NO07G03270.1, NO07G03270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03270.1
Unique NameNO07G03270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length947
Alignment locationchr7:904192..905138 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:904192..905138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G03270.1 vs.
Match: EWM27056.1 (hypothetical protein Naga_100056g19 [Nannochloropsis gaditana])

HSP 1 Score: 95.5 bits (236), Expect = 2.400e-16
Identity = 71/154 (46.10%), Postives = 84/154 (54.55%), Query Frame = 0 
Query:   14 DGGAFEQEEEVAIGELMETGVELEEGGSEEA--IDLGASCASDLHQDPLYLQEVESQLESFWVEHMAAQQQQAAAASVLAVTTRGEGGREEGRDWMENQGFVGVELPSPYSVQGGGRYPSPPPHVQQ-----PQQQHYPGARSPQGMALISSGR 161
            D     +E+E   GE    G    EG  E+A  + LG SCASDL QDPLYLQEVE+QLESFWVEHMAA  QQAAA+        G  G+ EG D +  Q     + PSPYSVQGG R+    P +       P+ QHY G   P   AL+   R
Sbjct:   54 DWNQVREEQESPGGEGSGGG----EGEGEDAGEVGLGESCASDLQQDPLYLQEVENQLESFWVEHMAA--QQAAASGNAGGEDGGGRGQAEGSDLIYPQSSDPADYPSPYSVQGGSRHDVSAPTLSSQPSSYPESQHY-GRYPPSEYALVPGDR 200
The following BLAST results are available for this feature:
BLAST of NO07G03270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27056.12.400e-1646.10hypothetical protein Naga_100056g19 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03270NO07G03270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03270.1NO07G03270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03270.1.cds1NO07G03270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03270.1 ID=NO07G03270.1|Name=NO07G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=947bp
ATGTCGGAGGTTGGGAACGCACAAGAGAAAGAAGAGAAGGATGGAGGAGC
CTTTGAGCAGGAGGAAGAAGTAGCGATAGGAGAGCTTATGGAGACAGGGG
TAGAGCTGGAGGAGGGAGGTTCGGAGGAGGCAATTGATCTAGGGGCGTCG
TGTGCGTCGGATTTGCACCAGGATCCCTTGTACCTGCAGGAAGTGGAGAG
CCAACTGGAGTCGTTCTGGGTGGAGCACATGGCAGCACAACAACAGCAGG
CAGCTGCTGCTTCGGTGTTAGCGGTGACGACGCGAGGAGAAGGGGGGAGG
GAGGAAGGAAGGGATTGGATGGAAAACCAAGGTTTTGTTGGTGTGGAGCT
ACCTAGTCCGTATTCTGTGCAAGGTGGGGGTCGATATCCTTCCCCTCCAC
CACACGTGCAGCAACCGCAGCAGCAGCACTATCCTGGTGCGCGATCCCCG
CAAGGTATGGCCTTAATATCCAGTGGGAGACCGTCCATTCCTCCCCCCCC
TCCTCCCCCTCCTCCGGCCTCTGCTCCCCCAGCAACCACCAGCTCGGTAA
ATGTCTACGGACCTGTGAATGTGTTTATGAACGGGGGGATGGGAGGGAGG
GCTGGAGGAGGGGAGGCGAGGCCGCCGCCATCGTATCAGCCGCAATCGCA
GCAACGACAGCAGCAACAGCAACAACCACCACCACCACCGCCGTCAAAGC
AGTGGGGCGGGCACGGTTACTAAGGAAAGAGGCGGGATTGAACGAGATGG
AAGAGATGTGTGAGGGCCACACGCACACACAAACGTTAGGAAATAGCCAT
GCAAGAAGAGGGAGAGAGACTAAAAGGAGAGACTCAGAGAGGAATGAGAG
ACGAAGAATAACAGCAACAGCGACAGCGGACAGCACCTGACAAAAAAGCA
ACCAAGCAAAAGCCGCAAGGCTTTGAAAGTCAAGGAATAGGATTCCG
back to top

protein sequence of NO07G03270.1

>NO07G03270.1-protein ID=NO07G03270.1-protein|Name=NO07G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSEVGNAQEKEEKDGGAFEQEEEVAIGELMETGVELEEGGSEEAIDLGAS
CASDLHQDPLYLQEVESQLESFWVEHMAAQQQQAAAASVLAVTTRGEGGR
EEGRDWMENQGFVGVELPSPYSVQGGGRYPSPPPHVQQPQQQHYPGARSP
QGMALISSGRPSIPPPPPPPPPASAPPATTSSVNVYGPVNVFMNGGMGGR
AGGGEARPPPSYQPQSQQRQQQQQQPPPPPPSKQWGGHGY*
back to top

mRNA from alignment at chr7:904192..905138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03270.1 ID=NO07G03270.1|Name=NO07G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=947bp|location=Sequence derived from alignment at chr7:904192..905138- (Nannochloropsis oceanica)
ATGTCGGAGGTTGGGAACGCACAAGAGAAAGAAGAGAAGGATGGAGGAGC
CTTTGAGCAGGAGGAAGAAGTAGCGATAGGAGAGCTTATGGAGACAGGGG
TAGAGCTGGAGGAGGGAGGTTCGGAGGAGGCAATTGATCTAGGGGCGTCG
TGTGCGTCGGATTTGCACCAGGATCCCTTGTACCTGCAGGAAGTGGAGAG
CCAACTGGAGTCGTTCTGGGTGGAGCACATGGCAGCACAACAACAGCAGG
CAGCTGCTGCTTCGGTGTTAGCGGTGACGACGCGAGGAGAAGGGGGGAGG
GAGGAAGGAAGGGATTGGATGGAAAACCAAGGTTTTGTTGGTGTGGAGCT
ACCTAGTCCGTATTCTGTGCAAGGTGGGGGTCGATATCCTTCCCCTCCAC
CACACGTGCAGCAACCGCAGCAGCAGCACTATCCTGGTGCGCGATCCCCG
CAAGGTATGGCCTTAATATCCAGTGGGAGACCGTCCATTCCTCCCCCCCC
TCCTCCCCCTCCTCCGGCCTCTGCTCCCCCAGCAACCACCAGCTCGGTAA
ATGTCTACGGACCTGTGAATGTGTTTATGAACGGGGGGATGGGAGGGAGG
GCTGGAGGAGGGGAGGCGAGGCCGCCGCCATCGTATCAGCCGCAATCGCA
GCAACGACAGCAGCAACAGCAACAACCACCACCACCACCGCCGTCAAAGC
AGTGGGGCGGGCACGGTTACTAAGGAAAGAGGCGGGATTGAACGAGATGG
AAGAGATGTGTGAGGGCCACACGCACACACAAACGTTAGGAAATAGCCAT
GCAAGAAGAGGGAGAGAGACTAAAAGGAGAGACTCAGAGAGGAATGAGAG
ACGAAGAATAACAGCAACAGCGACAGCGGACAGCACCTGACAAAAAAGCA
ACCAAGCAAAAGCCGCAAGGCTTTGAAAGTCAAGGAATAGGATTCCG
back to top

Coding sequence (CDS) from alignment at chr7:904192..905138-

>NO07G03270.1 ID=NO07G03270.1|Name=NO07G03270.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr7:904192..905138- (Nannochloropsis oceanica)
ATGTCGGAGGTTGGGAACGCACAAGAGAAAGAAGAGAAGGATGGAGGAGC
CTTTGAGCAGGAGGAAGAAGTAGCGATAGGAGAGCTTATGGAGACAGGGG
TAGAGCTGGAGGAGGGAGGTTCGGAGGAGGCAATTGATCTAGGGGCGTCG
TGTGCGTCGGATTTGCACCAGGATCCCTTGTACCTGCAGGAAGTGGAGAG
CCAACTGGAGTCGTTCTGGGTGGAGCACATGGCAGCACAACAACAGCAGG
CAGCTGCTGCTTCGGTGTTAGCGGTGACGACGCGAGGAGAAGGGGGGAGG
GAGGAAGGAAGGGATTGGATGGAAAACCAAGGTTTTGTTGGTGTGGAGCT
ACCTAGTCCGTATTCTGTGCAAGGTGGGGGTCGATATCCTTCCCCTCCAC
CACACGTGCAGCAACCGCAGCAGCAGCACTATCCTGGTGCGCGATCCCCG
CAAGGTATGGCCTTAATATCCAGTGGGAGACCGTCCATTCCTCCCCCCCC
TCCTCCCCCTCCTCCGGCCTCTGCTCCCCCAGCAACCACCAGCTCGGTAA
ATGTCTACGGACCTGTGAATGTGTTTATGAACGGGGGGATGGGAGGGAGG
GCTGGAGGAGGGGAGGCGAGGCCGCCGCCATCGTATCAGCCGCAATCGCA
GCAACGACAGCAGCAACAGCAACAACCACCACCACCACCGCCGTCAAAGC
AGTGGGGCGGGCACGGTTACTAA
back to top
Synonyms
Publications