NO07G03490, NO07G03490 (gene) Nannochloropsis oceanica

Overview
NameNO07G03490
Unique NameNO07G03490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr7:967122..967709 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:967122..967709 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO07G03490 vs. NCBI_GenBank
Match: XP_005854433.1 (hypothetical protein NGA_2002000 [Nannochloropsis gaditana CCMP526] >EKU21923.1 hypothetical protein NGA_2002000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.4 bits (311), Expect = 3.900e-25
Identity = 109/195 (55.90%), Postives = 124/195 (63.59%), Query Frame = 0 
Query:    1 MAMHKLYIFSLALVAGMTCSNAFVPKIVPSSGKNSLVGCRTPSVRLTRQHSLAPLPKTTSMALFAGNDNVEEEEEIGPLGLAATALGLVAAPVVLYSEYVLKTTGCGLPAGPGGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAVVLGLTIKDFGSVPEAVPVDGGRCSGI 196
            M  +K  I  ++L+  ++   AFVP+    S  + LV  R PS       S A  P  TS  L   +   +E EEIG  GLA TALGLVA PVVLYSEYVLKTTGCGLPAGPGG+L                      XXXXXXXXXXXXXXXXXXXXXXXXXXXVGAVVLG TI+ +GSVPEAVP++GGRCS I
Sbjct:    1 MTANKFIILCVSLLVVISSIEAFVPR----STSHRLVSKRLPS------PSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185
[Close]
BLAST of NO07G03490 vs. NCBI_GenBank
Match: EWM27016.1 (hypothetical protein Naga_100444g5 [Nannochloropsis gaditana])

HSP 1 Score: 124.0 bits (310), Expect = 5.100e-25
Identity = 109/195 (55.90%), Postives = 124/195 (63.59%), Query Frame = 0 
Query:    1 MAMHKLYIFSLALVAGMTCSNAFVPKIVPSSGKNSLVGCRTPSVRLTRQHSLAPLPKTTSMALFAGNDNVEEEEEIGPLGLAATALGLVAAPVVLYSEYVLKTTGCGLPAGPGGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAVVLGLTIKDFGSVPEAVPVDGGRCSGI 196
            M  +K  I  ++L+  ++   AFVP+    S  + LV  R PS       S A  P  TS  L   +   +E EEIG  GLA TALGLVA PVVLYSEYVLKTTGCGLPAGPGG+L                      XXXXXXXXXXXXXXXXXXXXXXXXXXXVGAVVLG TI+ +GSVPEAVP++GGRCS I
Sbjct:    1 MTANKFTILCVSLLVVISSIEAFVPR----STSHRLVSKRLPS------PSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185
[Close]
BLAST of NO07G03490 vs. NCBI_GenBank
Match: XP_005828862.1 (hypothetical protein GUITHDRAFT_159869 [Guillardia theta CCMP2712] >EKX41882.1 hypothetical protein GUITHDRAFT_159869 [Guillardia theta CCMP2712])

HSP 1 Score: 68.2 bits (165), Expect = 3.300e-8
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0 
Query:   94 VLYSEYVLKTTGCGLPAGPGGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAVVLGLTIKDFGSVPEAVPVDGGRCS 194
            +L+SEY LKTTGCGLPAGPGGAL                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G VVLGL IKD+G +P AVP +GG+CS
Sbjct:    1 MLWSEYTLKTTGCGLPAGPGGALGALEGVSYLWVVGLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVVLGLQIKDYGYIPNAVPTEGGKCS 100
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BLAST of NO07G03490 vs. NCBI_GenBank
Match: OAE20774.1 (hypothetical protein AXG93_203s1080 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 65.1 bits (157), Expect = 2.800e-7
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0 
Query:   71 EEEEEIGPLGLAATALGLVAAPVVLYSEYVLKTTGCGLPAGPGGAL 117
            E+ E +GP+G+ A A GLVA PVV +S Y LKTTGCGLP GPGGA+
Sbjct:  108 EDTESVGPVGVGAIAGGLVAVPVVAWSLYTLKTTGCGLPPGPGGAI 153
[Close]
BLAST of NO07G03490 vs. NCBI_GenBank
Match: PTQ28295.1 (hypothetical protein MARPO_0168s0019 [Marchantia polymorpha])

HSP 1 Score: 65.1 bits (157), Expect = 2.800e-7
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0 
Query:   71 EEEEEIGPLGLAATALGLVAAPVVLYSEYVLKTTGCGLPAGPGGAL 117
            E+ E +GP+G+ A A GLVA PVV +S Y LKTTGCGLP GPGGA+
Sbjct:   68 EDTESVGPVGVGAIAGGLVAVPVVAWSLYTLKTTGCGLPPGPGGAI 113
[Close]
BLAST of NO07G03490 vs. NCBI_GenBank
Match: PRW39340.1 (MFS general substrate transporter [Chlorella sorokiniana])

HSP 1 Score: 63.5 bits (153), Expect = 8.100e-7
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 0 
Query:   53 APLPKTTSMALFAGNDNVEEEEEIGPLGLAATALGLVAAPVVLYSEYVLKTTGCGLPAGPGGAL 117
            APL ++    + A  D     E++G  G AA ALGLVA P+VL+SE+ LKTTG GLP GPGGAL
Sbjct:  461 APLRRSARQVVRAAAD-----EDVGTAGKAAIALGLVANPLVLWSEWTLKTTGAGLPPGPGGAL 519
[Close]
BLAST of NO07G03490 vs. NCBI_GenBank
Match: PSC73380.1 (hypothetical protein C2E20_3528 [Micractinium conductrix])

HSP 1 Score: 63.5 bits (153), Expect = 8.100e-7
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 0 
Query:   32 GKNSLVGCRTPSVRLTRQHSLAPLPKTTSMALFAGNDNVEEEEEIGPLGLAATALGLVAAPVVLYSEYVLKTTGCGLPAGPGGAL 117
            G ++ +G R P  R     +++  P+   +A  A        E++G +G AA ALGL+A P+ L+SEY LKTTG GLP GPGGAL
Sbjct:   14 GASAALGRRAPLSR----GAVSAAPRRARVAPVA----AASSEDVGTVGTAAIALGLLANPICLWSEYTLKTTGAGLPPGPGGAL 90
The following BLAST results are available for this feature:
BLAST of NO07G03490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
XP_005854433.13.900e-2555.90hypothetical protein NGA_2002000 [Nannochloropsis ... [more]
EWM27016.15.100e-2555.90hypothetical protein Naga_100444g5 [Nannochloropsi... [more]
XP_005828862.13.300e-871.00hypothetical protein GUITHDRAFT_159869 [Guillardia... [more]
OAE20774.12.800e-765.22hypothetical protein AXG93_203s1080 [Marchantia po... [more]
PTQ28295.12.800e-765.22hypothetical protein MARPO_0168s0019 [Marchantia p... [more]
PRW39340.18.100e-754.69MFS general substrate transporter [Chlorella sorok... [more]
PSC73380.18.100e-743.53hypothetical protein C2E20_3528 [Micractinium cond... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000500NSK000500Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03490.1NO07G03490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581181gene_2687Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100444g5gene3529Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03490.1NO07G03490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03490 ID=NO07G03490|Name=NO07G03490|organism=Nannochloropsis oceanica|type=gene|length=588bp
ATGGCTATGCACAAGCTTTATATCTTTTCCTTGGCTTTAGTGGCGGGTAT
GACCTGTAGCAACGCATTTGTGCCCAAGATAGTACCCTCGTCCGGCAAAA
ACTCCCTTGTCGGCTGTCGAACCCCGTCGGTTCGTTTGACCCGGCAGCAC
TCCCTCGCTCCCTTGCCCAAGACGACTTCCATGGCGCTTTTTGCGGGTAA
TGACAATGTGGAGGAGGAGGAGGAGATTGGGCCCTTGGGACTGGCGGCCA
CCGCGCTGGGACTCGTTGCTGCACCCGTTGTTCTCTACTCTGAATACGTG
CTGAAAACGACGGGGTGTGGTTTGCCTGCTGGGCCTGGCGGAGCATTAGG
AGCTCTCGAAGGGATTTCGTACCTAGTCGTAGTGGGTATTGCTGGGTTTT
CCACCTACAAAAAGGTCAAGACTGGCACTGGATTGCCTGCGGGCCCTGCA
GGGTTGTTGGGTGCGGTTGAGGGCTTGAGCTTCCTTGCTGTCTTGGTGGG
GGCTGTGGTTTTGGGTCTGACAATCAAGGACTTTGGCTCAGTCCCCGAGG
CCGTGCCGGTGGATGGAGGCCGATGCAGTGGCATTTAA
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protein sequence of NO07G03490.1

>NO07G03490.1-protein ID=NO07G03490.1-protein|Name=NO07G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MAMHKLYIFSLALVAGMTCSNAFVPKIVPSSGKNSLVGCRTPSVRLTRQH
SLAPLPKTTSMALFAGNDNVEEEEEIGPLGLAATALGLVAAPVVLYSEYV
LKTTGCGLPAGPGGALGALEGISYLVVVGIAGFSTYKKVKTGTGLPAGPA
GLLGAVEGLSFLAVLVGAVVLGLTIKDFGSVPEAVPVDGGRCSGI*
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Synonyms
Publications