NO07G03270, NO07G03270 (gene) Nannochloropsis oceanica

Overview
NameNO07G03270
Unique NameNO07G03270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length947
Alignment locationchr7:904192..905138 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:904192..905138 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G03270 vs. NCBI_GenBank
Match: EWM27056.1 (hypothetical protein Naga_100056g19 [Nannochloropsis gaditana])

HSP 1 Score: 84.3 bits (207), Expect = 5.500e-13
Identity = 65/121 (53.72%), Postives = 74/121 (61.16%), Query Frame = 0 
Query:   45 IDLGASCASDLHQDPLYLQEVESQLESFWVEHMAXXXXXXXXXXXXXXXXRGEGGREEGRDWMENQGFVGVELPSPYSVQGGGRYPSPPPHVQQ-----PQQQHYPGARSPQGMALISSGR 161
            + LG SCASDL QDPLYLQEVE+QLESFWVEHMA     XXXXXXXXXXX    G+ EG D +  Q     + PSPYSVQGG R+    P +       P+ QHY G   P   AL+   R
Sbjct:   83 VGLGESCASDLQQDPLYLQEVENQLESFWVEHMA--AQQXXXXXXXXXXXXXXXGQAEGSDLIYPQSSDPADYPSPYSVQGGSRHDVSAPTLSSQPSSYPESQHY-GRYPPSEYALVPGDR 200
The following BLAST results are available for this feature:
BLAST of NO07G03270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27056.15.500e-1353.72hypothetical protein Naga_100056g19 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000532NSK000532Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03270.1NO07G03270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100056g19gene3504Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03270.1NO07G03270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03270 ID=NO07G03270|Name=NO07G03270|organism=Nannochloropsis oceanica|type=gene|length=947bp
ATGTCGGAGGTTGGGAACGCACAAGAGAAAGAAGAGAAGGATGGAGGAGC
CTTTGAGCAGGAGGAAGAAGTAGCGATAGGAGAGCTTATGGAGACAGGGG
TAGAGCTGGAGGAGGGAGGTTCGGAGGAGGCAATTGATCTAGGGGCGTCG
TGTGCGTCGGATTTGCACCAGGATCCCTTGTACCTGCAGGAAGTGGAGAG
CCAACTGGAGTCGTTCTGGGTGGAGCACATGGCAGCACAACAACAGCAGG
CAGCTGCTGCTTCGGTGTTAGCGGTGACGACGCGAGGAGAAGGGGGGAGG
GAGGAAGGAAGGGATTGGATGGAAAACCAAGGTTTTGTTGGTGTGGAGCT
ACCTAGTCCGTATTCTGTGCAAGGTGGGGGTCGATATCCTTCCCCTCCAC
CACACGTGCAGCAACCGCAGCAGCAGCACTATCCTGGTGCGCGATCCCCG
CAAGGTATGGCCTTAATATCCAGTGGGAGACCGTCCATTCCTCCCCCCCC
TCCTCCCCCTCCTCCGGCCTCTGCTCCCCCAGCAACCACCAGCTCGGTAA
ATGTCTACGGACCTGTGAATGTGTTTATGAACGGGGGGATGGGAGGGAGG
GCTGGAGGAGGGGAGGCGAGGCCGCCGCCATCGTATCAGCCGCAATCGCA
GCAACGACAGCAGCAACAGCAACAACCACCACCACCACCGCCGTCAAAGC
AGTGGGGCGGGCACGGTTACTAAGGAAAGAGGCGGGATTGAACGAGATGG
AAGAGATGTGTGAGGGCCACACGCACACACAAACGTTAGGAAATAGCCAT
GCAAGAAGAGGGAGAGAGACTAAAAGGAGAGACTCAGAGAGGAATGAGAG
ACGAAGAATAACAGCAACAGCGACAGCGGACAGCACCTGACAAAAAAGCA
ACCAAGCAAAAGCCGCAAGGCTTTGAAAGTCAAGGAATAGGATTCCG
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protein sequence of NO07G03270.1

>NO07G03270.1-protein ID=NO07G03270.1-protein|Name=NO07G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSEVGNAQEKEEKDGGAFEQEEEVAIGELMETGVELEEGGSEEAIDLGAS
CASDLHQDPLYLQEVESQLESFWVEHMAAQQQQAAAASVLAVTTRGEGGR
EEGRDWMENQGFVGVELPSPYSVQGGGRYPSPPPHVQQPQQQHYPGARSP
QGMALISSGRPSIPPPPPPPPPASAPPATTSSVNVYGPVNVFMNGGMGGR
AGGGEARPPPSYQPQSQQRQQQQQQPPPPPPSKQWGGHGY*
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Synonyms
Publications