NO07G04060.1, NO07G04060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04060.1
Unique NameNO07G04060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length414
Alignment locationchr7:1131590..1132913 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1131590..1132913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04060.1 vs.
Match: CCA26423.1 (vesicle transporter GOT1Blike protein putative [Albugo laibachii Nc14])

HSP 1 Score: 142.9 bits (359), Expect = 7.400e-31
Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 0 
Query:    3 DDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGMQRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFFPPAIAVMQHTPVLKDILRLPGIRYVISRLGTRSRA 136
            DDN+KIG  LLG+ F F+ +GV+   D+ L+A+GD L L+G+   IG QRTIR FT+R+R  GI+CF  GI+LV +RW  +G++LQ FGF+NLFG+FFP A+A M+  P+L  IL LPGIR V+ RL   +++
Sbjct:    4 DDNRKIGTLLLGIGFGFLLLGVILFFDAALLALGDILLLSGVALTIGFQRTIRFFTRRERWRGILCFLGGIILVMLRWPVVGMVLQSFGFLNLFGSFFPVAVAFMRQMPILGTILNLPGIRSVVDRLAGSTKS 136
The following BLAST results are available for this feature:
BLAST of NO07G04060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CCA26423.17.400e-3152.63vesicle transporter GOT1Blike protein putative [Al... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04060NO07G04060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04060.1NO07G04060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04060.1.cds1NO07G04060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04060.1.cds2NO07G04060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04060.1.cds3NO07G04060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04060.1 ID=NO07G04060.1|Name=NO07G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=414bp
ATGTTGGACGATAATAAGAAAATTGGCATGGGTCTGTTGGGCCTGAGCTT
TCTCTTCATTTCCATGGGTGTCCTCTTCCTCCTGGACTCGACCTTGATAG
CCATAGGCGACTTTCTCTTCCTGACCGGGCTAGTGTTCATTATTGGCATG
CAGCGAACAATTCGGCTGTTCACGAAGCGGGATCGAGCTCCGGGTATCAT
TTGCTTTTTCTTGGGAATTCTACTGGTGTTTATAAGATGGACATTCATCG
GCCTCATCCTCCAGATCTTCGGCTTCGTCAACCTGTTCGGAAACTTCTTT
CCCCCAGCCATCGCCGTCATGCAGCACACACCCGTCCTAAAAGATATTTT
GCGGTTACCTGGGATCCGCTACGTGATTAGCAGACTAGGGACGCGGTCGA
GAGCACCTGTGTAA
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protein sequence of NO07G04060.1

>NO07G04060.1-protein ID=NO07G04060.1-protein|Name=NO07G04060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGM
QRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFF
PPAIAVMQHTPVLKDILRLPGIRYVISRLGTRSRAPV*
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mRNA from alignment at chr7:1131590..1132913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04060.1 ID=NO07G04060.1|Name=NO07G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at chr7:1131590..1132913- (Nannochloropsis oceanica)
ATGTTGGACGATAATAAGAAAATTGGCATGGGTCTGTTGGGCCTGAGCTT
TCTCTTCATTTCCATGGGTGTCCTCTTCCTCCTGGACTCGACCTTGATAG
CCATAGGTAAGCGCAAGAGAAAGGAGGCAAGGGTGTAAAAGAAGCGGAAG
GAAAAAGAGCGTAATATATTGTATCTTATCGCTGCTGTCTTCCTTGCAAG
CAAGGAAAAAGGGCGTGAGGGTCGCATGAGAAAAGGAGGGAGGGTGAAAG
GGGGGGAGGTGAGAGAGCTTGGAAAGGGATGTGCACTCATGCACCAGCAA
CAGCAGCATCAGCGGCAACAGCAGCACCAACAATAGCAGCAACAGCAACA
AAAGCAGCAGCAGCAACAACAGCAACTTCAGCAGCAACAGCAACAGCAGC
AGCAACAGCAGCAGTAGCAGTAGCAACAGCATCAATCCTCTCCTTTATAC
CACTTTATCTCTCTGGACAAGCTAGCTGCGGTGGCCACGCTATCACCTTC
CCTTTCACCATTTCTCTCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCA
CCATCCTTTCACAGGCGACTTTCTCTTCCTGACCGGGCTAGTGTTCATTA
TTGGCATGCAGCGAACAATTCGGCTGTTCACGAAGCGGGATCGAGCTCCG
GGTATCATTTGCTTTTTCTTGGGAATTCTACTGGTGTTTATAAGGTAGTA
TTGGCGGGGGCGAAGGAAGGGAAGGAGGATGGGAGCACTTGTTGTGGGAG
GTATGCCCGACATTGGTAGCTGCATTTTGCCAAAAAGGGGGGGGTATGGG
GCGCTTGTTATGGACGTAGGATGGCGGAGGGGAAGGAAGGGAGGGTCAGA
GACCAGTAAGCATGTTTGTCATGCAGGATGCCTGTTGGTGTTGTGATGAG
TACGTTTGGAGGCCTTGATGATAATAGCGGTATAAGGGGGATATTGATGC
ACAAATTGTCTGCCCCCTCTTTTTCCTGTCTCAATTTCTTTTCATTTATA
GAGAGAGGTTGTTCTTTCGTGAGATCGATGCGGGTCATGGGTAAGCCTCC
ATTGCCCGTCCATCTACACAAAGGCACTTATGCCCGTCTCATCTCATATC
ATCCCAATCCCGCCCCCGCCATCCTTCCCTCCCTCCCCTCCCCCAGATGG
ACATTCATCGGCCTCATCCTCCAGATCTTCGGCTTCGTCAACCTGTTCGG
AAACTTCTTTCCCCCAGCCATCGCCGTCATGCAGCACACACCCGTCCTAA
AAGATATTTTGCGGTTACCTGGGATCCGCTACGTGATTAGCAGACTAGGG
ACGCGGTCGAGAGCACCTGTGTAA
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Coding sequence (CDS) from alignment at chr7:1131590..1132913-

>NO07G04060.1 ID=NO07G04060.1|Name=NO07G04060.1|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at chr7:1131590..1132913- (Nannochloropsis oceanica)
ATGTTGGACGATAATAAGAAAATTGGCATGGGTCTGTTGGGCCTGAGCTT
TCTCTTCATTTCCATGGGTGTCCTCTTCCTCCTGGACTCGACCTTGATAG
CCATAGGCGACTTTCTCTTCCTGACCGGGCTAGTGTTCATTATTGGCATG
CAGCGAACAATTCGGCTGTTCACGAAGCGGGATCGAGCTCCGGGTATCAT
TTGCTTTTTCTTGGGAATTCTACTGGTGTTTATAAGATGGACATTCATCG
GCCTCATCCTCCAGATCTTCGGCTTCGTCAACCTGTTCGGAAACTTCTTT
CCCCCAGCCATCGCCGTCATGCAGCACACACCCGTCCTAAAAGATATTTT
GCGGTTACCTGGGATCCGCTACGTGATTAGCAGACTAGGGACGCGGTCGA
GAGCACCTGTGTAA
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Synonyms
Publications