NO07G03940, NO07G03940 (gene) Nannochloropsis oceanica

Overview
NameNO07G03940
Unique NameNO07G03940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length579
Alignment locationchr7:1097803..1098381 +

Link to JBrowse

Properties
Property NameValue
DescriptionSjoegren syndrome nuclear autoantigen 1 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1097803..1098381 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033362SSNA1_fam
Vocabulary: Cellular Component
TermDefinition
GO:0031514motile cilium
Homology
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: XP_002773936.1 (13 KDA deflagellation-inducible protein, putative [Perkinsus marinus ATCC 50983] >EER05752.1 13 KDA deflagellation-inducible protein, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 109.4 bits (272), Expect = 1.100e-20
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLR 129
            QG  LQ YN+ELV+ + +L++KR+ L++QI  EEE + ++Q E A +  RLQRI+ SL  K Q RN YD+TI ETEAAY KILESSQTLLHVLKRES +L +
Sbjct:    4 QGSTLQNYNSELVKCIEDLREKREELNRQILKEEEDKGKIQKELAVLTDRLQRINESLVRKTQARNEYDKTIQETEAAYMKILESSQTLLHVLKRESVNLTK 105
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: XP_006640555.1 (PREDICTED: Sjoegren syndrome nuclear autoantigen 1 [Lepisosteus oculatus])

HSP 1 Score: 107.1 bits (266), Expect = 5.200e-20
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLRSGSSSK 135
            QG ALQ YN ELV+ + EL  KRD L++QI  EEE +++LQ++   +  +L R++ SL  K+ +RN +DRTI ETEAAY KILESSQTLL VLKRE+G+L ++    K
Sbjct:    4 QGAALQTYNNELVKCIEELCAKRDELNRQIEQEEEEKVRLQNDIRILTEKLSRVNESLARKLASRNDFDRTIAETEAAYMKILESSQTLLSVLKREAGNLGKAADPRK 111
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: XP_015272276.1 (PREDICTED: Sjoegren syndrome nuclear autoantigen 1 [Gekko japonicus])

HSP 1 Score: 107.1 bits (266), Expect = 5.200e-20
Identity = 56/103 (54.37%), Postives = 80/103 (77.67%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLRS 130
            QG ALQ YN ELV+ + +L  KRD L++QIR+EEE +++LQ+E   +  +L RI+ +L  K+ +RN +D+TI ETEAAY KILESSQTLL+VLK+E+G+L ++
Sbjct:    4 QGAALQSYNNELVKCIEDLCVKRDELNKQIRLEEEEKVKLQNEIRLLTEKLARINENLARKMASRNEFDKTIAETEAAYMKILESSQTLLNVLKKEAGNLTKA 106
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: XP_015687152.1 (PREDICTED: Sjoegren syndrome nuclear autoantigen 1 [Protobothrops mucrosquamatus])

HSP 1 Score: 106.7 bits (265), Expect = 6.800e-20
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLRSGSS 133
            QG ALQ YN ELV+ + EL  KRD LS+QIR EEE + +LQ +   +  RL RI+ +L  K+ TRN +D+TI ETEAAY K+LESSQTLL+VLK+E+G+L ++  S
Sbjct:    4 QGAALQSYNNELVKCIEELCAKRDELSRQIRQEEEEKGKLQGDLRVLTERLARINETLAHKMATRNEFDKTIAETEAAYMKVLESSQTLLNVLKKEAGNLAKATES 109
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: OLP94736.1 (13 kDa deflagellation-inducible protein [Symbiodinium microadriaticum])

HSP 1 Score: 106.3 bits (264), Expect = 8.900e-20
Identity = 63/115 (54.78%), Postives = 83/115 (72.17%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLRS-GSSSKE--GFG 139
            QG  LQ YN ELV+++ +L++KR+ L++QI  EEE + ++Q E + +  RLQ+I+ SL  K Q RN YD+TI ETEAAY KILESSQTLLHVLKRE+   L+S G   +E  GFG
Sbjct: 1975 QGATLQNYNNELVKSIEDLREKREELNRQILKEEEDKAKIQKELSILTDRLQKINESLVRKTQARNEYDKTIQETEAAYMKILESSQTLLHVLKRETVTRLQSCGEPDEEEVGFG 2089
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: XP_012672046.1 (PREDICTED: Sjoegren syndrome nuclear autoantigen 1 [Clupea harengus])

HSP 1 Score: 105.1 bits (261), Expect = 2.000e-19
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLRS 130
            QG ALQ YN ELV+ + EL  KRD L +QI  EEE + +LQH+   +  +L R++ SL  ++  R  +DRTI ETEAAY KILESSQTLL VLK+E+G+L ++
Sbjct:    4 QGAALQTYNNELVKCIEELSSKRDELQRQITQEEEEKARLQHDVRVLTEKLSRVNESLARRLAARADFDRTIAETEAAYMKILESSQTLLSVLKKETGNLTKA 106
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: XP_013878031.1 (PREDICTED: Sjoegren syndrome nuclear autoantigen 1 [Austrofundulus limnaeus])

HSP 1 Score: 105.1 bits (261), Expect = 2.000e-19
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLRS 130
            QG ALQ YN ELV+ + EL  KR+ LS+QIR EE+ + +LQH+   +  +L R+D SL  ++  R   DRTI ETEAAY KILESSQ+LL VLK+E+G+L ++
Sbjct:    4 QGAALQTYNNELVKCIEELCSKREELSRQIRQEEDEKERLQHDVRVLSEKLSRVDESLARRLAARTALDRTIAETEAAYAKILESSQSLLSVLKQEAGNLSKA 106
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: CBN79967.1 (Deflagellation inducible protein,13 kDa [Ectocarpus siliculosus])

HSP 1 Score: 104.8 bits (260), Expect = 2.600e-19
Identity = 55/107 (51.40%), Postives = 78/107 (72.90%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLRSGSSS 134
            QG  LQ YN ELV+ + +L++KR+ +++QI  EEE + ++Q + + +  RL +I+ SL  K+Q RN YDRT+ ETEAAY KILESSQTLLHVLKRE+ +L +   +S
Sbjct:   10 QGATLQNYNNELVKCIEDLREKREEVNRQILKEEEEKAKIQKDLSILTDRLSKINESLARKVQARNEYDRTVQETEAAYMKILESSQTLLHVLKRETVNLTKKKQAS 116
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: XP_005818687.1 (hypothetical protein GUITHDRAFT_122093 [Guillardia theta CCMP2712] >EKX31707.1 hypothetical protein GUITHDRAFT_122093 [Guillardia theta CCMP2712])

HSP 1 Score: 104.8 bits (260), Expect = 2.600e-19
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLRSGSSS 134
            QG +LQ YN ELV+ + +LK+KR+ +++QI  +EE + ++Q++   +  RL RI+ SL  K+ +RN YD+TI ETEAAY KILESSQTLLHVLKRES  L +   SS
Sbjct:    4 QGASLQNYNNELVKCIEDLKEKREEVNRQILKDEEEKQKIQNDLRILTERLSRINDSLARKVASRNEYDKTIMETEAAYMKILESSQTLLHVLKRESVSLTKKKQSS 110
[Close]
BLAST of NO07G03940 vs. NCBI_GenBank
Match: XP_017315475.1 (PREDICTED: Sjoegren syndrome nuclear autoantigen 1 [Ictalurus punctatus])

HSP 1 Score: 104.8 bits (260), Expect = 2.600e-19
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLRS 130
            QG ALQ YN ELV+ + EL  KRD L++QI+ EEE + +LQH+   +  +L R+  SL  ++ TR+  DRTI ETEAAY KILESSQTLL VLK+E+G+L ++
Sbjct:    4 QGAALQTYNNELVKCIEELFLKRDELNKQIQQEEEEKTRLQHDIRVLTEKLNRVSESLDHRLTTRSELDRTIAETEAAYMKILESSQTLLSVLKKETGNLSKA 106
The following BLAST results are available for this feature:
BLAST of NO07G03940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002773936.11.100e-2058.8213 KDA deflagellation-inducible protein, putative ... [more]
XP_006640555.15.200e-2053.70PREDICTED: Sjoegren syndrome nuclear autoantigen 1... [more]
XP_015272276.15.200e-2054.37PREDICTED: Sjoegren syndrome nuclear autoantigen 1... [more]
XP_015687152.16.800e-2055.66PREDICTED: Sjoegren syndrome nuclear autoantigen 1... [more]
OLP94736.18.900e-2054.7813 kDa deflagellation-inducible protein [Symbiodin... [more]
XP_012672046.12.000e-1953.40PREDICTED: Sjoegren syndrome nuclear autoantigen 1... [more]
XP_013878031.12.000e-1953.40PREDICTED: Sjoegren syndrome nuclear autoantigen 1... [more]
CBN79967.12.600e-1951.40Deflagellation inducible protein,13 kDa [Ectocarpu... [more]
XP_005818687.12.600e-1953.27hypothetical protein GUITHDRAFT_122093 [Guillardia... [more]
XP_017315475.12.600e-1954.37PREDICTED: Sjoegren syndrome nuclear autoantigen 1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000451NSK000451Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03940.1NO07G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581350gene_2738Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03940.1NO07G03940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03940 ID=NO07G03940|Name=NO07G03940|organism=Nannochloropsis oceanica|type=gene|length=579bp
ATGTCGTCCCCCTCGCTTTCGTTCTCCGCTGCCTCCTCTTCTGCCTCCAC
CAGCATCACAACCACCAGCACCCTCCCACAGGGCCAAGCGCTTCAATTGT
ACAACACAGAGCTGGTTCAGGCCCTGAGAGAGCTGAAGGACAAACGGGAC
GCACTCAGCCAGCAAATAAGGATGGAGGAAGAAACTCGAATTCAGTTGCA
GCATGAGGCAGCAGCAATTGGAGCCAGGCTCCAGCGCATCGACGGGTCTT
TGCATGAGAAGATTCAGACCAGAAACGTTTACGATAGAACAAgtaagttt
ctcgattttgtacctggggcatgacttattttcttcgaacagaaaattcg
aaggcaagaatgcccgctcacgttttccctcctctttccaccagTCGGAG
AAACAGAGGCTGCATACAGAAAGATCCTGGAAAGCAGCCAGACATTGCTG
CACGTCTTGAAACGGGAGAGTGGTCATTTGTTGCGTAGTGGGAGCAGCAG
CAAAGAAGGGTTTGGGCAGCAGCAGCCCATGGCAGGGTCAAGAATGGGGG
TTGATGGAAATGGAAGTATGGCTAATTAA
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protein sequence of NO07G03940.1

>NO07G03940.1-protein ID=NO07G03940.1-protein|Name=NO07G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MSSPSLSFSAASSSASTSITTTSTLPQGQALQLYNTELVQALRELKDKRD
ALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGE
TEAAYRKILESSQTLLHVLKRESGHLLRSGSSSKEGFGQQQPMAGSRMGV
DGNGSMAN*
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Synonyms
Publications