NO08G00150, NO08G00150 (gene) Nannochloropsis oceanica

Overview
NameNO08G00150
Unique NameNO08G00150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1988
Alignment locationchr8:58482..60469 +

Link to JBrowse

Properties
Property NameValue
DescriptionCell division protein borealin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:58482..60469 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018867Cell_div_borealin
IPR018851Borealin-like_N
Vocabulary: Biological Process
TermDefinition
GO:0051301cell division
Homology
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BLAST of NO08G00150 vs. NCBI_GenBank
Match: EWM26517.1 (Cell division protein borealin [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 1.000e-48
Identity = 149/296 (50.34%), Postives = 162/296 (54.73%), Query Frame = 0 
Query:    1 MGTGRATTGXXXXXXXXXXXXXXXLAKSKAGPEGVLTALSSIKPEELQHVMEEIETEMYSRAKRLRLEAEEHALSLQNAFHVELMKLPKSVRAMSLREFSEQYGEDIRSVMRLAVE---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVMTVMQTPMGVGGGRATRSGRGRVRGMGGVHQTPMMKFDPRLPTTPGIRAPRYGESVLSVNGSPLQVPLPV 294
            MG+GRA TG    XXX        LA+ K G EGVL +LS+IKPEEL+H+M EIE EM +RAKRLR+EAEEHALSLQNAFHVE+MKLPKSVRAMSLREFS+QYGEDIR+VMRLAVE          XXXXXXXXX                                                                                         LVMT+MQTPM  GG R TRS  GRVRGM        M+FDPRLP TPGIRAPRYGESVLSVNGSPLQVPLPV
Sbjct:    1 MGSGRAVTGKKRGXXXGSVLEAATLAEGKVGAEGVLNSLSNIKPEELEHIMVEIEAEMNTRAKRLRVEAEEHALSLQNAFHVEMMKLPKSVRAMSLREFSDQYGEDIRTVMRLAVEEEASRALSQSXXXXXXXXXLRRNKGPVNGTVVKAAPRNRGRSSRIESGKEVGHGERRSTAGASSSHKPARHGVDGVPGRMTTRGSSLCGDAGRGEGMGVRTSVNSSGGLVMTLMQTPM-EGGSRNTRS--GRVRGMAAQTPRMTMRFDPRLPMTPGIRAPRYGESVLSVNGSPLQVPLPV 293
The following BLAST results are available for this feature:
BLAST of NO08G00150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26517.11.000e-4850.34Cell division protein borealin [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009035NSK009035Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00150.1NO08G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|357634gene_3336Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100398g4gene4008Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00150.1NO08G00150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00150 ID=NO08G00150|Name=NO08G00150|organism=Nannochloropsis oceanica|type=gene|length=1988bp
ACAGACACATTCAAGTCAGCAGTGGTACCAGGACAAGACAAATTTCATGG
GCACTGGACGTGCCACCACGGGCAAAAAGCGTGGGGGCGGGGGTGGCTCT
GTGTCGGAGGCGGCGGCGTTGGCAAAGAGCAAGGCAGGACCGGAGGGAGT
CTTGACGGCCTTGTCCAGCATCAAGCCGGAGGAGCTGCAGCACGTCATGG
AGGAAATCGAGACGGAGgtgggttttcagggagatgagaaaagactgcgg
gatggaactgcgaacacccatgacatgctctttttatagtcatcagactc
ctgattccttccctcccccgacgaaccagATGTACTCCCGCGCCAAGCGC
CTCCGTTTGGAAGCGGAGGAGCACGCACTGTCCCTCCAGAATGCTTTTCA
TGTAGAGTTGATGAAGTTGCCCAAGTCAGTGCGGGCCATGTCACTGCGGG
AGTTCTCTGAGCAGTACGGCGAGgtgagggaagggagggagagagggagg
gaaggagggcaagaagaaagcagagtggggggaagatcatcgacagcgcg
aattcttgccatgaggacgtctcttcatcctcccttttctccctccctcc
ctccctatctcagGACATTCGCTCCGTGATGCGCCTGGCCGTGGAAGAAG
AAGCCTCTCGCGCCCTCTCCCAAAGCCACCACAAGCAGCAGCAACGGCAA
CAACAACAGCGGAGGAAAAAGGGTTTGACTGGCACAGTCGTAAAGGCTGC
CCCGCCCACAGCGGGGCGGACGAGTCGAAGCGGTGCAGGAGGGCGAGCAG
CAGGAGCAGCAGGAGCAGGAGCAGTATCACGGTCCTCGGAGGGAGGAGGA
GGGGCCGGTGGAGGAAGGATGTCGACGCGGAGCAGCAGCATCAGCAGCAG
TAGCAACACGGCCAGGAATAGCAGCAACAGTATTCGCACGAGCGTCAACA
GTGGGGGGGGCTTGGTGATGACGGTCATGCAAACCCCTATGGGAGTCGGG
GGGGGGAGGGCGACGCGCTCCGGTCGAGGGCGGGTGCGAGGGATGGGAGG
GGTGCACCAGACCCCCATGATGAAATTCGATCCCCGCCTGCCGACAACTC
CGGGTATTCGGGCGCCGAGGTATGGAGAGAGCGTGCTGAGTGTGAATGGC
TCGCCGCTGCAGGTGCCACTGCCGGTGGACGCCGAAGCGATGGAAGgtag
ggagggagggagggagcgcgggagggagggaggacggggcagtggaaaaa
agcgaatttggagattgccccttgacattttttgttcctatcatcatcgc
atacatatacaatcacatatcaacattttaaattcacaacaacatttaat
taaacgcatatatgcgcgacacagATGAAGACACGGCCGCCTTCACGCGC
GCGGCCCTTGGAGGAGGGCGAGAGGGTGAAGGAGGAGGGAGTGGGTCACC
GTCGTTGATGATTGAGCTGCCCAACGGCGGAGGAGAGAgtaagtacgaaa
ttagctggaatacgaatacaaaggaacaaccattccacttcagcaatctg
acactccctccctcgctccctcgctccctccctcagCTGTGGACATCTTC
AAGGACCCCTCGGCTTTGGCGCACATGGACAGCCAAATGAAGGCGGACGT
GGCGAGTAAGATCGAGAGACTGCAGAGTGGGCTTGCATATGTCTTGCAGC
ATATCGGGGGGGCGTTGCTTGGTGGAGGAGGAGGAGGGGAGGGAGGCGGG
AAGAGCAATTGAAGATGGGAGTGAAACAGAACAAGAGGGTCACAGAAGGC
AAGCGCAAGGTCACAGACATGAGTGTGAGAACTATAGGAAAACCACGACA
AGGAGAACGAGGAAGAGGAAGATGGAGGAAAAGGGGTATCAAAATGAAGG
GAAACTGAAGAAGTAGTGCGAGTATGTGCGTGTGTAGAGCGAGGATGAAC
GATTTGATGAGGAAACTAAAACGAAGGCCTTGGAGCAA
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protein sequence of NO08G00150.1

>NO08G00150.1-protein ID=NO08G00150.1-protein|Name=NO08G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MGTGRATTGKKRGGGGGSVSEAAALAKSKAGPEGVLTALSSIKPEELQHV
MEEIETEMYSRAKRLRLEAEEHALSLQNAFHVELMKLPKSVRAMSLREFS
EQYGEDIRSVMRLAVEEEASRALSQSHHKQQQRQQQQRRKKGLTGTVVKA
APPTAGRTSRSGAGGRAAGAAGAGAVSRSSEGGGGAGGGRMSTRSSSISS
SSNTARNSSNSIRTSVNSGGGLVMTVMQTPMGVGGGRATRSGRGRVRGMG
GVHQTPMMKFDPRLPTTPGIRAPRYGESVLSVNGSPLQVPLPVDAEAMED
EDTAAFTRAALGGGREGEGGGSGSPSLMIELPNGGGETVDIFKDPSALAH
MDSQMKADVASKIERLQSGLAYVLQHIGGALLGGGGGGEGGGKSN*
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Synonyms
Publications