NO07G03900.1, NO07G03900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03900.1
Unique NameNO07G03900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1302
Alignment locationchr7:1088884..1090185 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1088884..1090185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03900.1 vs.
Match: EWM26972.1 (hypothetical protein Naga_100127g24 [Nannochloropsis gaditana])

HSP 1 Score: 157.1 bits (396), Expect = 1.200e-34
Identity = 122/313 (38.98%), Postives = 169/313 (53.99%), Query Frame = 0 
Query:   13 PSSASSSSSTSPKLTPFAFGFYNDTAAVSMDHGLDGEALMTAATTSNPANAAPSPTPQQPPHPHPSRQTHPRQR-RITTRYAWLHLHQPNDSMTPTP-----SRERVRVLWEMSSSASSLKVRRRNGEILRVTARDLSPLDQ------SEQGRNEEDNQEFVEHLDLFFDN-SRAATAHQGLPFPPQIGPDLATLIYPLTTEYFLKEVWNKKALVIQGGATRLKRFCRDLGNSHASANSTAAAPAAVKRSSSLSSSLSLP---SFTPLTMDIPSLLEQAHRIVVWMKTKTKTQRPELSDNGKKSSGDSSSTGK 310
            P +A + ++ +    PF F FY ++     D      AL   + ++    A PS           SR    R+  RI+TR+A L      D  T T      S ERVRVLWE SS++S++KVRR NGE++RVT+ DLSPL +      S    N E+    V H+DL FD+ +  A  ++  P PPQI   LA+LIYPLT EYFLKE+WN+KALVIQ GA RLK+ CR+L       +S        KR   LS+  S P    F+ L + +  LLE AHRIVVWMKT+T+ +    +   +++  ++S  G+
Sbjct:   26 PLTAPTKAANTSAPAPFMFSFYRESETGHQD---SKAALFHTSGSATTNTAGPSSI-------FASRLVQERKASRISTRHALLRRTAKQDPHTATDPLALQSEERVRVLWEASSNSSNIKVRRLNGEVVRVTSTDLSPLARAPDAHFSRPTENSEEENRLVCHIDLLFDDVTPGAHGNKLSPTPPQIDTSLASLIYPLTPEYFLKEIWNQKALVIQAGAGRLKKMCRNLDPIGVLPSSNRR-----KRPRPLSAPASRPPSLPFSTLHLRVSRLLESAHRIVVWMKTRTRHKGGRGNRTSRRAEQETSPHGR 323
The following BLAST results are available for this feature:
BLAST of NO07G03900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26972.11.200e-3438.98hypothetical protein Naga_100127g24 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03900NO07G03900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03900.1NO07G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03900.1.cds1NO07G03900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03900.1 ID=NO07G03900.1|Name=NO07G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
ATGGACCCCGCGGACCGCAAGAAGCGCAAGCTCTCACCATCTTCAGCATC
ATCCTCATCCTCCACGTCACCTAAGCTCACACCATTTGCCTTTGGGTTCT
ATAACGACACAGCCGCCGTTAGTATGGATCACGGCCTTGACGGTGAGGCT
TTGATGACGGCAGCCACGACATCAAACCCTGCCAATGCTGCCCCCTCCCC
TACCCCCCAACAACCTCCCCATCCCCATCCCTCCCGGCAAACCCATCCAA
GACAACGACGGATCACAACCCGCTATGCCTGGTTGCATCTACACCAACCC
AACGACAGTATGACTCCTACACCATCGCGGGAGCGGGTACGGGTGCTGTG
GGAGATGAGCAGCAGCGCGAGCAGCCTTAAGGTTCGAAGGAGGAATGGGG
AGATTTTGAGGGTTACGGCCCGGGATCTATCTCCGCTCGATCAGAGCGAG
CAGGGAAGGAATGAGGAGGACAACCAAGAGTTTGTAGAGCACCTAGACTT
GTTTTTTGACAACAGCCGCGCAGCCACCGCTCACCAGGGGTTACCATTCC
CCCCTCAGATCGGCCCTGACCTCGCCACCTTAATTTATCCCTTGACGACC
GAATACTTCTTGAAGGAAGTATGGAACAAAAAGGCTTTGGTCATTCAAGG
AGGTGCGACACGACTCAAGAGATTTTGCCGAGACTTAGGGAATAGTCATG
CTTCTGCGAATTCTACTGCTGCTGCTCCTGCTGCTGTGAAGAGGAGCTCT
TCGTTATCCTCGTCTTTGTCCTTGCCCTCCTTCACGCCCTTGACCATGGA
CATACCATCTTTGCTCGAGCAGGCCCATCGTATTGTTGTATGGATGAAAA
CCAAGACAAAGACACAGAGGCCTGAGCTGTCGGACAACGGGAAGAAGAGC
AGCGGCGACTCTAGCAGCACCGGCAAGAGCAGTACCAGCACCAGCAGTAA
AAGAAGAAAAAAGACAGATGTCGCCCTTCCAGAAATGCAATACCTGGACA
ATGCCCCGGCCTCTGTCGCCCTTGCCTGTCATCGAGCGGGGCATTCCCTG
TACTTCAACCCCCCCCTTCCCTCCAGCACCCTTACATCCACTCTCTCTGC
CTTGCCCTCGGCCTCCTTCCCCTCCTTCCCTCTCCCGGGGGTCCTGCAGG
GCCTGCAGGGAGGGAAGGCGATATGGAGATCTTCGCCGTGCGCCCCCCTC
ACCACACCCCCGCCCATTGGGATTCTCAACACAATTTTACCATTCAGATC
CGCGGCCGGAAGCAGTGGGTCGTTTCCAAATCCGGCTTGTCAGAACCCCT
AA
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protein sequence of NO07G03900.1

>NO07G03900.1-protein ID=NO07G03900.1-protein|Name=NO07G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MDPADRKKRKLSPSSASSSSSTSPKLTPFAFGFYNDTAAVSMDHGLDGEA
LMTAATTSNPANAAPSPTPQQPPHPHPSRQTHPRQRRITTRYAWLHLHQP
NDSMTPTPSRERVRVLWEMSSSASSLKVRRRNGEILRVTARDLSPLDQSE
QGRNEEDNQEFVEHLDLFFDNSRAATAHQGLPFPPQIGPDLATLIYPLTT
EYFLKEVWNKKALVIQGGATRLKRFCRDLGNSHASANSTAAAPAAVKRSS
SLSSSLSLPSFTPLTMDIPSLLEQAHRIVVWMKTKTKTQRPELSDNGKKS
SGDSSSTGKSSTSTSSKRRKKTDVALPEMQYLDNAPASVALACHRAGHSL
YFNPPLPSSTLTSTLSALPSASFPSFPLPGVLQGLQGGKAIWRSSPCAPL
TTPPPIGILNTILPFRSAAGSSGSFPNPACQNP*
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mRNA from alignment at chr7:1088884..1090185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03900.1 ID=NO07G03900.1|Name=NO07G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp|location=Sequence derived from alignment at chr7:1088884..1090185+ (Nannochloropsis oceanica)
ATGGACCCCGCGGACCGCAAGAAGCGCAAGCTCTCACCATCTTCAGCATC
ATCCTCATCCTCCACGTCACCTAAGCTCACACCATTTGCCTTTGGGTTCT
ATAACGACACAGCCGCCGTTAGTATGGATCACGGCCTTGACGGTGAGGCT
TTGATGACGGCAGCCACGACATCAAACCCTGCCAATGCTGCCCCCTCCCC
TACCCCCCAACAACCTCCCCATCCCCATCCCTCCCGGCAAACCCATCCAA
GACAACGACGGATCACAACCCGCTATGCCTGGTTGCATCTACACCAACCC
AACGACAGTATGACTCCTACACCATCGCGGGAGCGGGTACGGGTGCTGTG
GGAGATGAGCAGCAGCGCGAGCAGCCTTAAGGTTCGAAGGAGGAATGGGG
AGATTTTGAGGGTTACGGCCCGGGATCTATCTCCGCTCGATCAGAGCGAG
CAGGGAAGGAATGAGGAGGACAACCAAGAGTTTGTAGAGCACCTAGACTT
GTTTTTTGACAACAGCCGCGCAGCCACCGCTCACCAGGGGTTACCATTCC
CCCCTCAGATCGGCCCTGACCTCGCCACCTTAATTTATCCCTTGACGACC
GAATACTTCTTGAAGGAAGTATGGAACAAAAAGGCTTTGGTCATTCAAGG
AGGTGCGACACGACTCAAGAGATTTTGCCGAGACTTAGGGAATAGTCATG
CTTCTGCGAATTCTACTGCTGCTGCTCCTGCTGCTGTGAAGAGGAGCTCT
TCGTTATCCTCGTCTTTGTCCTTGCCCTCCTTCACGCCCTTGACCATGGA
CATACCATCTTTGCTCGAGCAGGCCCATCGTATTGTTGTATGGATGAAAA
CCAAGACAAAGACACAGAGGCCTGAGCTGTCGGACAACGGGAAGAAGAGC
AGCGGCGACTCTAGCAGCACCGGCAAGAGCAGTACCAGCACCAGCAGTAA
AAGAAGAAAAAAGACAGATGTCGCCCTTCCAGAAATGCAATACCTGGACA
ATGCCCCGGCCTCTGTCGCCCTTGCCTGTCATCGAGCGGGGCATTCCCTG
TACTTCAACCCCCCCCTTCCCTCCAGCACCCTTACATCCACTCTCTCTGC
CTTGCCCTCGGCCTCCTTCCCCTCCTTCCCTCTCCCGGGGGTCCTGCAGG
GCCTGCAGGGAGGGAAGGCGATATGGAGATCTTCGCCGTGCGCCCCCCTC
ACCACACCCCCGCCCATTGGGATTCTCAACACAATTTTACCATTCAGATC
CGCGGCCGGAAGCAGTGGGTCGTTTCCAAATCCGGCTTGTCAGAACCCCT
AA
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Coding sequence (CDS) from alignment at chr7:1088884..1090185+

>NO07G03900.1 ID=NO07G03900.1|Name=NO07G03900.1|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr7:1088884..1090185+ (Nannochloropsis oceanica)
ATGGACCCCGCGGACCGCAAGAAGCGCAAGCTCTCACCATCTTCAGCATC
ATCCTCATCCTCCACGTCACCTAAGCTCACACCATTTGCCTTTGGGTTCT
ATAACGACACAGCCGCCGTTAGTATGGATCACGGCCTTGACGGTGAGGCT
TTGATGACGGCAGCCACGACATCAAACCCTGCCAATGCTGCCCCCTCCCC
TACCCCCCAACAACCTCCCCATCCCCATCCCTCCCGGCAAACCCATCCAA
GACAACGACGGATCACAACCCGCTATGCCTGGTTGCATCTACACCAACCC
AACGACAGTATGACTCCTACACCATCGCGGGAGCGGGTACGGGTGCTGTG
GGAGATGAGCAGCAGCGCGAGCAGCCTTAAGGTTCGAAGGAGGAATGGGG
AGATTTTGAGGGTTACGGCCCGGGATCTATCTCCGCTCGATCAGAGCGAG
CAGGGAAGGAATGAGGAGGACAACCAAGAGTTTGTAGAGCACCTAGACTT
GTTTTTTGACAACAGCCGCGCAGCCACCGCTCACCAGGGGTTACCATTCC
CCCCTCAGATCGGCCCTGACCTCGCCACCTTAATTTATCCCTTGACGACC
GAATACTTCTTGAAGGAAGTATGGAACAAAAAGGCTTTGGTCATTCAAGG
AGGTGCGACACGACTCAAGAGATTTTGCCGAGACTTAGGGAATAGTCATG
CTTCTGCGAATTCTACTGCTGCTGCTCCTGCTGCTGTGAAGAGGAGCTCT
TCGTTATCCTCGTCTTTGTCCTTGCCCTCCTTCACGCCCTTGACCATGGA
CATACCATCTTTGCTCGAGCAGGCCCATCGTATTGTTGTATGGATGAAAA
CCAAGACAAAGACACAGAGGCCTGAGCTGTCGGACAACGGGAAGAAGAGC
AGCGGCGACTCTAGCAGCACCGGCAAGAGCAGTACCAGCACCAGCAGTAA
AAGAAGAAAAAAGACAGATGTCGCCCTTCCAGAAATGCAATACCTGGACA
ATGCCCCGGCCTCTGTCGCCCTTGCCTGTCATCGAGCGGGGCATTCCCTG
TACTTCAACCCCCCCCTTCCCTCCAGCACCCTTACATCCACTCTCTCTGC
CTTGCCCTCGGCCTCCTTCCCCTCCTTCCCTCTCCCGGGGGTCCTGCAGG
GCCTGCAGGGAGGGAAGGCGATATGGAGATCTTCGCCGTGCGCCCCCCTC
ACCACACCCCCGCCCATTGGGATTCTCAACACAATTTTACCATTCAGATC
CGCGGCCGGAAGCAGTGGGTCGTTTCCAAATCCGGCTTGTCAGAACCCCT
AA
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Synonyms
Publications