NO07G03900, NO07G03900 (gene) Nannochloropsis oceanica

Overview
NameNO07G03900
Unique NameNO07G03900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1302
Alignment locationchr7:1088884..1090185 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1088884..1090185 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G03900 vs. NCBI_GenBank
Match: EWM26972.1 (hypothetical protein Naga_100127g24 [Nannochloropsis gaditana])

HSP 1 Score: 133.3 bits (334), Expect = 1.900e-27
Identity = 80/168 (47.62%), Postives = 102/168 (60.71%), Query Frame = 0 
Query:  127 KVRRRNGEILRVTARDLSPLDQ------SEQGRNEEDNQEFVEHLDLFFDN-SRAATAHQGLPFPPQIGPDLATLIYPLTTEYFLKEVWNKKALVIQGGATRLKRFCRDLGNSHASANSTAXXXXXXXXXXXXXXXXSLPSFTPLTMDIPSLLEQAHRIVVWMKTKTK 288
            KVRR NGE++RVT+ DLSPL +      S    N E+    V H+DL FD+ +  A  ++  P PPQI   LA+LIYPLT EYFLKE+WN+KALVIQ GA RLK+ CR+L +      S+                 SLP F+ L + +  LLE AHRIVVWMKT+T+
Sbjct:  136 KVRRLNGEVVRVTSTDLSPLARAPDAHFSRPTENSEEENRLVCHIDLLFDDVTPGAHGNKLSPTPPQIDTSLASLIYPLTPEYFLKEIWNQKALVIQAGAGRLKKMCRNL-DPIGVLPSSNRRKRPRPLSAPASRPPSLP-FSTLHLRVSRLLESAHRIVVWMKTRTR 301
The following BLAST results are available for this feature:
BLAST of NO07G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26972.11.900e-2747.62hypothetical protein Naga_100127g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000457NSK000457Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03900.1NO07G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|662074gene_2734Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100127g24gene3574Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03900.1NO07G03900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03900 ID=NO07G03900|Name=NO07G03900|organism=Nannochloropsis oceanica|type=gene|length=1302bp
ATGGACCCCGCGGACCGCAAGAAGCGCAAGCTCTCACCATCTTCAGCATC
ATCCTCATCCTCCACGTCACCTAAGCTCACACCATTTGCCTTTGGGTTCT
ATAACGACACAGCCGCCGTTAGTATGGATCACGGCCTTGACGGTGAGGCT
TTGATGACGGCAGCCACGACATCAAACCCTGCCAATGCTGCCCCCTCCCC
TACCCCCCAACAACCTCCCCATCCCCATCCCTCCCGGCAAACCCATCCAA
GACAACGACGGATCACAACCCGCTATGCCTGGTTGCATCTACACCAACCC
AACGACAGTATGACTCCTACACCATCGCGGGAGCGGGTACGGGTGCTGTG
GGAGATGAGCAGCAGCGCGAGCAGCCTTAAGGTTCGAAGGAGGAATGGGG
AGATTTTGAGGGTTACGGCCCGGGATCTATCTCCGCTCGATCAGAGCGAG
CAGGGAAGGAATGAGGAGGACAACCAAGAGTTTGTAGAGCACCTAGACTT
GTTTTTTGACAACAGCCGCGCAGCCACCGCTCACCAGGGGTTACCATTCC
CCCCTCAGATCGGCCCTGACCTCGCCACCTTAATTTATCCCTTGACGACC
GAATACTTCTTGAAGGAAGTATGGAACAAAAAGGCTTTGGTCATTCAAGG
AGGTGCGACACGACTCAAGAGATTTTGCCGAGACTTAGGGAATAGTCATG
CTTCTGCGAATTCTACTGCTGCTGCTCCTGCTGCTGTGAAGAGGAGCTCT
TCGTTATCCTCGTCTTTGTCCTTGCCCTCCTTCACGCCCTTGACCATGGA
CATACCATCTTTGCTCGAGCAGGCCCATCGTATTGTTGTATGGATGAAAA
CCAAGACAAAGACACAGAGGCCTGAGCTGTCGGACAACGGGAAGAAGAGC
AGCGGCGACTCTAGCAGCACCGGCAAGAGCAGTACCAGCACCAGCAGTAA
AAGAAGAAAAAAGACAGATGTCGCCCTTCCAGAAATGCAATACCTGGACA
ATGCCCCGGCCTCTGTCGCCCTTGCCTGTCATCGAGCGGGGCATTCCCTG
TACTTCAACCCCCCCCTTCCCTCCAGCACCCTTACATCCACTCTCTCTGC
CTTGCCCTCGGCCTCCTTCCCCTCCTTCCCTCTCCCGGGGGTCCTGCAGG
GCCTGCAGGGAGGGAAGGCGATATGGAGATCTTCGCCGTGCGCCCCCCTC
ACCACACCCCCGCCCATTGGGATTCTCAACACAATTTTACCATTCAGATC
CGCGGCCGGAAGCAGTGGGTCGTTTCCAAATCCGGCTTGTCAGAACCCCT
AA
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protein sequence of NO07G03900.1

>NO07G03900.1-protein ID=NO07G03900.1-protein|Name=NO07G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MDPADRKKRKLSPSSASSSSSTSPKLTPFAFGFYNDTAAVSMDHGLDGEA
LMTAATTSNPANAAPSPTPQQPPHPHPSRQTHPRQRRITTRYAWLHLHQP
NDSMTPTPSRERVRVLWEMSSSASSLKVRRRNGEILRVTARDLSPLDQSE
QGRNEEDNQEFVEHLDLFFDNSRAATAHQGLPFPPQIGPDLATLIYPLTT
EYFLKEVWNKKALVIQGGATRLKRFCRDLGNSHASANSTAAAPAAVKRSS
SLSSSLSLPSFTPLTMDIPSLLEQAHRIVVWMKTKTKTQRPELSDNGKKS
SGDSSSTGKSSTSTSSKRRKKTDVALPEMQYLDNAPASVALACHRAGHSL
YFNPPLPSSTLTSTLSALPSASFPSFPLPGVLQGLQGGKAIWRSSPCAPL
TTPPPIGILNTILPFRSAAGSSGSFPNPACQNP*
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Synonyms
Publications