NO08G00180, NO08G00180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G00180 vs. NCBI_GenBank
Match: EWM26514.1 (pre-mrna-splicing factor 18 [Nannochloropsis gaditana]) HSP 1 Score: 232.6 bits (592), Expect = 2.400e-57 Identity = 110/121 (90.91%), Postives = 118/121 (97.52%), Query Frame = 0 Query: 333 METKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKKF 454 METKTQKQCKDYIRPLF+LCK K+VPDGIR NL+EMVD C+AGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRE+ISSSKVAHIMNNEMQRKYLTSIKRLM++AQ+KRPDVDPSKKF Sbjct: 1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKF 121
BLAST of NO08G00180 vs. NCBI_GenBank
Match: CBJ28860.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 226.9 bits (577), Expect = 1.300e-55 Identity = 104/156 (66.67%), Postives = 129/156 (82.69%), Query Frame = 0 Query: 297 LSEHKRLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKK 453 + +K + +FRGLLK WE DLN R + +KR++QGK+ETKTQKQ KDY+RPLF+LCK K +PDGI NL+ M++ + GEFV+A+++Y+ TAIGNAPWPIG+TMVGIHER+GRERISS VAHIMNNE QRKYL S+KRLM Y QDKRPD+ PSKK Sbjct: 283 MERNKLVRTFFRGLLKEWEMDLNARPDHVKRTVQGKLETKTQKQAKDYMRPLFKLCKQKALPDGILNNLVTMINFMKEGEFVRANDIYILTAIGNAPWPIGLTMVGIHERSGRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKK 438
BLAST of NO08G00180 vs. NCBI_GenBank
Match: GAX20497.1 (pre-mRNA-splicing factor 18 [Fistulifera solaris]) HSP 1 Score: 219.9 bits (559), Expect = 1.600e-53 Identity = 98/152 (64.47%), Postives = 129/152 (84.87%), Query Frame = 0 Query: 301 KRLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKK 453 K++Y+Y +GLL+ WE DL QR EE+KRS+ G+ ETKT KQCKDYIRPLF+LCKN+ + + + G++L++V++CQ GEFVKA++ Y+ AIG A WPIG+TMVGIHERTGR +I+S VAH+MN+E+QRKYLTS+KRL+ +AQ KRPDVDPSKK Sbjct: 183 KKIYRYLKGLLREWEDDLMQRPEEVKRSVAGRNETKTLKQCKDYIRPLFKLCKNRTLAEDMMGHILKIVEYCQQGEFVKANDTYIDVAIGRAAWPIGVTMVGIHERTGRSKINSQNVAHVMNSELQRKYLTSVKRLITFAQRKRPDVDPSKK 334
BLAST of NO08G00180 vs. NCBI_GenBank
Match: GAX13508.1 (pre-mRNA-splicing factor 18 [Fistulifera solaris]) HSP 1 Score: 219.9 bits (559), Expect = 1.600e-53 Identity = 98/152 (64.47%), Postives = 129/152 (84.87%), Query Frame = 0 Query: 301 KRLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKK 453 K++Y+Y +GLL+ WE DL QR EE+KRS+ G+ ETKT KQCKDYIRPLF+LCKN+ + + + G++L++V++CQ GEFVKA++ Y+ AIG A WPIG+TMVGIHERTGR +I+S VAH+MN+E+QRKYLTS+KRL+ +AQ KRPDVDPSKK Sbjct: 182 KKIYRYLKGLLREWEDDLMQRPEEVKRSVAGRNETKTLKQCKDYIRPLFKLCKNRTLAEDMMGHILKIVEYCQQGEFVKANDTYIDVAIGRAAWPIGVTMVGIHERTGRSKINSQNVAHVMNSELQRKYLTSVKRLITFAQRKRPDVDPSKK 333
BLAST of NO08G00180 vs. NCBI_GenBank
Match: XP_002180690.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC48098.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 217.6 bits (553), Expect = 7.800e-53 Identity = 97/153 (63.40%), Postives = 126/153 (82.35%), Query Frame = 0 Query: 300 HKRLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKK 453 HKR+YKYF+GLL+ WE DL +RT+++KR++ G+ ETKT KQCKDYI+PLF+LCKN+ + + + N+L++VD CQAGEFV+AH+ Y+ AIG APWPIG+T VGIH RTGR +I S VAH+MN+E+QRKYLTSIKRLM +AQ KR D+ SKK Sbjct: 17 HKRVYKYFKGLLREWEDDLEKRTDDLKRTVGGRNETKTLKQCKDYIKPLFKLCKNRRLEESLLNNILKIVDDCQAGEFVRAHDTYMDVAIGRAPWPIGVTQVGIHSRTGRAKIESQNVAHVMNSELQRKYLTSIKRLMTFAQTKRTDILHSKK 169
BLAST of NO08G00180 vs. NCBI_GenBank
Match: EJK76248.1 (hypothetical protein THAOC_02003 [Thalassiosira oceanica]) HSP 1 Score: 207.6 bits (527), Expect = 8.100e-50 Identity = 93/152 (61.18%), Postives = 125/152 (82.24%), Query Frame = 0 Query: 301 KRLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKK 453 KR+Y+YF+ L++ WE+DL R E +K+S+ G+ ETKT KQCKDYIRPLF+LCK +E+ + ++ +L +V +C+ GEFVKA++ Y+ AIG A WPIG+TMVGIH R+GR RI SS VAH+MN+E+ RKYLTS+KRLM+YAQ+KRPDV+PSKK Sbjct: 227 KRIYRYFKSLIRQWEEDLALRPEAVKKSMAGRNETKTLKQCKDYIRPLFQLCKRRELEEDLQLHLFNIVTYCEQGEFVKANDSYMDVAIGRAAWPIGVTMVGIHARSGRARIESSNVAHVMNSELHRKYLTSVKRLMRYAQNKRPDVNPSKK 378
BLAST of NO08G00180 vs. NCBI_GenBank
Match: XP_008874962.1 (hypothetical protein H310_10370 [Aphanomyces invadans] >ETV96170.1 hypothetical protein H310_10370 [Aphanomyces invadans]) HSP 1 Score: 206.8 bits (525), Expect = 1.400e-49 Identity = 97/155 (62.58%), Postives = 126/155 (81.29%), Query Frame = 0 Query: 298 SEHKRLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKK 453 S+ +Y+YF+ +L WE L QR E +KR+ QGK+ T+T KQCKDYIRPLFRLCK+ EVPD I NLL++V +C++GEFV+A++ Y++ AIGNA WPIG+TMVGIHERTGRE+I+S+K AH+MNNE+QRKYLTS+KRL+ YAQ +V PSKK Sbjct: 169 SDEMIVYRYFKSMLSQWELALGQRPETVKRTAQGKIATRTMKQCKDYIRPLFRLCKHHEVPDDILRNLLDIVRYCESGEFVQANDAYIKMAIGNAAWPIGVTMVGIHERTGREKINSNKQAHVMNNELQRKYLTSVKRLISYAQ-SISNVAPSKK 322
BLAST of NO08G00180 vs. NCBI_GenBank
Match: XP_009037226.1 (hypothetical protein AURANDRAFT_37574 [Aureococcus anophagefferens] >EGB07847.1 hypothetical protein AURANDRAFT_37574 [Aureococcus anophagefferens]) HSP 1 Score: 205.3 bits (521), Expect = 4.000e-49 Identity = 95/159 (59.75%), Postives = 123/159 (77.36%), Query Frame = 0 Query: 294 ATPLSEHKRLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKK 453 A P S+ K++ ++ R LK+WE L R + KR+ QG++ETKT KQCKDYIRPL +LCK +E+ G++ L+EM+D C+AGEFVKA++ Y+ AIGN+ WPIG+T VGIH RT RE + VAH+MNNEMQRKYLTS+KRLMK+AQD+RPDV PSKK Sbjct: 184 AKPPSDFKKIRRWIRRHLKSWEATLVARADAAKRAPQGRVETKTYKQCKDYIRPLVKLCKKRELNAGLKAALVEMIDFCEAGEFVKANDAYILVAIGNSAWPIGVTSVGIHTRTARENVEQKNVAHVMNNEMQRKYLTSMKRLMKFAQDQRPDVAPSKK 342
BLAST of NO08G00180 vs. NCBI_GenBank
Match: XP_002292101.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED90952.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 203.8 bits (517), Expect = 1.200e-48 Identity = 94/151 (62.25%), Postives = 120/151 (79.47%), Query Frame = 0 Query: 302 RLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKK 453 R+Y+YF+ LL+ WE+DL QR++ IKR+ GK ETKT KQCKDYIRPLF++CK +E+ + +LL++V C+ GEFV+AH+ YL AIG A WPIG+TMVGIH R+GRE+I S+ VAH+MN+E RKYLTS+KRLM Y Q KR DVDPSKK Sbjct: 1 RIYRYFKSLLRQWEEDLAQRSDAIKRTAAGKNETKTVKQCKDYIRPLFQMCKRRELEVDMEKHLLKIVTFCEQGEFVRAHDAYLDVAIGRAAWPIGVTMVGIHARSGREKIGSANVAHVMNSEFHRKYLTSVKRLMSYDQRKRVDVDPSKK 151
BLAST of NO08G00180 vs. NCBI_GenBank
Match: XP_012195763.1 (hypothetical protein SPRG_22085 [Saprolegnia parasitica CBS 223.65] >KDO33519.1 hypothetical protein SPRG_22085 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 202.2 bits (513), Expect = 3.400e-48 Identity = 95/155 (61.29%), Postives = 125/155 (80.65%), Query Frame = 0 Query: 298 SEHKRLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKK 453 S+ +++Y++F+ +L WE+ L R E +KRS QGK+ T+T KQCKDYIRPLFRLCK+ VPD I NL+++V C+AGEFV A++ Y++ AIGNA WPIG+TMVGIHERTGRE+I+S+K AH+MNNE+QRKYLTS+KRL+ +AQ DV PSKK Sbjct: 182 SDERKIYRFFKEMLGRWEEALAARPESVKRSAQGKIATRTMKQCKDYIRPLFRLCKSNTVPDDILKNLVDIVGFCKAGEFVSANDSYIKLAIGNAAWPIGVTMVGIHERTGREKINSNKQAHVMNNELQRKYLTSVKRLITFAQ-SIADVLPSKK 335 The following BLAST results are available for this feature:
BLAST of NO08G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G00180 ID=NO08G00180|Name=NO08G00180|organism=Nannochloropsis oceanica|type=gene|length=3677bpback to top protein sequence of NO08G00180.1 >NO08G00180.1-protein ID=NO08G00180.1-protein|Name=NO08G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bpback to top protein sequence of NO08G00180.2 >NO08G00180.2-protein ID=NO08G00180.2-protein|Name=NO08G00180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=455bpback to top Synonyms
Publications
|