NO07G04060, NO07G04060 (gene) Nannochloropsis oceanica

Overview
NameNO07G04060
Unique NameNO07G04060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1324
Alignment locationchr7:1131590..1132913 -

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Properties
Property NameValue
DescriptionVesicle transporter GOT1Blike protein putative
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1131590..1132913 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: INTERPRO
TermDefinition
IPR007305Vesicle_transpt_Got1/SFT2
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: CCA26423.1 (vesicle transporter GOT1Blike protein putative [Albugo laibachii Nc14])

HSP 1 Score: 142.9 bits (359), Expect = 7.400e-31
Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 0 
Query:    3 DDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRLGTRSRA 136
            DDN+KIG  LLG+ F F+ +GV+   D+ L+A+GD L L+G+   IG QRTIR FT+R+R  GI+CF  GI+LV +RW  +G++LQ FGF+NLFG+FFP A+A M+  P+L  IL LPGIR V+ RL   +++
Sbjct:    4 DDNRKIGTLLLGIGFGFLLLGVILFFDAALLALGDILLLSGVALTIGFQRTIRFFTRRERWRGILCFLGGIILVMLRWPVVGMVLQSFGFLNLFGSFFPVAVAFMRQMPILGTILNLPGIRSVVDRLAGSTKS 136
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: CCI48435.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 141.7 bits (356), Expect = 1.700e-30
Identity = 69/133 (51.88%), Postives = 96/133 (72.18%), Query Frame = 0 
Query:    3 DDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRLGTRSRA 136
            DDN+KIG  LLG+ F F+ +GV+   D+ L+A+GD L L+G+   IG QRTIR FT+R+R  GI+CF  GI+LV +RW  +G++ Q FGF+NLFG+FFP A+A M+  P+L  IL LPGIR V+ RL   +++
Sbjct:    4 DDNRKIGTLLLGIGFGFLLLGVILFFDAALLALGDILLLSGVALTIGFQRTIRFFTRRERWRGILCFLGGIILVMVRWPVVGMVFQSFGFLNLFGSFFPVAVAFMRQMPILGTILNLPGIRSVVDRLAGSTKS 136
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: XP_008893340.1 (hypothetical protein PPTG_01707 [Phytophthora parasitica INRA-310] >ETI45084.1 hypothetical protein F443_10263 [Phytophthora parasitica P1569] >ETK85059.1 hypothetical protein L915_10038 [Phytophthora parasitica] >ETL38481.1 hypothetical protein L916_09945 [Phytophthora parasitica] >ETL91601.1 hypothetical protein L917_09868 [Phytophthora parasitica] >ETM44895.1 hypothetical protein L914_09919 [Phytophthora parasitica] >ETN21559.1 hypothetical protein PPTG_01707 [Phytophthora parasitica INRA-310] >ETO73747.1 hypothetical protein F444_10362 [Phytophthora parasitica P1976] >ETP14901.1 hypothetical protein F441_10200 [Phytophthora parasitica CJ01A1] >ETP42969.1 hypothetical protein F442_10167 [Phytophthora parasitica P10297] >KUF80787.1 Vesicle transport protein GOT1A [Phytophthora nicotianae] >KUF90812.1 Vesicle transport protein GOT1A [Phytophthora nicotianae])

HSP 1 Score: 140.2 bits (352), Expect = 4.800e-30
Identity = 69/129 (53.49%), Postives = 98/129 (75.97%), Query Frame = 0 
Query:    1 MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRL 130
            MLDDN+KIG  LLGL F F+ +GVL + D+ ++A+GD LFL+G+   IG+ RT+R FT+++R  GI+CF  GILLV +R+  IG+I+Q FGF+NLFG+FFP A+A ++ TPV+ ++L LP I  V+ RL
Sbjct:    1 MLDDNRKIGTLLLGLGFAFLMLGVLMIFDAAMLALGDVLFLSGVALTIGLSRTVRFFTRKERWRGIVCFLGGILLVMLRYPVIGMIIQSFGFLNLFGSFFPVAVAFLRQTPVIGNVLNLPVISEVVDRL 129
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: XP_002903204.1 (vesicle transporter GOT1B-like protein [Phytophthora infestans T30-4] >EEY55628.1 vesicle transporter GOT1B-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 140.2 bits (352), Expect = 4.800e-30
Identity = 67/129 (51.94%), Postives = 99/129 (76.74%), Query Frame = 0 
Query:    1 MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRL 130
            MLDDN+KIG  LLGL F+F+ +GVL + D+ ++A+GD LFL+G+   IG+ RT+R FT+++R  GI+CF  GILLV +R+  IG+I+Q FGF+NLFG+FFP A+A ++ TPV+ ++L LP +  ++ RL
Sbjct:    1 MLDDNRKIGTLLLGLGFMFLMLGVLMIFDAAMLALGDVLFLSGVALTIGLSRTVRFFTRKERWRGIVCFLGGILLVMLRYPVIGMIIQSFGFLNLFGSFFPVALAFLRQTPVIGNVLNLPVVSEIVDRL 129
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: POM74068.1 (Vesicle transporter GOT1B-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 139.0 bits (349), Expect = 1.100e-29
Identity = 69/129 (53.49%), Postives = 97/129 (75.19%), Query Frame = 0 
Query:    1 MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRL 130
            MLDDN+KIG  LLGL F F+ +GVL   D+ ++A+GD LFL+G+   IG+ RT+R FT+++R  GI+CF  GILLV +R+  IG+I+Q FGF+NLFG+FFP A+A ++ TPV+ ++L LP I  V+ RL
Sbjct:    1 MLDDNRKIGTLLLGLGFAFLLLGVLMFFDAAMLALGDVLFLSGVALTIGLSRTVRFFTRKERWRGIVCFLGGILLVMLRYPIIGMIIQSFGFLNLFGSFFPVAVAFLRQTPVIGNVLSLPVISEVVDRL 129
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: POM68558.1 (Vesicle transporter GOT1B-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 137.9 bits (346), Expect = 2.400e-29
Identity = 68/129 (52.71%), Postives = 97/129 (75.19%), Query Frame = 0 
Query:    1 MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRL 130
            MLDDN+KIG  LLGL F F+ +GVL   D+ ++A+GD LFL+G+   IG+ RT+R FT+++R  GI+CF  GILLV +R+  IG+I+Q FGF+NLFG+FFP A+A ++ TPV+ ++L LP I  ++ RL
Sbjct:    1 MLDDNRKIGTLLLGLGFAFLLLGVLMFFDAAMLALGDVLFLSGVALTIGLSRTVRFFTRKERWRGIVCFLGGILLVMLRYPIIGMIIQSFGFLNLFGSFFPVAVAFLRQTPVIGNVLSLPVISELVDRL 129
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: XP_008611152.1 (hypothetical protein SDRG_07112 [Saprolegnia diclina VS20] >EQC35402.1 hypothetical protein SDRG_07112 [Saprolegnia diclina VS20])

HSP 1 Score: 137.1 bits (344), Expect = 4.100e-29
Identity = 69/129 (53.49%), Postives = 95/129 (73.64%), Query Frame = 0 
Query:    1 MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRL 130
            M+DDN+KIG  LLG+ FLF+ +GV+   D+ L+AIGD LFL+GL   IG+ RTI+ FT++DR  GI+CF  GI LV IR+  IG+ +Q FGF+NLFG+FFP A+A ++ TPVL  +L LP I  ++ +L
Sbjct:    1 MMDDNRKIGTLLLGVGFLFLFLGVMLFFDAALLAIGDVLFLSGLAMTIGLSRTIKFFTRKDRWRGIVCFLGGIFLVMIRYPIIGMCVQTFGFLNLFGSFFPVAVAFLRQTPVLGTVLNLPVIGDIVDKL 129
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: OWZ07506.1 (Vesicle transporter GOT1B [Phytophthora megakarya])

HSP 1 Score: 137.1 bits (344), Expect = 4.100e-29
Identity = 68/129 (52.71%), Postives = 96/129 (74.42%), Query Frame = 0 
Query:    1 MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRL 130
            MLDDN+KIG  LLGL   F+ +GVL   DS ++A+GD LFL+G+   IG+ RT+R FT+++R  GI+CF  GILLV +R+  IG+I+Q FGF+NLFG+FFP A+A ++ TPV+ ++L LP I  ++ RL
Sbjct:    1 MLDDNRKIGTLLLGLGLAFLLLGVLMFFDSAMLALGDVLFLSGVALTIGLSRTVRFFTRKERWRGIVCFLGGILLVMLRYPVIGMIIQSFGFLNLFGSFFPVAVAFLRQTPVVGNVLNLPVISEIVDRL 129
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: XP_002903253.1 (vesicle transporter, putative [Phytophthora infestans T30-4] >EEY55677.1 vesicle transporter, putative [Phytophthora infestans T30-4])

HSP 1 Score: 136.7 bits (343), Expect = 5.300e-29
Identity = 66/129 (51.16%), Postives = 98/129 (75.97%), Query Frame = 0 
Query:    1 MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRL 130
            MLDDN+KIG  LLGL F+F+ +GVL + D+ ++A+GD LFL+G+   IG+ RT+R FT+++R  GI+CF  GILLV +R+  IG+I+Q FGF+NLFG+FFP A+A ++ TPV+ ++L L  +  ++ RL
Sbjct:    1 MLDDNRKIGTLLLGLGFMFLMLGVLMIFDAAMLALGDVLFLSGVALTIGLSRTVRFFTRKERWRGIVCFLGGILLVMLRYPVIGMIIQSFGFLNLFGSFFPVALAFLRQTPVIGNVLNLHVVSEIVDRL 129
[Close]
BLAST of NO07G04060 vs. NCBI_GenBank
Match: XP_012204488.1 (hypothetical protein SPRG_09674 [Saprolegnia parasitica CBS 223.65] >KDO24841.1 hypothetical protein SPRG_09674 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 136.7 bits (343), Expect = 5.300e-29
Identity = 69/129 (53.49%), Postives = 95/129 (73.64%), Query Frame = 0 
Query:    1 MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRL 130
            M+DDN+KIG  LLG+ FLF+ +GV+   D+ L+AIGD LFL+GL   IG+ RTI+ FT++DR  GI+CF  GI LV IR+  IG+ +Q FGF+NLFG+FFP A+A ++ TPVL  +L LP I  ++ +L
Sbjct:    1 MMDDNRKIGTLLLGVGFLFLFLGVMLFFDAALLAIGDVLFLSGLAMTIGLSRTIKFFTRKDRWRGIVCFLGGIFLVMIRYPIIGMCVQSFGFLNLFGSFFPVAVAFLRQTPVLGTVLNLPVIGDIVDKL 129
The following BLAST results are available for this feature:
BLAST of NO07G04060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCA26423.17.400e-3152.63vesicle transporter GOT1Blike protein putative [Al... [more]
CCI48435.11.700e-3051.88unnamed protein product [Albugo candida][more]
XP_008893340.14.800e-3053.49hypothetical protein PPTG_01707 [Phytophthora para... [more]
XP_002903204.14.800e-3051.94vesicle transporter GOT1B-like protein [Phytophtho... [more]
POM74068.11.100e-2953.49Vesicle transporter GOT1B-like protein [Phytophtho... [more]
POM68558.12.400e-2952.71Vesicle transporter GOT1B-like protein [Phytophtho... [more]
XP_008611152.14.100e-2953.49hypothetical protein SDRG_07112 [Saprolegnia dicli... [more]
OWZ07506.14.100e-2952.71Vesicle transporter GOT1B [Phytophthora megakarya][more]
XP_002903253.15.300e-2951.16vesicle transporter, putative [Phytophthora infest... [more]
XP_012204488.15.300e-2953.49hypothetical protein SPRG_09674 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04060.1NO07G04060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581394gene_2752Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04060.1NO07G04060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04060 ID=NO07G04060|Name=NO07G04060|organism=Nannochloropsis oceanica|type=gene|length=1324bp
ATGTTGGACGATAATAAGAAAATTGGCATGGGTCTGTTGGGCCTGAGCTT
TCTCTTCATTTCCATGGGTGTCCTCTTCCTCCTGGACTCGACCTTGATAG
CCATAGgtaagcgcaagagaaaggaggcaagggtgtaaaagaagcggaag
gaaaaagagcgtaatatattgtatcttatcgctgctgtcttccttgcaag
caaggaaaaagggcgtgagggtcgcatgagaaaaggagggagggtgaaag
ggggggaggtgagagagcttggaaagggatgtgcactcatgcaccagcaa
cagcagcatcagcggcaacagcagcaccaacaatagcagcaacagcaaca
aaagcagcagcagcaacaacagcaacttcagcagcaacagcaacagcagc
agcaacagcagcagtagcagtagcaacagcatcaatcctctcctttatac
cactttatctctctggacaagctagctgcggtggccacgctatcaccttc
cctttcaccatttctctctccctctctccctccctccctccctccctcca
ccatcctttcacagGCGACTTTCTCTTCCTGACCGGGCTAGTGTTCATTA
TTGGCATGCAGCGAACAATTCGGCTGTTCACGAAGCGGGATCGAGCTCCG
GGTATCATTTGCTTTTTCTTGGGAATTCTACTGGTGTTTATAAGgtagta
ttggcgggggcgaaggaagggaaggaggatgggagcacttgttgtgggag
gtatgcccgacattggtagctgcattttgccaaaaaggggggggtatggg
gcgcttgttatggacgtaggatggcggaggggaaggaagggagggtcaga
gaccagtaagcatgtttgtcatgcaggatgcctgttggtgttgtgatgag
tacgtttggaggccttgatgataatagcggtataagggggatattgatgc
acaaattgtctgccccctctttttcctgtctcaatttcttttcatttata
gagagaggttgttctttcgtgagatcgatgcgggtcatgggtaagcctcc
attgcccgtccatctacacaaaggcacttatgcccgtctcatctcatatc
atcccaatcccgcccccgccatccttccctccctcccctcccccagATGG
ACATTCATCGGCCTCATCCTCCAGATCTTCGGCTTCGTCAACCTGTTCGG
AAACTTCTTTCCCCCAGCCATCGCCGTCATGCAGCACACACCCGTCCTAA
AAGATATTTTGCGGTTACCTGGGATCCGCTACGTGATTAGCAGACTAGGG
ACGCGGTCGAGAGCACCTGTGTAA
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protein sequence of NO07G04060.1

>NO07G04060.1-protein ID=NO07G04060.1-protein|Name=NO07G04060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGM
QRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFF
PPAIAVMQHTPVLKDILRLPGIRYVISRLGTRSRAPV*
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Synonyms
Publications