NO07G03940.1, NO07G03940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03940.1
Unique NameNO07G03940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr7:1097803..1098381 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1097803..1098381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03940.1 vs.
Match: XP_002773936.1 (13 KDA deflagellation-inducible protein, putative [Perkinsus marinus ATCC 50983]; EER05752.1 13 KDA deflagellation-inducible protein, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 108.6 bits (270), Expect = 1.800e-20
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 0 
Query:   27 QGQALQLYNTELVQALRELKDKRDALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGETEAAYRKILESSQTLLHVLKRESGHLLR 129
            QG  LQ YN+ELV+ + +L++KR+ L++QI  EEE + ++Q E A +  RLQRI+ SL  K Q RN YD+TI ETEAAY KILESSQTLLHVLKRES +L +
Sbjct:    4 QGSTLQNYNSELVKCIEDLREKREELNRQILKEEEDKGKIQKELAVLTDRLQRINESLVRKTQARNEYDKTIQETEAAYMKILESSQTLLHVLKRESVNLTK 105
The following BLAST results are available for this feature:
BLAST of NO07G03940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002773936.11.800e-2058.8213 KDA deflagellation-inducible protein, putative ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03940NO07G03940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03940.1NO07G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03940.1.cds1NO07G03940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03940.1.cds2NO07G03940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03940.1 ID=NO07G03940.1|Name=NO07G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=477bp
ATGTCGTCCCCCTCGCTTTCGTTCTCCGCTGCCTCCTCTTCTGCCTCCAC
CAGCATCACAACCACCAGCACCCTCCCACAGGGCCAAGCGCTTCAATTGT
ACAACACAGAGCTGGTTCAGGCCCTGAGAGAGCTGAAGGACAAACGGGAC
GCACTCAGCCAGCAAATAAGGATGGAGGAAGAAACTCGAATTCAGTTGCA
GCATGAGGCAGCAGCAATTGGAGCCAGGCTCCAGCGCATCGACGGGTCTT
TGCATGAGAAGATTCAGACCAGAAACGTTTACGATAGAACAATCGGAGAA
ACAGAGGCTGCATACAGAAAGATCCTGGAAAGCAGCCAGACATTGCTGCA
CGTCTTGAAACGGGAGAGTGGTCATTTGTTGCGTAGTGGGAGCAGCAGCA
AAGAAGGGTTTGGGCAGCAGCAGCCCATGGCAGGGTCAAGAATGGGGGTT
GATGGAAATGGAAGTATGGCTAATTAA
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protein sequence of NO07G03940.1

>NO07G03940.1-protein ID=NO07G03940.1-protein|Name=NO07G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MSSPSLSFSAASSSASTSITTTSTLPQGQALQLYNTELVQALRELKDKRD
ALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGE
TEAAYRKILESSQTLLHVLKRESGHLLRSGSSSKEGFGQQQPMAGSRMGV
DGNGSMAN*
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mRNA from alignment at chr7:1097803..1098381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03940.1 ID=NO07G03940.1|Name=NO07G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=579bp|location=Sequence derived from alignment at chr7:1097803..1098381+ (Nannochloropsis oceanica)
ATGTCGTCCCCCTCGCTTTCGTTCTCCGCTGCCTCCTCTTCTGCCTCCAC
CAGCATCACAACCACCAGCACCCTCCCACAGGGCCAAGCGCTTCAATTGT
ACAACACAGAGCTGGTTCAGGCCCTGAGAGAGCTGAAGGACAAACGGGAC
GCACTCAGCCAGCAAATAAGGATGGAGGAAGAAACTCGAATTCAGTTGCA
GCATGAGGCAGCAGCAATTGGAGCCAGGCTCCAGCGCATCGACGGGTCTT
TGCATGAGAAGATTCAGACCAGAAACGTTTACGATAGAACAAGTAAGTTT
CTCGATTTTGTACCTGGGGCATGACTTATTTTCTTCGAACAGAAAATTCG
AAGGCAAGAATGCCCGCTCACGTTTTCCCTCCTCTTTCCACCAGTCGGAG
AAACAGAGGCTGCATACAGAAAGATCCTGGAAAGCAGCCAGACATTGCTG
CACGTCTTGAAACGGGAGAGTGGTCATTTGTTGCGTAGTGGGAGCAGCAG
CAAAGAAGGGTTTGGGCAGCAGCAGCCCATGGCAGGGTCAAGAATGGGGG
TTGATGGAAATGGAAGTATGGCTAATTAA
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Coding sequence (CDS) from alignment at chr7:1097803..1098381+

>NO07G03940.1 ID=NO07G03940.1|Name=NO07G03940.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr7:1097803..1098381+ (Nannochloropsis oceanica)
ATGTCGTCCCCCTCGCTTTCGTTCTCCGCTGCCTCCTCTTCTGCCTCCAC
CAGCATCACAACCACCAGCACCCTCCCACAGGGCCAAGCGCTTCAATTGT
ACAACACAGAGCTGGTTCAGGCCCTGAGAGAGCTGAAGGACAAACGGGAC
GCACTCAGCCAGCAAATAAGGATGGAGGAAGAAACTCGAATTCAGTTGCA
GCATGAGGCAGCAGCAATTGGAGCCAGGCTCCAGCGCATCGACGGGTCTT
TGCATGAGAAGATTCAGACCAGAAACGTTTACGATAGAACAATCGGAGAA
ACAGAGGCTGCATACAGAAAGATCCTGGAAAGCAGCCAGACATTGCTGCA
CGTCTTGAAACGGGAGAGTGGTCATTTGTTGCGTAGTGGGAGCAGCAGCA
AAGAAGGGTTTGGGCAGCAGCAGCCCATGGCAGGGTCAAGAATGGGGGTT
GATGGAAATGGAAGTATGGCTAATTAA
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Synonyms
Publications