NO07G03890, NO07G03890 (gene) Nannochloropsis oceanica

Overview
NameNO07G03890
Unique NameNO07G03890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3139
Alignment locationchr7:1084874..1088012 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1084874..1088012 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G03890 vs. NCBI_GenBank
Match: EWM26982.1 (hypothetical protein Naga_100127g23 [Nannochloropsis gaditana])

HSP 1 Score: 215.7 bits (548), Expect = 5.100e-52
Identity = 252/729 (34.57%), Postives = 310/729 (42.52%), Query Frame = 0 
Query:  202 GFEGGEEQHQQQSPSASPVGATALAW-VMGLGLRPSRCLTFITYLTQGHLVIDRARSLLQAWHLFDGHNSDRDFTQGHLHLYSFILGFIPYDLPSSLPHVVLRSPPSVGGGRXXXXXXXXXXXXXXXXXXXVDAETARAE-------PPVLLRTTGERLTGEEGQERKVKRP----------RRGEGIEKGGGRMGER-DQLQISF--------------------------------------------------------------------------------------PASSLPPPSFVP----------PLSLPISSSSSWI----APSPMAVLRASMRGA-----------TPDPELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDDPLTGH------KVDEYAGRGGRERGERREGGWHDLPFDLPPPEANAVMARCGVFWSLPAPEEIRREERREGGRSTRGLEVICDDSFARMFMTEEAIRREMMEKGQGIEAIWECIIAPESLPLFYEALIESGFCVPLNAIGCSRKVLKMLGRLERDHDTAVIDTASGSNDGGERRREGKAEGKRLETAPFQTAAAADDDNDLGPLVLLPNEYEAFITTYVSEDGHHWALTLDVLPLLSAEEE----------------------------AETXXXXXXXXXXXXSMCSFMSSLPTSPLADPED 767
            G +G +EQ + +   A  +  +A      G G++ S C+T I +  +GH+V+ RARSLL AWHL +  +  +DFT GHLH+ SFI+G  P +LP        RSP S+  G                    +D E  R E       PP  L T  E+  G    + +  R            R  G   GGGR   R   LQ  F                                                                                         S  P S  P          PL+ P+++S S       P+PM  LRAS  GA            P P +                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               + + YAG      G   +G W      LP PEANAVMARCG+FWSLP  E        EGGR    LEV+CD SFA +F+TEE +R +M EKG G++ +WE IIAPESLP +YE LIESGFCVP   +GCSRKVLKMLG+ + D  +   + A+G+ DG +  R      KRL                    VLLP E+EAFITTYVSE+G HWA TLDV+PLLS E+E                              +             M S +SSLPTSP+  PED
Sbjct:   45 GIDGLDEQIKSKEVHAVSMRHSASVHPTCGGGVQGSYCMTLIEHFVRGHVVLARARSLLHAWHLLNSQHPGQDFTNGHLHVLSFIIGINPSELP--------RSPLSIWPG-----PLSPLRLRLPGKPEGLDTEAGRLEVDDEPAFPPSTL-TDREKSEGSFQDDGEGHRAWDGGDFWWDGGRDGGASAGGGRTDVRIGDLQEVFGRAIYKNQEDVVPNHDAGQSGWGGLGDMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEERNPDHSALTPHALKEPCPKQDGRSCNPSSLSPNLRRKRCRLSPLATPLATSPSHHLTPGIPAPMLDLRASTGGAMAYLEPSPPSLLPQPHMQSKSPPPCRAVPPPSRHAQGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETEIYAG------GREGKGRWAQ-NNRLPSPEANAVMARCGIFWSLPTEE--------EGGREGACLEVVCDKSFAAIFLTEEELRIDMAEKGWGVDVLWESIIAPESLPTYYEGLIESGFCVPPGQVGCSRKVLKMLGKADFDVRSLEDNRATGNADGAQPAR------KRLRR------------------VLLPEEHEAFITTYVSENGRHWAFTLDVIPLLSGEDEDXXXETKPDEQDAVLGVRDLHMPPVTRFLNSRGCLGDFEGVDMDMSSNISSLPTSPMVGPED 720
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BLAST of NO07G03890 vs. NCBI_GenBank
Match: XP_005852770.1 (hypothetical protein NGA_0689400, partial [Nannochloropsis gaditana CCMP526] >EKU23061.1 hypothetical protein NGA_0689400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 148.7 bits (374), Expect = 7.600e-32
Identity = 78/139 (56.12%), Postives = 90/139 (64.75%), Query Frame = 0 
Query:  510 RGGRE----------RGERREGGWHDLPFDLPPPEANAVMARCGVFWSLPAPEEIRREERREGGRSTRGLEVICDDSFARMFMTEEAIRREMMEKGQGIEAIWECIIAPESLPLFYEALIESGFCVPLNAIGCSRKVLK 639
            RGGRE           G   +G W      LP PEANAVMARCG+FWSLP  E        EGGR    LEV+CD SFA +F+TEE +R +M EKG G++ +WE IIAPESLP +YE LIESGFCVP   +GCSRKVLK
Sbjct:    1 RGGREPQEVETEIYAGGREGKGRWAQ-NNRLPSPEANAVMARCGIFWSLPTEE--------EGGREGACLEVVCDKSFAAIFLTEEELRIDMAEKGWGVDVLWESIIAPESLPTYYEGLIESGFCVPPGQVGCSRKVLK 130
The following BLAST results are available for this feature:
BLAST of NO07G03890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26982.15.100e-5234.57hypothetical protein Naga_100127g23 [Nannochlorops... [more]
XP_005852770.17.600e-3256.12hypothetical protein NGA_0689400, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000458NSK000458Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03890.1NO07G03890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337548gene_2732Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100127g23gene3573Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03890.1NO07G03890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03890 ID=NO07G03890|Name=NO07G03890|organism=Nannochloropsis oceanica|type=gene|length=3139bp
ATGGCTGCGACCTCCATACTTGTGTCTAAAGAGGTTGAGGCCCCTCTCCC
CCCCCCATCATGGTCGTCTGAGGGCGAGCCCGCTTCGGCAGCAATAGCAG
CAGTAAACGCCGACAGGAGCGGGGGCGGCGCTGGCACTCGGGAGGGAACT
AGGAACATTAGAAGCACCTCCAGCAGCAGCCAAGGCTACTATATACCTCA
TCAGTCACCTTTAGGACCACGGATAGGGCGGTCTTCGCATCAGGATTCAC
CACCAGCACCCCCCATTTCTTCCCGGCCGAAGTACCAGCACCAGCATCAG
CACATGCAATTACCGCAAAGTCACCAGCACCAGCATTACCAGCGCTACCA
CTACTACTACCAGTACCAGCATGAGCCTCAAAGCATGTCAGGGGGAGGGC
CACCATGGCCAACGCTTATGTCGTCGGTGCCCTTACCGCCTTCTGTCCAG
CCCCCCAACCATCCACCAGACATGCAGATCCCTCCTACCTCCCCGATGAT
CCTGCAGGATAGACAAGAGAGAGGAGAGGGGAGGAAGAGAGGAAAGTTCC
AACATCAACACCAGCAGCAGCTAGAGCAGCTGCGAATAGGGGAGATGAAT
GTGGGGTTTGAAGGAGGAGAGGAGCAGCATCAGCAGCAGTCACCGTCTGC
TTCGCCTGTGGGGGCGACTGCATTGGCATGGGTTATGGGGCTTGGACTGA
GGCCGTCCCGTTGCTTAACATTCATCACGTATCTGACGCAAGGCCATCTT
GTCATTGATAGGGCGCGAAGCCTCTTgtaagtattttgggggggaattat
cgtttgttgattgctttccttgtatttgcccacatattcagatcaggcga
acgcagttttaggagttttaagcaacctaccgacagaagtgcctctttcc
tgaacaagcgtttatgtgggcctttatcaaatcagttttccgtagccaca
tgcgtgcttgtcattcacctatttacccttgcgctgcactgtgtatgtca
cccttttctccaccactcctgtcattgccgacgcgccttcacacatccac
aacatctcacttttccttctgttcgcgcttttattaagaccccctccccc
ttgactctcttccacctcccttctccccaattgcctgatccaacagGCAA
GCCTGGCATCTCTTCGACGGCCACAACTCCGATCGTGACTTCACGCAAGG
CCATCTGCACCTCTACTCTTTTATCCTGGGTTTCATCCCCTATGACCTCC
CTTCTTCCCTCCCTCATGTGGTTTTAAGATCTCCGCCTTCAGTAGGAGGA
GGACGAGGTGAGGGAGGGGGAGGACGAGGTGGAGGAAGTGCTTCGCCTGT
TACCGGCGGTCCAGTGGATGCAGAAACAGCAAGAGCAGAGCCTCCTGTCC
TCTTGCGCACCACAGGGGAAAGGCTTACAGGTGAAGAAGGACAAGAAAGA
AAAGTAAAGCGGCCACGAAGGGGAGAAGGGATAGAAAAGGGAGGAGGAAG
GATGGGGGAGAGAGATCAACTCCAAATCAGCTTTCCTGCCTCCTCTCTCC
CTCCTCCTTCTTTCGTCCCTCCTCTTTCTCTGCCCATCTCTTCTTCCTCT
TCTTGGATCGCCCCCTCTCCTATGGCTGTGCTTCGTGCCTCCATGAGAGG
CGCCACTCCCGACCCGGAACTTTCGCAGCAGCACCAGCAGAAGCAGGAGG
AGATGCAACAGCAGCACCACCTTAATCACCACCACCACCACCACCAGCAG
CAGAAGCAGGAGGAGATGCAACAGCAGCACCACCTTAATCACCACCACCA
CCACCACCAGCAGCAGCAGCAGCAGCACGAACAGCAGCAGTCAGTCATCC
TCCTTGATGACCCTCTTACAGGTCACAAAGTGGATGAATACGCGGGTCGT
GGCGGCAGAGAAAGAGGCGAAAGGAGGGAGGGAGGATGGCATGACTTGCC
TTTTGACCTGCCCCCTCCCGAGGCCAACGCTGTGATGGCCCGATGTGGAG
TGTTCTGGAGCCTACCTGCTCCGGAGGAGATAAGGAGGGAGGAAAGGAGG
GAAGGAGGTCGCTCTACCCGTGGGCTGGAGGTCATCTGTGACGATTCTTT
TGCAAGGATGTTCATGACAGAGGAGGCCATCCGGAGGGAGATGATGGAAA
AGGGTCAGGGGATTGAAGCGATATGGGAATGgtgaggagggaggggggag
aaaggaaaggagggagggggggggaaagggggtttcggttacagtggttg
ctttggtcgttcagatgggggaaaagagtgtcccttatcgatcatcggcg
gacccacgtgctttacgtcctctacacgtatggcacagtctgatcccgtc
cctccctccctcccgcactccccaacagCATCATCGCACCGGAGTCCCTG
CCTTTGTTCTATGAAGCTCTGATCGAGTCGGGGTTTTGCGTTCCCCTCAA
CGCTATTGGCTGCTCCCGGAAAGTGCTCAAGgtgaggaaagaagaagagg
aggaagaatgaggaagggagagaaggagggaggggggaggggggatctcc
ctttgtagaggtatgcacgagagaggaagaagagcgagaaacaccgagaa
gagctctcgcatgcacaaaagcttcgattatacgcctttgagaagcacat
gtgttagacatgcaccccatttcctctcctcacgccctccctccctccta
tcccccctctgctttgcagATGCTCGGCCGACTCGAGAGGGACCATGACA
CTGCTGTCATTGACACCGCTAGTGGTAGCAATGATGGGGGGGAAAGAAGA
CGAGAAGGAAAAGCAGAAGGAAAACGACTCGAAACAGCACCTTTTCAAAC
AGCAGCAGCAGCAGATGATGACAATGATCTCGGTCCTCTTGTCCTCTTGC
CTAACGAATACGAGGCGTTTATCACCACCTACGTATCCGAAGACGGACAT
CACTGGGCCTTAACCCTGGACGTACTGCCCTTGCTCTCGGCCGAGGAGGA
AGCGGAGACAGCTGAGGGGGATGAGGAGGGGGAGGAAGAGGAAGGGAGCA
TGTGCTCCTTCATGTCTTCTCTGCCGACGTCACCTTTGGCGGACCCGGAG
GATTCGAGTTGGCTCACTGAATCATCCGGGACGATGTAG
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protein sequence of NO07G03890.1

>NO07G03890.1-protein ID=NO07G03890.1-protein|Name=NO07G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=778bp
MAATSILVSKEVEAPLPPPSWSSEGEPASAAIAAVNADRSGGGAGTREGT
RNIRSTSSSSQGYYIPHQSPLGPRIGRSSHQDSPPAPPISSRPKYQHQHQ
HMQLPQSHQHQHYQRYHYYYQYQHEPQSMSGGGPPWPTLMSSVPLPPSVQ
PPNHPPDMQIPPTSPMILQDRQERGEGRKRGKFQHQHQQQLEQLRIGEMN
VGFEGGEEQHQQQSPSASPVGATALAWVMGLGLRPSRCLTFITYLTQGHL
VIDRARSLLQAWHLFDGHNSDRDFTQGHLHLYSFILGFIPYDLPSSLPHV
VLRSPPSVGGGRGEGGGGRGGGSASPVTGGPVDAETARAEPPVLLRTTGE
RLTGEEGQERKVKRPRRGEGIEKGGGRMGERDQLQISFPASSLPPPSFVP
PLSLPISSSSSWIAPSPMAVLRASMRGATPDPELSQQHQQKQEEMQQQHH
LNHHHHHHQQQKQEEMQQQHHLNHHHHHHQQQQQQHEQQQSVILLDDPLT
GHKVDEYAGRGGRERGERREGGWHDLPFDLPPPEANAVMARCGVFWSLPA
PEEIRREERREGGRSTRGLEVICDDSFARMFMTEEAIRREMMEKGQGIEA
IWECIIAPESLPLFYEALIESGFCVPLNAIGCSRKVLKMLGRLERDHDTA
VIDTASGSNDGGERRREGKAEGKRLETAPFQTAAAADDDNDLGPLVLLPN
EYEAFITTYVSEDGHHWALTLDVLPLLSAEEEAETAEGDEEGEEEEGSMC
SFMSSLPTSPLADPEDSSWLTESSGTM*
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Synonyms
Publications