NO07G04270.1, NO07G04270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04270.1
Unique NameNO07G04270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length285
Alignment locationchr7:1200897..1201393 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1200897..1201393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04270.1 vs.
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 168.7 bits (426), Expect = 8.700e-39
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            MLA LLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATA
Sbjct:   61 MLALLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATA 148
The following BLAST results are available for this feature:
BLAST of NO07G04270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20060.18.700e-3996.59hypothetical protein Naga_101993g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04270NO07G04270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04270.1NO07G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04270.1.cds1NO07G04270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04270.1.cds2NO07G04270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04270.1 ID=NO07G04270.1|Name=NO07G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=285bp
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGACAAGGCCCTTGTGTTGTGA
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protein sequence of NO07G04270.1

>NO07G04270.1-protein ID=NO07G04270.1-protein|Name=NO07G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATADKALVL*
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mRNA from alignment at chr7:1200897..1201393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04270.1 ID=NO07G04270.1|Name=NO07G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=497bp|location=Sequence derived from alignment at chr7:1200897..1201393- (Nannochloropsis oceanica)
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGTGAGGTGGCGTGTGTGATGCATTTAGGA
AGAACTCGGGCTTGTTGATGGGGTGGGAGTGCGCGTTCAGTGCACGCGAC
CGCAGTCTGGCCGAGGCATGTTGATTCCCCCTTTGTCTGCGTGTCTGTGT
CGTTTGCGTTGCAATCTTTGTTATGCGGACAAGGGCCCGCATCAAGGTGT
TCACGCACACGCACATCCATACACACCCAACAGGAAAGGGACGCGTGCTG
CGGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGG
AGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGG
TGCTAGGGGTTGCTGGTGCTACCGCTGACAAGGCCCTTGTGTTGTGA
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Coding sequence (CDS) from alignment at chr7:1200897..1201393-

>NO07G04270.1 ID=NO07G04270.1|Name=NO07G04270.1|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at chr7:1200897..1201393- (Nannochloropsis oceanica)
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGACAAGGCCCTTGTGTTGTGA
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Synonyms
Publications