NO07G04270, NO07G04270 (gene) Nannochloropsis oceanica

Overview
NameNO07G04270
Unique NameNO07G04270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length497
Alignment locationchr7:1200897..1201393 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1200897..1201393 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20019.1 (hypothetical protein Naga_102286g1 [Nannochloropsis gaditana])

HSP 1 Score: 167.9 bits (424), Expect = 1.500e-38
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            MLA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA
Sbjct:    1 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 88
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 167.9 bits (424), Expect = 1.500e-38
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            MLA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA
Sbjct:    1 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 88
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20009.1 (hypothetical protein Naga_102330g1 [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 4.300e-38
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            MLA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATA
Sbjct:    1 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATA 88
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20066.1 (hypothetical protein Naga_101980g1 [Nannochloropsis gaditana])

HSP 1 Score: 165.6 bits (418), Expect = 7.400e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            +LA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTS+GEELGKKWATIFQGIGAVLGVAGATA
Sbjct:   82 LLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSNGEELGKKWATIFQGIGAVLGVAGATA 169
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM19993.1 (hypothetical protein Naga_102410g1 [Nannochloropsis gaditana])

HSP 1 Score: 164.5 bits (415), Expect = 1.600e-37
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            MLA LLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRG FSST HTGPGTS+GEELGKKWAT FQGIGAVLGVAGATA
Sbjct:    1 MLALLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGPFSSTAHTGPGTSNGEELGKKWATFFQGIGAVLGVAGATA 88
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20041.1 (hypothetical protein Naga_102106g1 [Nannochloropsis gaditana])

HSP 1 Score: 164.5 bits (415), Expect = 1.600e-37
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            MLA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF ST HTGPGTSSGEELGKKWATIFQGIGAV+GVAGATA
Sbjct:    1 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATIFQGIGAVVGVAGATA 88
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 155.6 bits (392), Expect = 7.600e-35
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 0 
Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATA
Sbjct:   71 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATA 148
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20054.1 (hypothetical protein Naga_102018g1 [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 1.300e-34
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 0 
Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            NHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA
Sbjct:   72 NHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 149
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20114.1 (hypothetical protein Naga_101734g1 [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 1.300e-34
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 0 
Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            NHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA
Sbjct:   75 NHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 152
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20166.1 (hypothetical protein Naga_101373g3 [Nannochloropsis gaditana])

HSP 1 Score: 152.1 bits (383), Expect = 8.400e-34
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 0 
Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            NHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAV+GVAGATA
Sbjct:   82 NHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVVGVAGATA 159
The following BLAST results are available for this feature:
BLAST of NO07G04270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 19
Match NameE-valueIdentityDescription
EWM20019.11.500e-3896.59hypothetical protein Naga_102286g1 [Nannochloropsi... [more]
EWM20057.11.500e-3896.59hypothetical protein Naga_102002g2 [Nannochloropsi... [more]
EWM20009.14.300e-3895.45hypothetical protein Naga_102330g1 [Nannochloropsi... [more]
EWM20066.17.400e-3894.32hypothetical protein Naga_101980g1 [Nannochloropsi... [more]
EWM19993.11.600e-3794.32hypothetical protein Naga_102410g1 [Nannochloropsi... [more]
EWM20041.11.600e-3794.32hypothetical protein Naga_102106g1 [Nannochloropsi... [more]
EWM20060.17.600e-3597.44hypothetical protein Naga_101993g1 [Nannochloropsi... [more]
EWM20054.11.300e-3497.44hypothetical protein Naga_102018g1 [Nannochloropsi... [more]
EWM20114.11.300e-3497.44hypothetical protein Naga_101734g1 [Nannochloropsi... [more]
EWM20166.18.400e-3494.87hypothetical protein Naga_101373g3 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04270.1NO07G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339302gene_2780Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04270.1NO07G04270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04270 ID=NO07G04270|Name=NO07G04270|organism=Nannochloropsis oceanica|type=gene|length=497bp
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGgtgaggtggcgtgtgtgatgcatttagga
agaactcgggcttgttgatggggtgggagtgcgcgttcagtgcacgcgac
cgcagtctggccgaggcatgttgattccccctttgtctgcgtgtctgtgt
cgtttgcgttgcaatctttgttatgcggacaagggcccgcatcaaggtgt
tcacgcacacgcacatccatacacacccaacagGAAAGGGACGCGTGCTG
CGGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGG
AGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGG
TGCTAGGGGTTGCTGGTGCTACCGCTGACAAGGCCCTTGTGTTGTGA
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protein sequence of NO07G04270.1

>NO07G04270.1-protein ID=NO07G04270.1-protein|Name=NO07G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATADKALVL*
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Synonyms
Publications