NO08G00180.2, NO08G00180.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00180.2
Unique NameNO08G00180.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1887
Alignment locationchr8:68412..72088 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:68412..72088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00180.2 vs.
Match: EWM26514.1 (pre-mrna-splicing factor 18 [Nannochloropsis gaditana])

HSP 1 Score: 232.6 bits (592), Expect = 2.400e-57
Identity = 110/121 (90.91%), Postives = 118/121 (97.52%), Query Frame = 0 
Query:  333 METKTQKQCKDYIRPLFRLCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPSKKF 454
            METKTQKQCKDYIRPLF+LCK K+VPDGIR NL+EMVD C+AGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGRE+ISSSKVAHIMNNEMQRKYLTSIKRLM++AQ+KRPDVDPSKKF
Sbjct:    1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKF 121
The following BLAST results are available for this feature:
BLAST of NO08G00180.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26514.12.400e-5790.91pre-mrna-splicing factor 18 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00180NO08G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00180.2NO08G00180.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00180.2.cds1NO08G00180.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00180.2.cds2NO08G00180.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00180.2.cds3NO08G00180.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00180.2.cds4NO08G00180.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00180.2.cds5NO08G00180.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00180.2.cds6NO08G00180.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00180.2.cds7NO08G00180.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00180.2.cds8NO08G00180.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00180.2.cds9NO08G00180.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00180.2.cds10NO08G00180.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00180.2 ID=NO08G00180.2|Name=NO08G00180.2|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp
GCTCCGAACATCATCGATCAACCACCATCATGCGGCGGCGACGAGGCGGA
GGGAGGAGGTCGCTCCAAGAGCTTACCAGACGCAATAAGGAGGTCTGGAG
GTGGACCTCCGCCAGGCCACCCCCCCCCAACCATCCACAGTCTCCTCCAC
TAAAAATCTCCATGGTCAGGCACGCATCCACCTGAATTTGATCAAATAAT
ACGCTACTTCGATACCTCGGCGACCTCATCAAAATAACCAAAATTACCTC
GACTTCGACTCAACCTAGGCGGCGTCCATTTTTTCCGGTACACCGACGTA
ACCATTCAGCCTCTAAAACACAGACATACCTACAGCCAACGCCCGCCCGC
CCTCGCTAAACTTACAGCGCGCGCATTACCACGCAATAATAAAAGCGTCA
TCATGGAAGCCATCAAGGCGGAGCTGGCTAGGAAAAAGCAGGAGAAACTC
GCGGCTGCCGCGGCATCGGGTGCAAATGGCGGCAGGGGCAGTGCGCCGGG
CGGGACCAAGTATTTTCGACAAGGTGATGTCATTAAAGCCGAGGCGGAGA
AACGGACCGCCGAGCAGGCCCAGCGAGACAGGGAGAGGGAGGAGGCACGA
CGATGCCGGATGGAGCAAGAGGCGCAAGCAAGGGAGTCTCTGCAAAGTCG
CTTGGCACAAAAAACAGCGGAGCTTGCCCTCCAGAAGCAGAAGAAAGAGA
AGGAGGGACGGGAGGGGGGAAAAGAGGGTGGAAAGGGGGATAAGGTGACG
GATAGGGAAGGAGGGAGGAAGGGAGGGAAGGAAGGAGTCGCAGGAGGGAT
AGAGGAGTTGAGGAAGCTGCCATTGCGCGAGGTCCAGAAGCGCCTCCGGG
TATTCGGGCAGCCCATCACCCTGTTCGCCGAGGCTGCGGAGGAGCGCGTG
GTCCGACTGGCCAAGGCGGAGGAGGAGGAGAGGGAGAGGGGCCTGGAGGG
GGAGGATGAGTTCGGGCTGGGGGGGGGCTTCGAAACGAGGAATTCGGCCT
TGTCCAAGCGCGGTCGGAGGGGAGGGGAGGACGGCATGGAGGGCGGAGGG
GAGGAGCAGCAGCGGCGGAAGAAGAAGAAGAATAAGGGAGGGGAGGATGT
GATGCTGGAAGGAGGGGGGGAGGGCGGGGAGGAGGGTGAGGAGTCGTCCT
CATCGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGTGAGGGG
GAGGGGGAGGAGAAACAGCAGGAGCGGGCAGAGAGGAAGGAGAGGCGTCA
ACGAAAACGAGAGGAGGAGAGAAACGCGCCGGCCACGCCCCTCTCGGAGC
ACAAGCGGCTGTACAAATATTTCCGCGGACTCCTCAAGGCCTGGGAGCAA
GACCTCAACCAACGCACTGAAGAAATCAAACGCTCCCTGCAGGGCAAGAT
GGAGACCAAGACGCAAAAGCAGTGCAAGGACTACATCCGCCCCCTCTTTC
GACTCTGCAAAAACAAAGAGGTACCGGACGGCATCCGGGGCAACTTGTTG
GAGATGGTAGACCACTGTCAAGCGGGCGAGTTCGTCAAGGCCCACGAGGT
CTACCTGCGCACGGCCATCGGTAACGCCCCCTGGCCCATCGGCATTACCA
TGGTGGGCATCCACGAACGCACGGGCAGGGAGCGGATTTCCTCCTCTAAG
GTGGCCCACATCATGAACAATGAGATGCAACGGAAGTACCTCACGTCCAT
CAAGCGCCTCATGAAATACGCCCAGGACAAGCGCCCGGATGTGGACCCCA
GCAAGAAATTCTTTTAGCCCGCGCAGCGAGAGAGGAAGAGAGGGGAGGGG
ATGAAGGAAGGAAAGGGGCTGTAAGTAGAGAAAAAGCAGGCAAAAGACTA
AGCCAACGAAAAAAGAATGAAAATCGAGCCTCGAATA
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protein sequence of NO08G00180.2

>NO08G00180.2-protein ID=NO08G00180.2-protein|Name=NO08G00180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MEAIKAELARKKQEKLAAAAASGANGGRGSAPGGTKYFRQGDVIKAEAEK
RTAEQAQRDREREEARRCRMEQEAQARESLQSRLAQKTAELALQKQKKEK
EGREGGKEGGKGDKVTDREGGRKGGKEGVAGGIEELRKLPLREVQKRLRV
FGQPITLFAEAAEERVVRLAKAEEEERERGLEGEDEFGLGGGFETRNSAL
SKRGRRGGEDGMEGGGEEQQRRKKKKNKGGEDVMLEGGGEGGEEGEESSS
SEEEEEEEEEEGEGEGEGEEKQQERAERKERRQRKREEERNAPATPLSEH
KRLYKYFRGLLKAWEQDLNQRTEEIKRSLQGKMETKTQKQCKDYIRPLFR
LCKNKEVPDGIRGNLLEMVDHCQAGEFVKAHEVYLRTAIGNAPWPIGITM
VGIHERTGRERISSSKVAHIMNNEMQRKYLTSIKRLMKYAQDKRPDVDPS
KKFF*
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mRNA from alignment at chr8:68412..72088+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00180.2 ID=NO08G00180.2|Name=NO08G00180.2|organism=Nannochloropsis oceanica|type=mRNA|length=3677bp|location=Sequence derived from alignment at chr8:68412..72088+ (Nannochloropsis oceanica)
GCTCCGAACATCATCGATCAACCACCATCATGCGGCGGCGACGAGGCGGA
GGGAGGAGGTCGCTCCAAGAGCTTACCAGACGCAATAAGGAGGTCTGGAG
GTGGACCTCCGCCAGGCCACCCCCCCCCAACCATCCACAGTCTCCTCCAC
TAAAAATCTCCATGGTCAGGCACGCATCCACCTGAATTTGATCAAATAAT
ACGCTACTTCGATACCTCGGCGACCTCATCAAAATAACCAAAATTACCTC
GACTTCGACTCAACCTAGGCGGCGTCCATTTTTTCCGGTACACCGACGTA
ACCATTCAGCCTCTAAAACACAGACATAGTTAAGTGGAGGGGCCGCATAA
TAGTTGTGTCGGGTTCCTCTTGGCATGTGAATCAAGAGGCCCTGCTTCCA
CCACGTTGCCTTATTTCTTCCTCCCTCCCTGCCCCGCGTCCCTCACAGCC
TACAGCCAACGCCCGCCCGCCCTCGCTAAACTTACAGCGCGCGCATTACC
ACGCAATAATAAAAGCGTCATCATGGAAGCCATCAAGGCGGAGCTGGCTA
GGAAAAAGCAGGAGAAACTCGCGGCTGCCGCGGCATCGGGTACGCCCCAT
GCCCCCTTCCTCCCTCCGCTCCCTCCCTTTTCATCCTTCTCTCCCCGCCC
TTCACCCGTCTATCTTCTTCCCTCGCACAAACTTATGCATATATACAGGT
GCAAATGGCGGCAGGGGCAGTGCGCCGGGCGGGACCAAGTATTTTCGACA
AGGTGATGTCATTAAAGCCGAGGCGGAGAAACGGACCGCCGAGCAGGCCC
AGCGAGACAGGGAGAGGGAGGAGGCACGACGATGCCGGATGGAGGTATGA
GGAGAGAAGAGGGAGGAGAAGGGGGGAGGGGAAGGAAAAGAGGGAAGGAG
TGGCGGAACGGAGAGGGACAAGAGGGAGGGGGAGAGGGGGGGAAGGAGGG
AAAAACGGAGGGAAGGTGGATGATTCAGTGTATGTCTCCTGCCAGCCCCA
AGCTCTTTCTCTGCTCGTTTCTAATAACACACAAACACTCATTCCCATTT
TCCCCTTCCCTCCCTTCTTCTCCTACTTGACAGCAAGAGGCGCAAGCAAG
GGAGTCTCTGCAAAGTCGCTTGGCACAAAAAACAGCGGAGCTTGCCCTCC
AGAAGCAGAAGAAAGAGAAGGAGGGACGGGAGGGGGGAAAAGAGGGTGGA
AAGGGGGATAAGGTGACGGATAGGGAAGGAGGGAGGAAGGGAGGGAAGGA
AGGAGTCGCAGGAGGGATAGAGGAGTTGAGGAAGCTGCCATTGCGCGAGG
TCCAGAAGCGCCTCCGGGTATTCGGGCAGCCCATCACGTACGTACTTCAA
GGGAGGAAGGGGGTTAAGAGTGGGAGGACGGAGGGAGGGAGGGATGGAGT
GAGGGAGGGCGGGCGGGAGGGATGAAGGGAGAGAGAGAGGGGAGTGTGTA
GCACAGGAATGTCATTGTTTTCACCATGGATTGTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCATTCCAACCCTTCCTCCCTCCTTCCCTCCCTCCGTCC
CTCCTCCCTCCCTCCCTCCGTCCCTTCCCAGCCTGTTCGCCGAGGCTGCG
GAGGAGCGCGTGGTCCGACTGGCCAAGGCGGAGGAGGAGGAGAGGGAGAG
GGGCCTGGAGGGGGAGGATGAGTTCGGGCTGGGGGGGGGCTTCGAAACGG
TGAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGAGGAGGGCGATG
TAGATGGTGTAGGGTATCTTTCGACGTCATTTCATTCTTATTCACTCCTC
TTTCTCCCTGCCTGCTTTGATCAATTCGTCCAAAAATTGCGCGAATGATC
CCCAGAGGAATTCGGCCTTGTCCAAGCGCGGTCGGAGGGGAGGGGAGGAC
GGCATGGAGGGCGGAGGGGAGGAGCAGCAGCGGCGGAAGAAGAAGAAGAA
TAAGGGAGGGGAGGATGTGATGCTGGAAGGAGGGGGGGAGGGCGGGGAGG
AGGGTGAGGAGTCGTCCTCATCGGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGGGAGGGTGAGGGGGAGGGGGAGGAGAAACAGCAGGAGCGGGCAGA
GAGGAAGGAGAGGCGTCAACGAAAACGAGAGGAGGAGAGAAACGGTTCGT
GCTCGGGCTGCAGGGTCCCTGTGGGGGAGGGGGAGGAGGAGGAGGAAAAG
GAGGAAAAGGAAGAAAAGGAAGATCCAGAAGAGGAGACCATTCACAGAGA
TCGGCGACTCATCTTCCCTCCCTCCCTCCCTTCCTCTCTCCCTCTTTCCT
CCGTCCTTCCTCAGCGCCGGCCACGCCCCTCTCGGAGCACAAGCGGCTGT
ACAAATATTTCCGCGGACTCCTCAAGGCCTGGGAGCAAGACCTCAACCAA
CGCACTGAAGAAATCAAACGCTCCCTGCAGGTAGGCCCTCCGTTCCTCCT
CCCTCCCTCCCTCCCTCCCTCCTTCATTTCTTCATTCCTTTCTTCATTTT
GTTGTCGTTATTTGTCTGTGGGGGGATGAGGTCTACAGGATCTGTCGGAT
CCCTCGAATTCGCCGTTGCCTTCTCTCCCTCACATCCCTTCCTCCCCTCC
CTTCCTCCCCTCCCTCCCTCCAGGGCAAGATGGAGACCAAGACGCAAAAG
CAGTGCAAGGACTACATCCGCCCCCTCTTTCGACTCTGCAAAAACAAAGA
GGTAGGGAAGGAGGGACCGAAGGGAAGGAGGGAGGGAAAGAGGGAAGGAG
GGAGGAAGATGATAGCACTCTGTTACACACGGCAGGATTGATGGATGAGG
AGGAGGGAGAGAGGGAGAGAGGGAGGGATGGCAGCCTTTTGTCTTTCATT
TCCTCATTACCATCACCGCCACCACCTCCCCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTT
TTTTACAGGTACCGGACGGCATCCGGGGCAACTTGTTGGAGATGGTAGAC
CACTGTCAAGCGGGCGAGTTCGTCAAGGTACGGTACCAAAAACTCTCCCT
CCCACCTCCCCTCCCGCCTCATCCCCTGACATCACACCCACTCACCCCTC
CTTTCTTTCCTCCCTCCCTTGCTCCCCCTCCGGTAGGCCCACGAGGTCTA
CCTGCGCACGGCCATCGGTAACGCCCCCTGGCCCATCGGCATTACCATGG
TGGGCATCCACGAACGCACGGGCAGGGAGCGGATTTCCTCCTCTAAGGTG
AGGGAGGCAGCGAGGGAGGGGACGGAAGGGAAGGGAGAAGGAGGGGAGGA
AGGGAAGGGAGAGGCAGATTTTGGGGCGCTATACCTGGATTTTTACTATG
CTAGGACGATGGTCAGCTTTTTCCAGTTCAATGAATCGATCCTTCCTTCC
CTCCTTCCCTCCCTCCCTCCCTTCCCCATCCCTGTCGTAGGTGGCCCACA
TCATGAACAATGAGATGCAACGGAAGTACCTCACGTCCATCAAGCGCCTC
ATGAAATACGCCCAGGACAAGCGCCCGGATGTGGACCCCAGCAAGAAATT
CTTTTAGCCCGCGCAGCGAGAGAGGAAGAGAGGGGAGGGGATGAAGGAAG
GAAAGGGGCTGTAAGTAGAGAAAAAGCAGGCAAAAGACTAAGCCAACGAA
AAAAGAATGAAAATCGAGCCTCGAATA
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Coding sequence (CDS) from alignment at chr8:68412..72088+

>NO08G00180.2 ID=NO08G00180.2|Name=NO08G00180.2|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at chr8:68412..72088+ (Nannochloropsis oceanica)
ATGGAAGCCATCAAGGCGGAGCTGGCTAGGAAAAAGCAGGAGAAACTCGC
GGCTGCCGCGGCATCGGGTGCAAATGGCGGCAGGGGCAGTGCGCCGGGCG
GGACCAAGTATTTTCGACAAGGTGATGTCATTAAAGCCGAGGCGGAGAAA
CGGACCGCCGAGCAGGCCCAGCGAGACAGGGAGAGGGAGGAGGCACGACG
ATGCCGGATGGAGCAAGAGGCGCAAGCAAGGGAGTCTCTGCAAAGTCGCT
TGGCACAAAAAACAGCGGAGCTTGCCCTCCAGAAGCAGAAGAAAGAGAAG
GAGGGACGGGAGGGGGGAAAAGAGGGTGGAAAGGGGGATAAGGTGACGGA
TAGGGAAGGAGGGAGGAAGGGAGGGAAGGAAGGAGTCGCAGGAGGGATAG
AGGAGTTGAGGAAGCTGCCATTGCGCGAGGTCCAGAAGCGCCTCCGGGTA
TTCGGGCAGCCCATCACCCTGTTCGCCGAGGCTGCGGAGGAGCGCGTGGT
CCGACTGGCCAAGGCGGAGGAGGAGGAGAGGGAGAGGGGCCTGGAGGGGG
AGGATGAGTTCGGGCTGGGGGGGGGCTTCGAAACGAGGAATTCGGCCTTG
TCCAAGCGCGGTCGGAGGGGAGGGGAGGACGGCATGGAGGGCGGAGGGGA
GGAGCAGCAGCGGCGGAAGAAGAAGAAGAATAAGGGAGGGGAGGATGTGA
TGCTGGAAGGAGGGGGGGAGGGCGGGGAGGAGGGTGAGGAGTCGTCCTCA
TCGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGTGAGGGGGA
GGGGGAGGAGAAACAGCAGGAGCGGGCAGAGAGGAAGGAGAGGCGTCAAC
GAAAACGAGAGGAGGAGAGAAACGCGCCGGCCACGCCCCTCTCGGAGCAC
AAGCGGCTGTACAAATATTTCCGCGGACTCCTCAAGGCCTGGGAGCAAGA
CCTCAACCAACGCACTGAAGAAATCAAACGCTCCCTGCAGGGCAAGATGG
AGACCAAGACGCAAAAGCAGTGCAAGGACTACATCCGCCCCCTCTTTCGA
CTCTGCAAAAACAAAGAGGTACCGGACGGCATCCGGGGCAACTTGTTGGA
GATGGTAGACCACTGTCAAGCGGGCGAGTTCGTCAAGGCCCACGAGGTCT
ACCTGCGCACGGCCATCGGTAACGCCCCCTGGCCCATCGGCATTACCATG
GTGGGCATCCACGAACGCACGGGCAGGGAGCGGATTTCCTCCTCTAAGGT
GGCCCACATCATGAACAATGAGATGCAACGGAAGTACCTCACGTCCATCA
AGCGCCTCATGAAATACGCCCAGGACAAGCGCCCGGATGTGGACCCCAGC
AAGAAATTCTTTTAG
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Synonyms
Publications