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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:815611..817085 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02890.1 vs.
Match: EWM27120.1 (hypothetical protein Naga_100046g21 [Nannochloropsis gaditana]) HSP 1 Score: 245.4 bits (625), Expect = 2.600e-61 Identity = 125/228 (54.82%), Postives = 146/228 (64.04%), Query Frame = 0
Query: 103 WWRWTSAEQREFIETQTV-KGTPPSSPSSSSTSPFSSTTAPLTHMQKVIENPATNPDIVVLTRFFRLRHPFPFHALTTRLAYHLATGHVTLAETPWLESNDLYRWSIPFFLRVLLKLGRPLYAPLFCLKWMGLRTMVLWRSFSHFIFPSAPYVMLFAFRAIYMLAACALVTVALDELMRPAFQWMFSKAFGGQRPYPEISVYDLAEAGRRRGKRVEMGGGLSWRDRLW 330
WWRWT EQR+F+E Q +G P S + SP P F LR+PFP H LTTRLAYH + G LAE PWLE N+LYRWSIPFF+R LK RPLYAP+FC KW+GLR M+LWRSFS F+ PS PYV LF FRAIYMLAACALVTVALDELM P +W ++ + G RP P++S Y+LAEA R+G E GG +WRDRLW
Sbjct: 176 WWRWTPTEQRDFLEKQIRDRGHSPQDASLTLASPSQPLDPPF---------------------LFHLRYPFPLHRLTTRLAYHPSAGRFALAEKPWLEENELYRWSIPFFIRFFLKAARPLYAPIFCFKWLGLRAMILWRSFSLFVLPSVPYVALFTFRAIYMLAACALVTVALDELMHPLLEWTYNIFYKGHRPLPDLSYYNLAEAWSRKG--TEGAGGYTWRDRLW 380
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02890.1 ID=NO07G02890.1|Name=NO07G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp CAATCAATCAATCAATCAATCAATCAATCAATCAAAAGTACACTTATAAT GCTCATTGGCAACCTGATTTTCATTCATATTAGTGTGGGCCAGTTGTCCC CGGGTACCTATTAAATGCGCACAAAAATGTCTCGTGCTTGCAGCACTTCA ATCCCCAGGGGGCTACCCACGTCAAGGAGAGCGGGATTCCAACCCGGACG ATTGGAAACCTGGTGGCGACGGCATTATGGAGCGCATCCACAAATCATCT GCTATAGAAGCTCTATAAGCAGCACCAGGAAAGATACTGGTACGGGCGGT GTCTCTCAAGCACCCATTGAATTCCAGGACGATTGGAAGCGTTTGATGGA AGGAGGCATCTCCATCAATCTTTCCGCAATCTTGAACAAAAGCGATATTT TGCATAACGAGCACGGACGCTGGTGGCGCTGGACGTCAGCAGAACAAAGG GAGTTCATCGAAACACAAACCGTGAAAGGGACACCTCCCTCCTCTCCTTC CTCTTCCTCTACCTCCCCCTTCTCCTCCACAACTGCCCCACTTACTCACA TGCAGAAAGTCATCGAAAATCCAGCGACCAATCCCGATATTGTCGTTCTT ACTCGATTCTTTCGACTGCGCCACCCTTTCCCCTTCCATGCATTGACTAC TCGCCTCGCCTATCACCTAGCCACGGGCCATGTGACCCTCGCCGAGACCC CCTGGCTGGAAAGCAACGACCTCTACCGCTGGTCGATCCCGTTCTTCCTT CGCGTGCTCCTCAAGCTTGGAAGGCCATTGTACGCACCTCTTTTTTGCTT GAAATGGATGGGTTTGCGAACTATGGTCCTGTGGAGGTCTTTCTCACACT TTATTTTTCCATCCGCCCCGTATGTGATGTTGTTTGCCTTTCGCGCCATT TACATGCTTGCGGCTTGTGCCCTGGTCACTGTGGCTCTGGACGAGTTGAT GCGCCCGGCATTCCAATGGATGTTTAGTAAGGCGTTTGGTGGGCAGAGAC CGTACCCAGAGATATCCGTTTATGATTTGGCGGAGGCGGGGAGGAGGAGG GGTAAAAGGGTGGAGATGGGGGGAGGTTTGTCTTGGCGGGATCGGTTGTG GGCACTGTGA back to topprotein sequence of NO07G02890.1 >NO07G02890.1-protein ID=NO07G02890.1-protein|Name=NO07G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp MRTKMSRACSTSIPRGLPTSRRAGFQPGRLETWWRRHYGAHPQIICYRSS ISSTRKDTGTGGVSQAPIEFQDDWKRLMEGGISINLSAILNKSDILHNEH GRWWRWTSAEQREFIETQTVKGTPPSSPSSSSTSPFSSTTAPLTHMQKVI ENPATNPDIVVLTRFFRLRHPFPFHALTTRLAYHLATGHVTLAETPWLES NDLYRWSIPFFLRVLLKLGRPLYAPLFCLKWMGLRTMVLWRSFSHFIFPS APYVMLFAFRAIYMLAACALVTVALDELMRPAFQWMFSKAFGGQRPYPEI SVYDLAEAGRRRGKRVEMGGGLSWRDRLWAL* back to topmRNA from alignment at chr7:815611..817085+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02890.1 ID=NO07G02890.1|Name=NO07G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp|location=Sequence derived from alignment at chr7:815611..817085+ (Nannochloropsis oceanica) CAATCAATCAATCAATCAATCAATCAATCAATCAAAAGTACACTTATAAT
GCTCATTGGCAACCTGATTTTCATTCATATTAGTGTGGGCCAGTTGTCCC
CGGGTACCTATTAAATGCGCACAAAAATGTCTCGTGCTTGCAGCACTTCA
ATCCCCAGGGGGCTACCCACGTCAAGGTCTGTCTTCCTGCTCCTCCTCTT
CTCTACGATTACTGTATTTGCCTTCCACCCCCACACCACCAAGCGCGTCT
TCATTGCCATCACTCCCACCGTGTCGAGCAGGAGAGCGGGATTCCAACCC
GGACGATTGGAAACCTGGTGGCGACGGCATTATGGAGCGGTACGTAAGTT
AGAGGGAGTAGTGCGTCCTCCTCCTCCCCGCTCACCTTTCCTATACCGTC
ATAAAGCATCCACAAATCATCTGCTATAGAAGCTCTATAAGCAGCACCAG
GAAAGATACTGGTACGGGCGGTGTCTCTCAAGCACCCATTGAATTCCAGG
ACGATTGGAAGCGTTTGATGGTAGGTAGCAATGTTAAGAGGTCAGCTTTC
CACGATTCGATCACTTAAAGCCAAATACTTAACAGGAAGGAGGCATCTCC
ATCAATCTTTCCGCAATCTTGAACAAAAGCGATATTTTGCATAACGAGCA
CGGTACCGTCTTTCTCGAAGCATTCAAGCGGACCCCCCCCCCTCCTCCTC
CTCCATCACGACTCTGCAGCGCTTCCTCAAAATGGGCCATAAAACCCCAA
CACCCGATGGCCTCATTGAAATAGAGTCAGGACGCTGGTGGCGCTGGACG
TCAGCAGAACAAAGGGAGTTCATCGAAACACAAACCGTGAAAGGGACACC
TCCCTCCTCTCCTTCCTCTTCCTCTACCTCCCCCTTCTCCTCCACAACTG
CCCCACTTACTCACATGCAGAAAGTCATCGAAAATCCAGCGACCAATCCC
GATATTGTCGTTCTTACTCGATTCTTTCGACTGCGCCACCCTTTCCCCTT
CCATGCATTGACTACTCGCCTCGCCTATCACCTAGCCACGGGCCATGTGA
CCCTCGCCGAGACCCCCTGGCTGGAAAGCAACGACCTCTACCGCTGGTCG
ATCCCGTTCTTCCTTCGCGTGCTCCTCAAGCTTGGAAGGCCATTGTACGC
ACCTCTTTTTTGCTTGAAATGGATGGGTTTGCGAACTATGGTCCTGTGGA
GGTCTTTCTCACACTTTATTTTTCCATCCGCCCCGTATGTGATGTTGTTT
GCCTTTCGCGCCATTTACATGCTTGCGGCTTGTGCCCTGGTCACTGTGGC
TCTGGACGAGTTGATGCGCCCGGCATTCCAATGGATGTTTAGTAAGGCGT
TTGGTGGGCAGAGACCGTACCCAGAGATATCCGTTTATGATTTGGCGGAG
GCGGGGAGGAGGAGGGGTAAAAGGGTGGAGATGGGGGGAGGTTTGTCTTG
GCGGGATCGGTTGTGGGCACTGTGA back to topCoding sequence (CDS) from alignment at chr7:815611..817085+ >NO07G02890.1 ID=NO07G02890.1|Name=NO07G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr7:815611..817085+ (Nannochloropsis oceanica) ATGCGCACAAAAATGTCTCGTGCTTGCAGCACTTCAATCCCCAGGGGGCT ACCCACGTCAAGGAGAGCGGGATTCCAACCCGGACGATTGGAAACCTGGT GGCGACGGCATTATGGAGCGCATCCACAAATCATCTGCTATAGAAGCTCT ATAAGCAGCACCAGGAAAGATACTGGTACGGGCGGTGTCTCTCAAGCACC CATTGAATTCCAGGACGATTGGAAGCGTTTGATGGAAGGAGGCATCTCCA TCAATCTTTCCGCAATCTTGAACAAAAGCGATATTTTGCATAACGAGCAC GGACGCTGGTGGCGCTGGACGTCAGCAGAACAAAGGGAGTTCATCGAAAC ACAAACCGTGAAAGGGACACCTCCCTCCTCTCCTTCCTCTTCCTCTACCT CCCCCTTCTCCTCCACAACTGCCCCACTTACTCACATGCAGAAAGTCATC GAAAATCCAGCGACCAATCCCGATATTGTCGTTCTTACTCGATTCTTTCG ACTGCGCCACCCTTTCCCCTTCCATGCATTGACTACTCGCCTCGCCTATC ACCTAGCCACGGGCCATGTGACCCTCGCCGAGACCCCCTGGCTGGAAAGC AACGACCTCTACCGCTGGTCGATCCCGTTCTTCCTTCGCGTGCTCCTCAA GCTTGGAAGGCCATTGTACGCACCTCTTTTTTGCTTGAAATGGATGGGTT TGCGAACTATGGTCCTGTGGAGGTCTTTCTCACACTTTATTTTTCCATCC GCCCCGTATGTGATGTTGTTTGCCTTTCGCGCCATTTACATGCTTGCGGC TTGTGCCCTGGTCACTGTGGCTCTGGACGAGTTGATGCGCCCGGCATTCC AATGGATGTTTAGTAAGGCGTTTGGTGGGCAGAGACCGTACCCAGAGATA TCCGTTTATGATTTGGCGGAGGCGGGGAGGAGGAGGGGTAAAAGGGTGGA GATGGGGGGAGGTTTGTCTTGGCGGGATCGGTTGTGGGCACTGTGA back to top
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