00410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2157
Alignment location	chr8:162269..164425 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:162269..164425 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO08G00410.1 vs.
Match: EWM26477.1 (hypothetical protein Naga_100045g23 [Nannochloropsis gaditana])

HSP 1 Score: 254.2 bits (648), Expect = 1.200e-63
Identity = 280/743 (37.69%), Postives = 389/743 (52.36%), Query Frame = 0

Query:   22 TTTTTTTSSNDSNSGNSSSSSVA----HQQLHV----QVLSEAPVLDAPSS----SAQHEEEVAVGLRQVLSPGSFAGLVMQLADTANSSSSSCSSCIAGSSGDSHGSKPSATHRETVRHDVQSDKRQRQLSPSTMQQRQLTQQQQRQQ--PNSRLMDPPPPLAAVKAPHRDIHVTP---VPSKTTDSTSMVMVGLASHDSESGRSNSSGSSGGSLDFANMSLFSSADFPAVSSLVSSSSCPSSSSAEVFQAPVTSLGLVEGQQAIPPDWQDGVPLDSPSQIFISQGGAGGSSGMMVITSSSTSSSLSPMRVAGAAGGGWGGGGGAGMMTRMAVTTQAPAAATTATTMMELRTGFEDASSGGEGGGGGVYRPILDSGTHFHYTPASSSLPSSIPPSPRSVVSPAVNSTATPAAWIGGTSGKGGEGIIGGGRVPAAHQHQHSSPPPLSSYPTASTFSTGAVFMQHALSVPPVSPPPLLTTSPIL----------FNAYYAPPQPSSSSSSSTSVTTSTISSPSSSTAVPAAAATASRVSRTRRRSSSITAGSSGASLAAAA---AAAA-------AAETEADQTGLVRGNYRCGRCGGLKKNHVCPFLYEEDLETQDAGTEVDLMLTQGNPAKGGLPDMPSGLSFHMLTVRPRSFPLTMRATAVMGDGDAGGARGKGGMELMETFGPLSSPLSTALSPVLVPRPVP---------PSAYLNQQQQPLSPSQQQQQRQKNQQQQR 719
            T +     ++D + G  +S+       H   HV    Q  S++ +  AP+S    ++ HE+EVA  LRQVLS GSFAGL+MQLA    SS SSC S    S G +  +   +   E    + + +KR+RQLSP  + QR L  Q    +   N + ++ PPPL A  AP      TP   V    TD T+  M  + S   +SG S+S+GS    L+FANMS FSS +FP   +L+SS S PSSSS      PVTSLGL+EGQ ++  DWQ+GVPLDSPS+IF+SQGG GGS   MV+ + ST S+ +P              G A     + + + A + AT+ T+ M   T   D  SG   G G  Y P+L++ THF ++ ++     S+ PSP SV + ++   A       G  G   E   G    P   +H     P + + PT +T S+G    Q      P  P PL   SP+           FN YYAPP   SS  +++  + S   + +++ A  A   + SR SRTRRRS+S++  S+ ++L  AA   AAAA       AAE     TGL+RG+YRCGRCGG+KKNHVCP+LYEE LE +DAGTEVDL+LT+G+  KGG P+MPSG+SFH LT+R R        T +    +         +++    G  S+  S++ +P L+P PVP          SA  +      S  +Q+ Q Q+ Q QQ+
Sbjct:    4 TGSNVQEDTDDLSPGRRTSAEARLKSEHSDPHVYEDTQGSSDSFLDAAPTSQGTPTSSHEKEVAAELRQVLSTGSFAGLLMQLA---GSSGSSCGS----SKGSADSTSKVSASTEVAVDEGKREKRRRQLSPGLVDQRHLEGQAHSMEGTENPQKIEAPPPLIAF-APRPRTLETPALGVRMAATDHTTSSMQPVVSR-GQSGTSDSAGS----LNFANMSPFSSIEFPIGPTLLSSPSFPSSSSE--MPEPVTSLGLLEGQASMSTDWQEGVPLDSPSEIFMSQGGDGGSG--MVMGAPSTFSAPAPT------------AGDAVDERLVGLASPATSTATSTTSTMHTTTTMMDLQSGQAEGSGVGYLPVLNADTHFPFSASTPDETLSL-PSP-SVAAASLGPPADRTRDWQGRKGLRSETKTGS---PLGAEH-----PRVITTPTLATLSSGGARGQGQPRQIPPPPLPLPAASPMATATMMMGHLGFNIYYAPPPVPSSLPAASKASKS--PAGAANRAAAATLTSGSRGSRTRRRSASLSTSSTPSALPVAAIPRAAAATRPTIDTAAEVAESSTGLLRGSYRCGRCGGMKKNHVCPYLYEEHLERRDAGTEVDLVLTRGDQDKGGRPNMPSGMSFHFLTIRARENVKAGFQTLLASTPE---------LDIRMETGIPSTHTSSSSAP-LLPLPVPMSVHGQAMAHSALYDNMNMSRSIQEQEPQGQRRQLQQQ 695

The following BLAST results are available for this feature:

BLAST of NO08G00410.1 vs.

BLAST of NO08G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26477.1	1.200e-63	37.69	hypothetical protein Naga_100045g23 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G00410	NO08G00410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00410.1	NO08G00410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00410.1.cds1	NO08G00410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:162269..164425-
coding sequence from alignment at chr8:162269..164425-

mRNA sequence

>NO08G00410.1 ID=NO08G00410.1|Name=NO08G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp
ATGTCACAAGACAAGCTCAACGTGCGCGACGTGGACACGGGCGGCCAGAG
CAGGACTACCACAACCACCACCACCACCACCACCAGCAGCAATGACAGCA
ACAGCGGCAATAGCAGCAGCAGTAGCGTTGCACATCAGCAATTACACGTC
CAGGTCTTGTCTGAGGCACCGGTCCTCGATGCACCCTCATCGTCCGCGCA
ACACGAGGAAGAGGTGGCGGTCGGGCTGCGTCAAGTCCTCTCCCCAGGCT
CTTTTGCGGGATTAGTCATGCAGCTGGCAGACACGGCCAACAGCAGCAGC
AGCAGCTGTAGCAGCTGTATAGCTGGCAGCAGTGGTGATAGCCATGGATC
CAAGCCATCGGCTACTCATCGCGAGACGGTCCGACATGATGTTCAGAGCG
ATAAGAGGCAGCGACAGCTTTCCCCCAGCACCATGCAGCAGCGGCAACTG
ACGCAGCAGCAGCAACGGCAGCAACCAAACTCGCGCCTGATGGACCCACC
ACCACCTTTGGCCGCTGTAAAAGCCCCGCATAGGGACATTCATGTCACCC
CTGTTCCCTCAAAAACGACCGATTCCACGTCCATGGTGATGGTAGGACTA
GCCTCGCACGACAGTGAGAGTGGGAGAAGCAACAGCAGCGGGAGCAGCGG
GGGCAGTCTGGACTTTGCCAACATGTCCCTGTTCTCCTCCGCCGATTTCC
CCGCCGTTTCCTCCCTTGTGTCCTCCTCCTCGTGTCCTTCCTCCTCGTCG
GCGGAGGTCTTTCAAGCGCCCGTCACGTCGTTGGGGTTGGTGGAGGGGCA
GCAAGCCATTCCTCCCGACTGGCAAGACGGCGTGCCTCTGGACTCTCCAT
CACAGATTTTCATAAGTCAAGGTGGGGCTGGAGGGAGCAGTGGGATGATG
GTAATTACCTCCTCGTCCACCTCCTCCTCCTTGTCCCCCATGCGCGTGGC
TGGTGCTGCAGGGGGCGGTTGGGGAGGTGGGGGAGGAGCAGGGATGATGA
CGAGGATGGCGGTGACGACGCAGGCGCCAGCAGCCGCAACAACGGCCACG
ACGATGATGGAATTACGGACAGGGTTCGAGGATGCCAGTAGTGGAGGAGA
AGGAGGGGGAGGAGGAGTGTACCGGCCCATTTTGGACAGCGGCACTCACT
TTCATTATACACCCGCGAGCTCGTCTTTGCCCAGCTCGATCCCGCCGTCA
CCCCGGTCGGTGGTGTCACCGGCTGTAAATTCTACTGCAACACCGGCTGC
ATGGATTGGTGGAACGAGTGGAAAAGGAGGGGAAGGAATTATTGGTGGTG
GAAGGGTGCCAGCTGCTCACCAACACCAGCATTCCTCTCCTCCTCCCTTG
TCCTCCTACCCCACCGCGAGTACCTTCTCCACCGGCGCAGTCTTCATGCA
GCATGCTCTTTCTGTCCCTCCTGTCTCCCCCCCGCCGCTCCTCACAACGT
CCCCCATTCTCTTCAACGCGTACTATGCCCCTCCACAGCCCTCCTCCTCT
TCTTCTTCCTCAACCTCGGTCACGACCTCCACCATCTCCTCTCCTTCCTC
TTCAACCGCCGTGCCGGCCGCCGCGGCTACGGCCAGTCGTGTGTCAAGGA
CCCGGAGGCGATCTTCCAGCATTACTGCCGGTAGTAGTGGTGCCTCTCTC
GCTGCAGCGGCAGCCGCTGCTGCGGCTGCCGAGACAGAGGCTGACCAAAC
GGGGCTTGTGCGCGGGAATTATCGGTGTGGACGCTGTGGAGGACTTAAGA
AGAACCATGTCTGTCCTTTTTTGTACGAGGAAGACTTGGAGACGCAGGAT
GCAGGGACGGAAGTGGACCTCATGCTTACGCAGGGGAATCCGGCCAAGGG
GGGGTTGCCTGATATGCCATCAGGACTGTCCTTTCATATGTTGACGGTAA
GGCCTCGCTCTTTCCCTCTTACCATGAGGGCGACAGCCGTAATGGGAGAC
GGGGATGCAGGAGGGGCGAGGGGGAAAGGAGGAATGGAGTTGATGGAGAC
ATTTGGACCCTTATCTTCACCTCTTTCAACGGCATTGTCTCCTGTGCTGG
TGCCTCGTCCGGTGCCGCCCTCTGCTTATCTAAATCAGCAACAACAGCCA
CTTTCGCCGTCGCAGCAGCAGCAGCAGCGACAGAAGAATCAGCAGCAGCA
GCGGTAG

protein sequence of NO08G00410.1

>NO08G00410.1-protein ID=NO08G00410.1-protein|Name=NO08G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp
MSQDKLNVRDVDTGGQSRTTTTTTTTTTSSNDSNSGNSSSSSVAHQQLHV
QVLSEAPVLDAPSSSAQHEEEVAVGLRQVLSPGSFAGLVMQLADTANSSS
SSCSSCIAGSSGDSHGSKPSATHRETVRHDVQSDKRQRQLSPSTMQQRQL
TQQQQRQQPNSRLMDPPPPLAAVKAPHRDIHVTPVPSKTTDSTSMVMVGL
ASHDSESGRSNSSGSSGGSLDFANMSLFSSADFPAVSSLVSSSSCPSSSS
AEVFQAPVTSLGLVEGQQAIPPDWQDGVPLDSPSQIFISQGGAGGSSGMM
VITSSSTSSSLSPMRVAGAAGGGWGGGGGAGMMTRMAVTTQAPAAATTAT
TMMELRTGFEDASSGGEGGGGGVYRPILDSGTHFHYTPASSSLPSSIPPS
PRSVVSPAVNSTATPAAWIGGTSGKGGEGIIGGGRVPAAHQHQHSSPPPL
SSYPTASTFSTGAVFMQHALSVPPVSPPPLLTTSPILFNAYYAPPQPSSS
SSSSTSVTTSTISSPSSSTAVPAAAATASRVSRTRRRSSSITAGSSGASL
AAAAAAAAAAETEADQTGLVRGNYRCGRCGGLKKNHVCPFLYEEDLETQD
AGTEVDLMLTQGNPAKGGLPDMPSGLSFHMLTVRPRSFPLTMRATAVMGD
GDAGGARGKGGMELMETFGPLSSPLSTALSPVLVPRPVPPSAYLNQQQQP
LSPSQQQQQRQKNQQQQR*

mRNA from alignment at chr8:162269..164425-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G00410.1 ID=NO08G00410.1|Name=NO08G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp|location=Sequence derived from alignment at chr8:162269..164425- (Nannochloropsis oceanica)
ATGTCACAAGACAAGCTCAACGTGCGCGACGTGGACACGGGCGGCCAGAG
CAGGACTACCACAACCACCACCACCACCACCACCAGCAGCAATGACAGCA
ACAGCGGCAATAGCAGCAGCAGTAGCGTTGCACATCAGCAATTACACGTC
CAGGTCTTGTCTGAGGCACCGGTCCTCGATGCACCCTCATCGTCCGCGCA
ACACGAGGAAGAGGTGGCGGTCGGGCTGCGTCAAGTCCTCTCCCCAGGCT
CTTTTGCGGGATTAGTCATGCAGCTGGCAGACACGGCCAACAGCAGCAGC
AGCAGCTGTAGCAGCTGTATAGCTGGCAGCAGTGGTGATAGCCATGGATC
CAAGCCATCGGCTACTCATCGCGAGACGGTCCGACATGATGTTCAGAGCG
ATAAGAGGCAGCGACAGCTTTCCCCCAGCACCATGCAGCAGCGGCAACTG
ACGCAGCAGCAGCAACGGCAGCAACCAAACTCGCGCCTGATGGACCCACC
ACCACCTTTGGCCGCTGTAAAAGCCCCGCATAGGGACATTCATGTCACCC
CTGTTCCCTCAAAAACGACCGATTCCACGTCCATGGTGATGGTAGGACTA
GCCTCGCACGACAGTGAGAGTGGGAGAAGCAACAGCAGCGGGAGCAGCGG
GGGCAGTCTGGACTTTGCCAACATGTCCCTGTTCTCCTCCGCCGATTTCC
CCGCCGTTTCCTCCCTTGTGTCCTCCTCCTCGTGTCCTTCCTCCTCGTCG
GCGGAGGTCTTTCAAGCGCCCGTCACGTCGTTGGGGTTGGTGGAGGGGCA
GCAAGCCATTCCTCCCGACTGGCAAGACGGCGTGCCTCTGGACTCTCCAT
CACAGATTTTCATAAGTCAAGGTGGGGCTGGAGGGAGCAGTGGGATGATG
GTAATTACCTCCTCGTCCACCTCCTCCTCCTTGTCCCCCATGCGCGTGGC
TGGTGCTGCAGGGGGCGGTTGGGGAGGTGGGGGAGGAGCAGGGATGATGA
CGAGGATGGCGGTGACGACGCAGGCGCCAGCAGCCGCAACAACGGCCACG
ACGATGATGGAATTACGGACAGGGTTCGAGGATGCCAGTAGTGGAGGAGA
AGGAGGGGGAGGAGGAGTGTACCGGCCCATTTTGGACAGCGGCACTCACT
TTCATTATACACCCGCGAGCTCGTCTTTGCCCAGCTCGATCCCGCCGTCA
CCCCGGTCGGTGGTGTCACCGGCTGTAAATTCTACTGCAACACCGGCTGC
ATGGATTGGTGGAACGAGTGGAAAAGGAGGGGAAGGAATTATTGGTGGTG
GAAGGGTGCCAGCTGCTCACCAACACCAGCATTCCTCTCCTCCTCCCTTG
TCCTCCTACCCCACCGCGAGTACCTTCTCCACCGGCGCAGTCTTCATGCA
GCATGCTCTTTCTGTCCCTCCTGTCTCCCCCCCGCCGCTCCTCACAACGT
CCCCCATTCTCTTCAACGCGTACTATGCCCCTCCACAGCCCTCCTCCTCT
TCTTCTTCCTCAACCTCGGTCACGACCTCCACCATCTCCTCTCCTTCCTC
TTCAACCGCCGTGCCGGCCGCCGCGGCTACGGCCAGTCGTGTGTCAAGGA
CCCGGAGGCGATCTTCCAGCATTACTGCCGGTAGTAGTGGTGCCTCTCTC
GCTGCAGCGGCAGCCGCTGCTGCGGCTGCCGAGACAGAGGCTGACCAAAC
GGGGCTTGTGCGCGGGAATTATCGGTGTGGACGCTGTGGAGGACTTAAGA
AGAACCATGTCTGTCCTTTTTTGTACGAGGAAGACTTGGAGACGCAGGAT
GCAGGGACGGAAGTGGACCTCATGCTTACGCAGGGGAATCCGGCCAAGGG
GGGGTTGCCTGATATGCCATCAGGACTGTCCTTTCATATGTTGACGGTAA
GGCCTCGCTCTTTCCCTCTTACCATGAGGGCGACAGCCGTAATGGGAGAC
GGGGATGCAGGAGGGGCGAGGGGGAAAGGAGGAATGGAGTTGATGGAGAC
ATTTGGACCCTTATCTTCACCTCTTTCAACGGCATTGTCTCCTGTGCTGG
TGCCTCGTCCGGTGCCGCCCTCTGCTTATCTAAATCAGCAACAACAGCCA
CTTTCGCCGTCGCAGCAGCAGCAGCAGCGACAGAAGAATCAGCAGCAGCA
GCGGTAG

Coding sequence (CDS) from alignment at chr8:162269..164425-

>NO08G00410.1 ID=NO08G00410.1|Name=NO08G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=2157bp|location=Sequence derived from alignment at chr8:162269..164425- (Nannochloropsis oceanica)
ATGTCACAAGACAAGCTCAACGTGCGCGACGTGGACACGGGCGGCCAGAG
CAGGACTACCACAACCACCACCACCACCACCACCAGCAGCAATGACAGCA
ACAGCGGCAATAGCAGCAGCAGTAGCGTTGCACATCAGCAATTACACGTC
CAGGTCTTGTCTGAGGCACCGGTCCTCGATGCACCCTCATCGTCCGCGCA
ACACGAGGAAGAGGTGGCGGTCGGGCTGCGTCAAGTCCTCTCCCCAGGCT
CTTTTGCGGGATTAGTCATGCAGCTGGCAGACACGGCCAACAGCAGCAGC
AGCAGCTGTAGCAGCTGTATAGCTGGCAGCAGTGGTGATAGCCATGGATC
CAAGCCATCGGCTACTCATCGCGAGACGGTCCGACATGATGTTCAGAGCG
ATAAGAGGCAGCGACAGCTTTCCCCCAGCACCATGCAGCAGCGGCAACTG
ACGCAGCAGCAGCAACGGCAGCAACCAAACTCGCGCCTGATGGACCCACC
ACCACCTTTGGCCGCTGTAAAAGCCCCGCATAGGGACATTCATGTCACCC
CTGTTCCCTCAAAAACGACCGATTCCACGTCCATGGTGATGGTAGGACTA
GCCTCGCACGACAGTGAGAGTGGGAGAAGCAACAGCAGCGGGAGCAGCGG
GGGCAGTCTGGACTTTGCCAACATGTCCCTGTTCTCCTCCGCCGATTTCC
CCGCCGTTTCCTCCCTTGTGTCCTCCTCCTCGTGTCCTTCCTCCTCGTCG
GCGGAGGTCTTTCAAGCGCCCGTCACGTCGTTGGGGTTGGTGGAGGGGCA
GCAAGCCATTCCTCCCGACTGGCAAGACGGCGTGCCTCTGGACTCTCCAT
CACAGATTTTCATAAGTCAAGGTGGGGCTGGAGGGAGCAGTGGGATGATG
GTAATTACCTCCTCGTCCACCTCCTCCTCCTTGTCCCCCATGCGCGTGGC
TGGTGCTGCAGGGGGCGGTTGGGGAGGTGGGGGAGGAGCAGGGATGATGA
CGAGGATGGCGGTGACGACGCAGGCGCCAGCAGCCGCAACAACGGCCACG
ACGATGATGGAATTACGGACAGGGTTCGAGGATGCCAGTAGTGGAGGAGA
AGGAGGGGGAGGAGGAGTGTACCGGCCCATTTTGGACAGCGGCACTCACT
TTCATTATACACCCGCGAGCTCGTCTTTGCCCAGCTCGATCCCGCCGTCA
CCCCGGTCGGTGGTGTCACCGGCTGTAAATTCTACTGCAACACCGGCTGC
ATGGATTGGTGGAACGAGTGGAAAAGGAGGGGAAGGAATTATTGGTGGTG
GAAGGGTGCCAGCTGCTCACCAACACCAGCATTCCTCTCCTCCTCCCTTG
TCCTCCTACCCCACCGCGAGTACCTTCTCCACCGGCGCAGTCTTCATGCA
GCATGCTCTTTCTGTCCCTCCTGTCTCCCCCCCGCCGCTCCTCACAACGT
CCCCCATTCTCTTCAACGCGTACTATGCCCCTCCACAGCCCTCCTCCTCT
TCTTCTTCCTCAACCTCGGTCACGACCTCCACCATCTCCTCTCCTTCCTC
TTCAACCGCCGTGCCGGCCGCCGCGGCTACGGCCAGTCGTGTGTCAAGGA
CCCGGAGGCGATCTTCCAGCATTACTGCCGGTAGTAGTGGTGCCTCTCTC
GCTGCAGCGGCAGCCGCTGCTGCGGCTGCCGAGACAGAGGCTGACCAAAC
GGGGCTTGTGCGCGGGAATTATCGGTGTGGACGCTGTGGAGGACTTAAGA
AGAACCATGTCTGTCCTTTTTTGTACGAGGAAGACTTGGAGACGCAGGAT
GCAGGGACGGAAGTGGACCTCATGCTTACGCAGGGGAATCCGGCCAAGGG
GGGGTTGCCTGATATGCCATCAGGACTGTCCTTTCATATGTTGACGGTAA
GGCCTCGCTCTTTCCCTCTTACCATGAGGGCGACAGCCGTAATGGGAGAC
GGGGATGCAGGAGGGGCGAGGGGGAAAGGAGGAATGGAGTTGATGGAGAC
ATTTGGACCCTTATCTTCACCTCTTTCAACGGCATTGTCTCCTGTGCTGG
TGCCTCGTCCGGTGCCGCCCTCTGCTTATCTAAATCAGCAACAACAGCCA
CTTTCGCCGTCGCAGCAGCAGCAGCAGCGACAGAAGAATCAGCAGCAGCA
GCGGTAG

Synonyms

Publications