|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:1084874..1088012 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03890.1 vs.
Match: EWM26982.1 (hypothetical protein Naga_100127g23 [Nannochloropsis gaditana]) HSP 1 Score: 176.0 bits (445), Expect = 4.500e-40 Identity = 188/511 (36.79%), Postives = 233/511 (45.60%), Query Frame = 0
Query: 310 GGRGEGGGGRGGGSASPVTGGPVDAETARAEPPVLLRTTGERLTGEEGQERKVKRPRR-GEGIEKGGGRMGERDQLQISFPASSLPPP-----SFVPPLSLPISSSSSWIA----PSPMAVLRASMRGA------TPDPELSQQHQQKQEEMQQQHHLNHHHHHHQQQKQEEMQQQHHLNHHHHHHQQQQQQHEQQQSVILLDDPLTGHKVDEYAGRGGRER----------GERREGGWHDLPFDLPPPEANAVMARCGVFWSLPAPEEIRREERREGGRSTRGLEVICDDSFARMFMTEEAIRREMMEKGQGIEAIWECIIAPESLPLFYEALIESGFCVPLNAIGCSRKVLKMLGRLERDHDTAVIDTASGSNDGGERRREGKAEGKRLETAPFQTAAAADDDNDLGPLVLLPNEYEAFITTYVSEDGHHWALTLDVLPLLSAEEEAETAE--GDEEG--------------------------EEEEGSMCSFMSSLPTSPLADPED 767
G R GGGG GGG GG DA R E E + P E K GR S SSL P + PL+ P+++S S P+PM LRAS GA +P L Q H Q + + H + Q + ++ Q++ E ++ V G GRGGRE G +G W LP PEANAVMARCG+FWSLP EE GGR LEV+CD SFA +F+TEE +R +M EKG G++ +WE IIAPESLP +YE LIESGFCVP +GCSRKVLKMLG+ + D + + A+G+ DG + R KRL VLLP E+EAFITTYVSE+G HWA TLDV+PLLS E+E E E DE+ E + M S +SSLPTSP+ PED
Sbjct: 275 GSRRRGGGGGGGGGG----GGEEDAVEGRKE--------------ERNPDHSALTPHALKEPCPKQDGR---------SCNPSSLSPNLRRKRCRLSPLATPLATSPSHHLTPGIPAPMLDLRASTGGAMAYLEPSPPSLLPQPHMQSKSPPPCRAVPPPSRHAQGGTAGRAGRGQEEESRGPRERKEGQEEEEGERKVEGF-----GEAGGPAGGRGGREPQEVETEIYAGGREGKGRWAQNN-RLPSPEANAVMARCGIFWSLPTEEE--------GGREGACLEVVCDKSFAAIFLTEEELRIDMAEKGWGVDVLWESIIAPESLPTYYEGLIESGFCVPPGQVGCSRKVLKMLGKADFDVRSLEDNRATGNADGAQPAR------KRLRR------------------VLLPEEHEAFITTYVSENGRHWAFTLDVIPLLSGEDEDEDEETKPDEQDAVLGVRDLHMPPVTRFLNSRGCLGDFEGVDMDMSSNISSLPTSPMVGPED 720
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03890.1 ID=NO07G03890.1|Name=NO07G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp ATGGCTGCGACCTCCATACTTGTGTCTAAAGAGGTTGAGGCCCCTCTCCC CCCCCCATCATGGTCGTCTGAGGGCGAGCCCGCTTCGGCAGCAATAGCAG CAGTAAACGCCGACAGGAGCGGGGGCGGCGCTGGCACTCGGGAGGGAACT AGGAACATTAGAAGCACCTCCAGCAGCAGCCAAGGCTACTATATACCTCA TCAGTCACCTTTAGGACCACGGATAGGGCGGTCTTCGCATCAGGATTCAC CACCAGCACCCCCCATTTCTTCCCGGCCGAAGTACCAGCACCAGCATCAG CACATGCAATTACCGCAAAGTCACCAGCACCAGCATTACCAGCGCTACCA CTACTACTACCAGTACCAGCATGAGCCTCAAAGCATGTCAGGGGGAGGGC CACCATGGCCAACGCTTATGTCGTCGGTGCCCTTACCGCCTTCTGTCCAG CCCCCCAACCATCCACCAGACATGCAGATCCCTCCTACCTCCCCGATGAT CCTGCAGGATAGACAAGAGAGAGGAGAGGGGAGGAAGAGAGGAAAGTTCC AACATCAACACCAGCAGCAGCTAGAGCAGCTGCGAATAGGGGAGATGAAT GTGGGGTTTGAAGGAGGAGAGGAGCAGCATCAGCAGCAGTCACCGTCTGC TTCGCCTGTGGGGGCGACTGCATTGGCATGGGTTATGGGGCTTGGACTGA GGCCGTCCCGTTGCTTAACATTCATCACGTATCTGACGCAAGGCCATCTT GTCATTGATAGGGCGCGAAGCCTCTTGCAAGCCTGGCATCTCTTCGACGG CCACAACTCCGATCGTGACTTCACGCAAGGCCATCTGCACCTCTACTCTT TTATCCTGGGTTTCATCCCCTATGACCTCCCTTCTTCCCTCCCTCATGTG GTTTTAAGATCTCCGCCTTCAGTAGGAGGAGGACGAGGTGAGGGAGGGGG AGGACGAGGTGGAGGAAGTGCTTCGCCTGTTACCGGCGGTCCAGTGGATG CAGAAACAGCAAGAGCAGAGCCTCCTGTCCTCTTGCGCACCACAGGGGAA AGGCTTACAGGTGAAGAAGGACAAGAAAGAAAAGTAAAGCGGCCACGAAG GGGAGAAGGGATAGAAAAGGGAGGAGGAAGGATGGGGGAGAGAGATCAAC TCCAAATCAGCTTTCCTGCCTCCTCTCTCCCTCCTCCTTCTTTCGTCCCT CCTCTTTCTCTGCCCATCTCTTCTTCCTCTTCTTGGATCGCCCCCTCTCC TATGGCTGTGCTTCGTGCCTCCATGAGAGGCGCCACTCCCGACCCGGAAC TTTCGCAGCAGCACCAGCAGAAGCAGGAGGAGATGCAACAGCAGCACCAC CTTAATCACCACCACCACCACCACCAGCAGCAGAAGCAGGAGGAGATGCA ACAGCAGCACCACCTTAATCACCACCACCACCACCACCAGCAGCAGCAGC AGCAGCACGAACAGCAGCAGTCAGTCATCCTCCTTGATGACCCTCTTACA GGTCACAAAGTGGATGAATACGCGGGTCGTGGCGGCAGAGAAAGAGGCGA AAGGAGGGAGGGAGGATGGCATGACTTGCCTTTTGACCTGCCCCCTCCCG AGGCCAACGCTGTGATGGCCCGATGTGGAGTGTTCTGGAGCCTACCTGCT CCGGAGGAGATAAGGAGGGAGGAAAGGAGGGAAGGAGGTCGCTCTACCCG TGGGCTGGAGGTCATCTGTGACGATTCTTTTGCAAGGATGTTCATGACAG AGGAGGCCATCCGGAGGGAGATGATGGAAAAGGGTCAGGGGATTGAAGCG ATATGGGAATGCATCATCGCACCGGAGTCCCTGCCTTTGTTCTATGAAGC TCTGATCGAGTCGGGGTTTTGCGTTCCCCTCAACGCTATTGGCTGCTCCC GGAAAGTGCTCAAGATGCTCGGCCGACTCGAGAGGGACCATGACACTGCT GTCATTGACACCGCTAGTGGTAGCAATGATGGGGGGGAAAGAAGACGAGA AGGAAAAGCAGAAGGAAAACGACTCGAAACAGCACCTTTTCAAACAGCAG CAGCAGCAGATGATGACAATGATCTCGGTCCTCTTGTCCTCTTGCCTAAC GAATACGAGGCGTTTATCACCACCTACGTATCCGAAGACGGACATCACTG GGCCTTAACCCTGGACGTACTGCCCTTGCTCTCGGCCGAGGAGGAAGCGG AGACAGCTGAGGGGGATGAGGAGGGGGAGGAAGAGGAAGGGAGCATGTGC TCCTTCATGTCTTCTCTGCCGACGTCACCTTTGGCGGACCCGGAGGATTC GAGTTGGCTCACTGAATCATCCGGGACGATGTAG back to topprotein sequence of NO07G03890.1 >NO07G03890.1-protein ID=NO07G03890.1-protein|Name=NO07G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=778bp MAATSILVSKEVEAPLPPPSWSSEGEPASAAIAAVNADRSGGGAGTREGT RNIRSTSSSSQGYYIPHQSPLGPRIGRSSHQDSPPAPPISSRPKYQHQHQ HMQLPQSHQHQHYQRYHYYYQYQHEPQSMSGGGPPWPTLMSSVPLPPSVQ PPNHPPDMQIPPTSPMILQDRQERGEGRKRGKFQHQHQQQLEQLRIGEMN VGFEGGEEQHQQQSPSASPVGATALAWVMGLGLRPSRCLTFITYLTQGHL VIDRARSLLQAWHLFDGHNSDRDFTQGHLHLYSFILGFIPYDLPSSLPHV VLRSPPSVGGGRGEGGGGRGGGSASPVTGGPVDAETARAEPPVLLRTTGE RLTGEEGQERKVKRPRRGEGIEKGGGRMGERDQLQISFPASSLPPPSFVP PLSLPISSSSSWIAPSPMAVLRASMRGATPDPELSQQHQQKQEEMQQQHH LNHHHHHHQQQKQEEMQQQHHLNHHHHHHQQQQQQHEQQQSVILLDDPLT GHKVDEYAGRGGRERGERREGGWHDLPFDLPPPEANAVMARCGVFWSLPA PEEIRREERREGGRSTRGLEVICDDSFARMFMTEEAIRREMMEKGQGIEA IWECIIAPESLPLFYEALIESGFCVPLNAIGCSRKVLKMLGRLERDHDTA VIDTASGSNDGGERRREGKAEGKRLETAPFQTAAAADDDNDLGPLVLLPN EYEAFITTYVSEDGHHWALTLDVLPLLSAEEEAETAEGDEEGEEEEGSMC SFMSSLPTSPLADPEDSSWLTESSGTM* back to topmRNA from alignment at chr7:1084874..1088012+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03890.1 ID=NO07G03890.1|Name=NO07G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=3139bp|location=Sequence derived from alignment at chr7:1084874..1088012+ (Nannochloropsis oceanica) ATGGCTGCGACCTCCATACTTGTGTCTAAAGAGGTTGAGGCCCCTCTCCC
CCCCCCATCATGGTCGTCTGAGGGCGAGCCCGCTTCGGCAGCAATAGCAG
CAGTAAACGCCGACAGGAGCGGGGGCGGCGCTGGCACTCGGGAGGGAACT
AGGAACATTAGAAGCACCTCCAGCAGCAGCCAAGGCTACTATATACCTCA
TCAGTCACCTTTAGGACCACGGATAGGGCGGTCTTCGCATCAGGATTCAC
CACCAGCACCCCCCATTTCTTCCCGGCCGAAGTACCAGCACCAGCATCAG
CACATGCAATTACCGCAAAGTCACCAGCACCAGCATTACCAGCGCTACCA
CTACTACTACCAGTACCAGCATGAGCCTCAAAGCATGTCAGGGGGAGGGC
CACCATGGCCAACGCTTATGTCGTCGGTGCCCTTACCGCCTTCTGTCCAG
CCCCCCAACCATCCACCAGACATGCAGATCCCTCCTACCTCCCCGATGAT
CCTGCAGGATAGACAAGAGAGAGGAGAGGGGAGGAAGAGAGGAAAGTTCC
AACATCAACACCAGCAGCAGCTAGAGCAGCTGCGAATAGGGGAGATGAAT
GTGGGGTTTGAAGGAGGAGAGGAGCAGCATCAGCAGCAGTCACCGTCTGC
TTCGCCTGTGGGGGCGACTGCATTGGCATGGGTTATGGGGCTTGGACTGA
GGCCGTCCCGTTGCTTAACATTCATCACGTATCTGACGCAAGGCCATCTT
GTCATTGATAGGGCGCGAAGCCTCTTGTAAGTATTTTGGGGGGGAATTAT
CGTTTGTTGATTGCTTTCCTTGTATTTGCCCACATATTCAGATCAGGCGA
ACGCAGTTTTAGGAGTTTTAAGCAACCTACCGACAGAAGTGCCTCTTTCC
TGAACAAGCGTTTATGTGGGCCTTTATCAAATCAGTTTTCCGTAGCCACA
TGCGTGCTTGTCATTCACCTATTTACCCTTGCGCTGCACTGTGTATGTCA
CCCTTTTCTCCACCACTCCTGTCATTGCCGACGCGCCTTCACACATCCAC
AACATCTCACTTTTCCTTCTGTTCGCGCTTTTATTAAGACCCCCTCCCCC
TTGACTCTCTTCCACCTCCCTTCTCCCCAATTGCCTGATCCAACAGGCAA
GCCTGGCATCTCTTCGACGGCCACAACTCCGATCGTGACTTCACGCAAGG
CCATCTGCACCTCTACTCTTTTATCCTGGGTTTCATCCCCTATGACCTCC
CTTCTTCCCTCCCTCATGTGGTTTTAAGATCTCCGCCTTCAGTAGGAGGA
GGACGAGGTGAGGGAGGGGGAGGACGAGGTGGAGGAAGTGCTTCGCCTGT
TACCGGCGGTCCAGTGGATGCAGAAACAGCAAGAGCAGAGCCTCCTGTCC
TCTTGCGCACCACAGGGGAAAGGCTTACAGGTGAAGAAGGACAAGAAAGA
AAAGTAAAGCGGCCACGAAGGGGAGAAGGGATAGAAAAGGGAGGAGGAAG
GATGGGGGAGAGAGATCAACTCCAAATCAGCTTTCCTGCCTCCTCTCTCC
CTCCTCCTTCTTTCGTCCCTCCTCTTTCTCTGCCCATCTCTTCTTCCTCT
TCTTGGATCGCCCCCTCTCCTATGGCTGTGCTTCGTGCCTCCATGAGAGG
CGCCACTCCCGACCCGGAACTTTCGCAGCAGCACCAGCAGAAGCAGGAGG
AGATGCAACAGCAGCACCACCTTAATCACCACCACCACCACCACCAGCAG
CAGAAGCAGGAGGAGATGCAACAGCAGCACCACCTTAATCACCACCACCA
CCACCACCAGCAGCAGCAGCAGCAGCACGAACAGCAGCAGTCAGTCATCC
TCCTTGATGACCCTCTTACAGGTCACAAAGTGGATGAATACGCGGGTCGT
GGCGGCAGAGAAAGAGGCGAAAGGAGGGAGGGAGGATGGCATGACTTGCC
TTTTGACCTGCCCCCTCCCGAGGCCAACGCTGTGATGGCCCGATGTGGAG
TGTTCTGGAGCCTACCTGCTCCGGAGGAGATAAGGAGGGAGGAAAGGAGG
GAAGGAGGTCGCTCTACCCGTGGGCTGGAGGTCATCTGTGACGATTCTTT
TGCAAGGATGTTCATGACAGAGGAGGCCATCCGGAGGGAGATGATGGAAA
AGGGTCAGGGGATTGAAGCGATATGGGAATGGTGAGGAGGGAGGGGGGAG
AAAGGAAAGGAGGGAGGGGGGGGGAAAGGGGGTTTCGGTTACAGTGGTTG
CTTTGGTCGTTCAGATGGGGGAAAAGAGTGTCCCTTATCGATCATCGGCG
GACCCACGTGCTTTACGTCCTCTACACGTATGGCACAGTCTGATCCCGTC
CCTCCCTCCCTCCCGCACTCCCCAACAGCATCATCGCACCGGAGTCCCTG
CCTTTGTTCTATGAAGCTCTGATCGAGTCGGGGTTTTGCGTTCCCCTCAA
CGCTATTGGCTGCTCCCGGAAAGTGCTCAAGGTGAGGAAAGAAGAAGAGG
AGGAAGAATGAGGAAGGGAGAGAAGGAGGGAGGGGGGAGGGGGGATCTCC
CTTTGTAGAGGTATGCACGAGAGAGGAAGAAGAGCGAGAAACACCGAGAA
GAGCTCTCGCATGCACAAAAGCTTCGATTATACGCCTTTGAGAAGCACAT
GTGTTAGACATGCACCCCATTTCCTCTCCTCACGCCCTCCCTCCCTCCTA
TCCCCCCTCTGCTTTGCAGATGCTCGGCCGACTCGAGAGGGACCATGACA
CTGCTGTCATTGACACCGCTAGTGGTAGCAATGATGGGGGGGAAAGAAGA
CGAGAAGGAAAAGCAGAAGGAAAACGACTCGAAACAGCACCTTTTCAAAC
AGCAGCAGCAGCAGATGATGACAATGATCTCGGTCCTCTTGTCCTCTTGC
CTAACGAATACGAGGCGTTTATCACCACCTACGTATCCGAAGACGGACAT
CACTGGGCCTTAACCCTGGACGTACTGCCCTTGCTCTCGGCCGAGGAGGA
AGCGGAGACAGCTGAGGGGGATGAGGAGGGGGAGGAAGAGGAAGGGAGCA
TGTGCTCCTTCATGTCTTCTCTGCCGACGTCACCTTTGGCGGACCCGGAG
GATTCGAGTTGGCTCACTGAATCATCCGGGACGATGTAG back to topCoding sequence (CDS) from alignment at chr7:1084874..1088012+ >NO07G03890.1 ID=NO07G03890.1|Name=NO07G03890.1|organism=Nannochloropsis oceanica|type=CDS|length=2334bp|location=Sequence derived from alignment at chr7:1084874..1088012+ (Nannochloropsis oceanica) ATGGCTGCGACCTCCATACTTGTGTCTAAAGAGGTTGAGGCCCCTCTCCC CCCCCCATCATGGTCGTCTGAGGGCGAGCCCGCTTCGGCAGCAATAGCAG CAGTAAACGCCGACAGGAGCGGGGGCGGCGCTGGCACTCGGGAGGGAACT AGGAACATTAGAAGCACCTCCAGCAGCAGCCAAGGCTACTATATACCTCA TCAGTCACCTTTAGGACCACGGATAGGGCGGTCTTCGCATCAGGATTCAC CACCAGCACCCCCCATTTCTTCCCGGCCGAAGTACCAGCACCAGCATCAG CACATGCAATTACCGCAAAGTCACCAGCACCAGCATTACCAGCGCTACCA CTACTACTACCAGTACCAGCATGAGCCTCAAAGCATGTCAGGGGGAGGGC CACCATGGCCAACGCTTATGTCGTCGGTGCCCTTACCGCCTTCTGTCCAG CCCCCCAACCATCCACCAGACATGCAGATCCCTCCTACCTCCCCGATGAT CCTGCAGGATAGACAAGAGAGAGGAGAGGGGAGGAAGAGAGGAAAGTTCC AACATCAACACCAGCAGCAGCTAGAGCAGCTGCGAATAGGGGAGATGAAT GTGGGGTTTGAAGGAGGAGAGGAGCAGCATCAGCAGCAGTCACCGTCTGC TTCGCCTGTGGGGGCGACTGCATTGGCATGGGTTATGGGGCTTGGACTGA GGCCGTCCCGTTGCTTAACATTCATCACGTATCTGACGCAAGGCCATCTT GTCATTGATAGGGCGCGAAGCCTCTTGCAAGCCTGGCATCTCTTCGACGG CCACAACTCCGATCGTGACTTCACGCAAGGCCATCTGCACCTCTACTCTT TTATCCTGGGTTTCATCCCCTATGACCTCCCTTCTTCCCTCCCTCATGTG GTTTTAAGATCTCCGCCTTCAGTAGGAGGAGGACGAGGTGAGGGAGGGGG AGGACGAGGTGGAGGAAGTGCTTCGCCTGTTACCGGCGGTCCAGTGGATG CAGAAACAGCAAGAGCAGAGCCTCCTGTCCTCTTGCGCACCACAGGGGAA AGGCTTACAGGTGAAGAAGGACAAGAAAGAAAAGTAAAGCGGCCACGAAG GGGAGAAGGGATAGAAAAGGGAGGAGGAAGGATGGGGGAGAGAGATCAAC TCCAAATCAGCTTTCCTGCCTCCTCTCTCCCTCCTCCTTCTTTCGTCCCT CCTCTTTCTCTGCCCATCTCTTCTTCCTCTTCTTGGATCGCCCCCTCTCC TATGGCTGTGCTTCGTGCCTCCATGAGAGGCGCCACTCCCGACCCGGAAC TTTCGCAGCAGCACCAGCAGAAGCAGGAGGAGATGCAACAGCAGCACCAC CTTAATCACCACCACCACCACCACCAGCAGCAGAAGCAGGAGGAGATGCA ACAGCAGCACCACCTTAATCACCACCACCACCACCACCAGCAGCAGCAGC AGCAGCACGAACAGCAGCAGTCAGTCATCCTCCTTGATGACCCTCTTACA GGTCACAAAGTGGATGAATACGCGGGTCGTGGCGGCAGAGAAAGAGGCGA AAGGAGGGAGGGAGGATGGCATGACTTGCCTTTTGACCTGCCCCCTCCCG AGGCCAACGCTGTGATGGCCCGATGTGGAGTGTTCTGGAGCCTACCTGCT CCGGAGGAGATAAGGAGGGAGGAAAGGAGGGAAGGAGGTCGCTCTACCCG TGGGCTGGAGGTCATCTGTGACGATTCTTTTGCAAGGATGTTCATGACAG AGGAGGCCATCCGGAGGGAGATGATGGAAAAGGGTCAGGGGATTGAAGCG ATATGGGAATGCATCATCGCACCGGAGTCCCTGCCTTTGTTCTATGAAGC TCTGATCGAGTCGGGGTTTTGCGTTCCCCTCAACGCTATTGGCTGCTCCC GGAAAGTGCTCAAGATGCTCGGCCGACTCGAGAGGGACCATGACACTGCT GTCATTGACACCGCTAGTGGTAGCAATGATGGGGGGGAAAGAAGACGAGA AGGAAAAGCAGAAGGAAAACGACTCGAAACAGCACCTTTTCAAACAGCAG CAGCAGCAGATGATGACAATGATCTCGGTCCTCTTGTCCTCTTGCCTAAC GAATACGAGGCGTTTATCACCACCTACGTATCCGAAGACGGACATCACTG GGCCTTAACCCTGGACGTACTGCCCTTGCTCTCGGCCGAGGAGGAAGCGG AGACAGCTGAGGGGGATGAGGAGGGGGAGGAAGAGGAAGGGAGCATGTGC TCCTTCATGTCTTCTCTGCCGACGTCACCTTTGGCGGACCCGGAGGATTC GAGTTGGCTCACTGAATCATCCGGGACGATGTAG back to top
|