NO07G03490.1, NO07G03490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03490.1
Unique NameNO07G03490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr7:967122..967709 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:967122..967709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03490.1 vs.
Match: XP_005854433.1 (hypothetical protein NGA_2002000 [Nannochloropsis gaditana CCMP526]; EKU21923.1 hypothetical protein NGA_2002000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 221.9 bits (564), Expect = 1.800e-54
Identity = 125/195 (64.10%), Postives = 144/195 (73.85%), Query Frame = 0
Query:    1 MAMHKLYIFSLALVAGMTCSNAFVPKIVPSSGKNSLVGCRTPSVRLTRQHSLAPLPKTTSMALFAGNDNVEEEEEIGPLGLAATALGLVAAPVVLYSEYVLKTTGCGLPAGPGGALGALEGISYLVVVGIAGFSTYKKVKTGTGLPAGPAGLLGAVEGLSFLAVLVGAVVLGLTIKDFGSVPEAVPVDGGRCSGI 196
            M  +K  I  ++L+  ++   AFVP+    S  + LV  R PS       S A  P  TS  L   +   +E EEIG  GLA TALGLVA PVVLYSEYVLKTTGCGLPAGPGG+LGALEGISYLVVVGIAG+S  KK++TGTGLPAGPAGLLGAVEGLSFLA+LVGAVVLG TI+ +GSVPEAVP++GGRCS I
Sbjct:    1 MTANKFIILCVSLLVVISSIEAFVPR----STSHRLVSKRLPSP------SKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185          
The following BLAST results are available for this feature:
BLAST of NO07G03490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854433.11.800e-5464.10hypothetical protein NGA_2002000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03490NO07G03490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03490.1NO07G03490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03490.1.cds1NO07G03490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03490.1 ID=NO07G03490.1|Name=NO07G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=588bp
ATGGCTATGCACAAGCTTTATATCTTTTCCTTGGCTTTAGTGGCGGGTAT
GACCTGTAGCAACGCATTTGTGCCCAAGATAGTACCCTCGTCCGGCAAAA
ACTCCCTTGTCGGCTGTCGAACCCCGTCGGTTCGTTTGACCCGGCAGCAC
TCCCTCGCTCCCTTGCCCAAGACGACTTCCATGGCGCTTTTTGCGGGTAA
TGACAATGTGGAGGAGGAGGAGGAGATTGGGCCCTTGGGACTGGCGGCCA
CCGCGCTGGGACTCGTTGCTGCACCCGTTGTTCTCTACTCTGAATACGTG
CTGAAAACGACGGGGTGTGGTTTGCCTGCTGGGCCTGGCGGAGCATTAGG
AGCTCTCGAAGGGATTTCGTACCTAGTCGTAGTGGGTATTGCTGGGTTTT
CCACCTACAAAAAGGTCAAGACTGGCACTGGATTGCCTGCGGGCCCTGCA
GGGTTGTTGGGTGCGGTTGAGGGCTTGAGCTTCCTTGCTGTCTTGGTGGG
GGCTGTGGTTTTGGGTCTGACAATCAAGGACTTTGGCTCAGTCCCCGAGG
CCGTGCCGGTGGATGGAGGCCGATGCAGTGGCATTTAA
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protein sequence of NO07G03490.1

>NO07G03490.1-protein ID=NO07G03490.1-protein|Name=NO07G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MAMHKLYIFSLALVAGMTCSNAFVPKIVPSSGKNSLVGCRTPSVRLTRQH
SLAPLPKTTSMALFAGNDNVEEEEEIGPLGLAATALGLVAAPVVLYSEYV
LKTTGCGLPAGPGGALGALEGISYLVVVGIAGFSTYKKVKTGTGLPAGPA
GLLGAVEGLSFLAVLVGAVVLGLTIKDFGSVPEAVPVDGGRCSGI*
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mRNA from alignment at chr7:967122..967709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03490.1 ID=NO07G03490.1|Name=NO07G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=588bp|location=Sequence derived from alignment at chr7:967122..967709- (Nannochloropsis oceanica)
ATGGCTATGCACAAGCTTTATATCTTTTCCTTGGCTTTAGTGGCGGGTAT GACCTGTAGCAACGCATTTGTGCCCAAGATAGTACCCTCGTCCGGCAAAA ACTCCCTTGTCGGCTGTCGAACCCCGTCGGTTCGTTTGACCCGGCAGCAC TCCCTCGCTCCCTTGCCCAAGACGACTTCCATGGCGCTTTTTGCGGGTAA TGACAATGTGGAGGAGGAGGAGGAGATTGGGCCCTTGGGACTGGCGGCCA CCGCGCTGGGACTCGTTGCTGCACCCGTTGTTCTCTACTCTGAATACGTG CTGAAAACGACGGGGTGTGGTTTGCCTGCTGGGCCTGGCGGAGCATTAGG AGCTCTCGAAGGGATTTCGTACCTAGTCGTAGTGGGTATTGCTGGGTTTT CCACCTACAAAAAGGTCAAGACTGGCACTGGATTGCCTGCGGGCCCTGCA GGGTTGTTGGGTGCGGTTGAGGGCTTGAGCTTCCTTGCTGTCTTGGTGGG GGCTGTGGTTTTGGGTCTGACAATCAAGGACTTTGGCTCAGTCCCCGAGG CCGTGCCGGTGGATGGAGGCCGATGCAGTGGCATTTAA
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Coding sequence (CDS) from alignment at chr7:967122..967709-

>NO07G03490.1 ID=NO07G03490.1|Name=NO07G03490.1|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at chr7:967122..967709- (Nannochloropsis oceanica)
ATGGCTATGCACAAGCTTTATATCTTTTCCTTGGCTTTAGTGGCGGGTAT
GACCTGTAGCAACGCATTTGTGCCCAAGATAGTACCCTCGTCCGGCAAAA
ACTCCCTTGTCGGCTGTCGAACCCCGTCGGTTCGTTTGACCCGGCAGCAC
TCCCTCGCTCCCTTGCCCAAGACGACTTCCATGGCGCTTTTTGCGGGTAA
TGACAATGTGGAGGAGGAGGAGGAGATTGGGCCCTTGGGACTGGCGGCCA
CCGCGCTGGGACTCGTTGCTGCACCCGTTGTTCTCTACTCTGAATACGTG
CTGAAAACGACGGGGTGTGGTTTGCCTGCTGGGCCTGGCGGAGCATTAGG
AGCTCTCGAAGGGATTTCGTACCTAGTCGTAGTGGGTATTGCTGGGTTTT
CCACCTACAAAAAGGTCAAGACTGGCACTGGATTGCCTGCGGGCCCTGCA
GGGTTGTTGGGTGCGGTTGAGGGCTTGAGCTTCCTTGCTGTCTTGGTGGG
GGCTGTGGTTTTGGGTCTGACAATCAAGGACTTTGGCTCAGTCCCCGAGG
CCGTGCCGGTGGATGGAGGCCGATGCAGTGGCATTTAA
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Synonyms
Publications