NO07G02890, NO07G02890 (gene) Nannochloropsis oceanica

Overview
NameNO07G02890
Unique NameNO07G02890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1475
Alignment locationchr7:815611..817085 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:815611..817085 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G02890 vs. NCBI_GenBank
Match: EWM27120.1 (hypothetical protein Naga_100046g21 [Nannochloropsis gaditana])

HSP 1 Score: 246.5 bits (628), Expect = 1.100e-61
Identity = 125/228 (54.82%), Postives = 148/228 (64.91%), Query Frame = 0 
Query:  103 WWRWTSAEQREFIETQ-TVKGTPPSSPSXXXXXXXXXXXXXLTHMQKVIENPATNPDIVVLTRFFRLRHPFPFHALTTRLAYHLATGHVTLAETPWLESNDLYRWSIPFFLRVLLKLGRPLYAPLFCLKWMGLRTMVLWRSFSHFIFPSAPYVMLFAFRAIYMLAACALVTVALDELMRPAFQWMFSKAFGGQRPYPEISVYDLAEAGRRRGKRVEMGGGLSWRDRLW 330
            WWRWT  EQR+F+E Q   +G  P   S                    + +P+   D   L   F LR+PFP H LTTRLAYH + G   LAE PWLE N+LYRWSIPFF+R  LK  RPLYAP+FC KW+GLR M+LWRSFS F+ PS PYV LF FRAIYMLAACALVTVALDELM P  +W ++  + G RP P++S Y+LAEA  R+G   E  GG +WRDRLW
Sbjct:  176 WWRWTPTEQRDFLEKQIRDRGHSPQDASL------------------TLASPSQPLDPPFL---FHLRYPFPLHRLTTRLAYHPSAGRFALAEKPWLEENELYRWSIPFFIRFFLKAARPLYAPIFCFKWLGLRAMILWRSFSLFVLPSVPYVALFTFRAIYMLAACALVTVALDELMHPLLEWTYNIFYKGHRPLPDLSYYNLAEAWSRKG--TEGAGGYTWRDRLW 380
The following BLAST results are available for this feature:
BLAST of NO07G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27120.11.100e-6154.82hypothetical protein Naga_100046g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000591NSK000591Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02890.1NO07G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564135gene_2619Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g21gene3444Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02890.1NO07G02890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02890 ID=NO07G02890|Name=NO07G02890|organism=Nannochloropsis oceanica|type=gene|length=1475bp
CAATCAATCAATCAATCAATCAATCAATCAATCAAAAGTACACTTATAAT
GCTCATTGGCAACCTGATTTTCATTCATATTAGTGTGGGCCAGTTGTCCC
CGGGTACCTATTAAATGCGCACAAAAATGTCTCGTGCTTGCAGCACTTCA
ATCCCCAGGGGGCTACCCACGTCAAGgtctgtcttcctgctcctcctctt
ctctacgattactgtatttgccttccacccccacaccaccaagcgcgtct
tcattgccatcactcccaccgtgtcgagcagGAGAGCGGGATTCCAACCC
GGACGATTGGAAACCTGGTGGCGACGGCATTATGGAGCGgtacgtaagtt
agagggagtagtgcgtcctcctcctccccgctcacctttcctataccgtc
ataaagCATCCACAAATCATCTGCTATAGAAGCTCTATAAGCAGCACCAG
GAAAGATACTGGTACGGGCGGTGTCTCTCAAGCACCCATTGAATTCCAGG
ACGATTGGAAGCGTTTGATGgtaggtagcaatgttaagaggtcagctttc
cacgattcgatcacttaaagccaaatacttaacagGAAGGAGGCATCTCC
ATCAATCTTTCCGCAATCTTGAACAAAAGCGATATTTTGCATAACGAGCA
CGgtaccgtctttctcgaagcattcaagcggacccccccccctcctcctc
ctccatcacgactctgcagcgcttcctcaaaatgggccataaaaccccaa
cacccgatggcctcattgaaatagagtcagGACGCTGGTGGCGCTGGACG
TCAGCAGAACAAAGGGAGTTCATCGAAACACAAACCGTGAAAGGGACACC
TCCCTCCTCTCCTTCCTCTTCCTCTACCTCCCCCTTCTCCTCCACAACTG
CCCCACTTACTCACATGCAGAAAGTCATCGAAAATCCAGCGACCAATCCC
GATATTGTCGTTCTTACTCGATTCTTTCGACTGCGCCACCCTTTCCCCTT
CCATGCATTGACTACTCGCCTCGCCTATCACCTAGCCACGGGCCATGTGA
CCCTCGCCGAGACCCCCTGGCTGGAAAGCAACGACCTCTACCGCTGGTCG
ATCCCGTTCTTCCTTCGCGTGCTCCTCAAGCTTGGAAGGCCATTGTACGC
ACCTCTTTTTTGCTTGAAATGGATGGGTTTGCGAACTATGGTCCTGTGGA
GGTCTTTCTCACACTTTATTTTTCCATCCGCCCCGTATGTGATGTTGTTT
GCCTTTCGCGCCATTTACATGCTTGCGGCTTGTGCCCTGGTCACTGTGGC
TCTGGACGAGTTGATGCGCCCGGCATTCCAATGGATGTTTAGTAAGGCGT
TTGGTGGGCAGAGACCGTACCCAGAGATATCCGTTTATGATTTGGCGGAG
GCGGGGAGGAGGAGGGGTAAAAGGGTGGAGATGGGGGGAGGTTTGTCTTG
GCGGGATCGGTTGTGGGCACTGTGA
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protein sequence of NO07G02890.1

>NO07G02890.1-protein ID=NO07G02890.1-protein|Name=NO07G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MRTKMSRACSTSIPRGLPTSRRAGFQPGRLETWWRRHYGAHPQIICYRSS
ISSTRKDTGTGGVSQAPIEFQDDWKRLMEGGISINLSAILNKSDILHNEH
GRWWRWTSAEQREFIETQTVKGTPPSSPSSSSTSPFSSTTAPLTHMQKVI
ENPATNPDIVVLTRFFRLRHPFPFHALTTRLAYHLATGHVTLAETPWLES
NDLYRWSIPFFLRVLLKLGRPLYAPLFCLKWMGLRTMVLWRSFSHFIFPS
APYVMLFAFRAIYMLAACALVTVALDELMRPAFQWMFSKAFGGQRPYPEI
SVYDLAEAGRRRGKRVEMGGGLSWRDRLWAL*
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Synonyms
Publications