NO07G02890.1, NO07G02890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02890.1
Unique NameNO07G02890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1110
Alignment locationchr7:815611..817085 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:815611..817085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G02890.1 vs.
Match: EWM27120.1 (hypothetical protein Naga_100046g21 [Nannochloropsis gaditana])

HSP 1 Score: 245.4 bits (625), Expect = 2.600e-61
Identity = 125/228 (54.82%), Postives = 146/228 (64.04%), Query Frame = 0
Query:  103 WWRWTSAEQREFIETQTV-KGTPPSSPSSSSTSPFSSTTAPLTHMQKVIENPATNPDIVVLTRFFRLRHPFPFHALTTRLAYHLATGHVTLAETPWLESNDLYRWSIPFFLRVLLKLGRPLYAPLFCLKWMGLRTMVLWRSFSHFIFPSAPYVMLFAFRAIYMLAACALVTVALDELMRPAFQWMFSKAFGGQRPYPEISVYDLAEAGRRRGKRVEMGGGLSWRDRLW 330
            WWRWT  EQR+F+E Q   +G  P   S +  SP      P                       F LR+PFP H LTTRLAYH + G   LAE PWLE N+LYRWSIPFF+R  LK  RPLYAP+FC KW+GLR M+LWRSFS F+ PS PYV LF FRAIYMLAACALVTVALDELM P  +W ++  + G RP P++S Y+LAEA  R+G   E  GG +WRDRLW
Sbjct:  176 WWRWTPTEQRDFLEKQIRDRGHSPQDASLTLASPSQPLDPPF---------------------LFHLRYPFPLHRLTTRLAYHPSAGRFALAEKPWLEENELYRWSIPFFIRFFLKAARPLYAPIFCFKWLGLRAMILWRSFSLFVLPSVPYVALFTFRAIYMLAACALVTVALDELMHPLLEWTYNIFYKGHRPLPDLSYYNLAEAWSRKG--TEGAGGYTWRDRLW 380          
The following BLAST results are available for this feature:
BLAST of NO07G02890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27120.12.600e-6154.82hypothetical protein Naga_100046g21 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02890NO07G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02890.1NO07G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02890.1.cds1NO07G02890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02890.1.cds2NO07G02890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02890.1.cds3NO07G02890.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02890.1.cds4NO07G02890.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02890.1.cds5NO07G02890.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02890.1 ID=NO07G02890.1|Name=NO07G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
CAATCAATCAATCAATCAATCAATCAATCAATCAAAAGTACACTTATAAT
GCTCATTGGCAACCTGATTTTCATTCATATTAGTGTGGGCCAGTTGTCCC
CGGGTACCTATTAAATGCGCACAAAAATGTCTCGTGCTTGCAGCACTTCA
ATCCCCAGGGGGCTACCCACGTCAAGGAGAGCGGGATTCCAACCCGGACG
ATTGGAAACCTGGTGGCGACGGCATTATGGAGCGCATCCACAAATCATCT
GCTATAGAAGCTCTATAAGCAGCACCAGGAAAGATACTGGTACGGGCGGT
GTCTCTCAAGCACCCATTGAATTCCAGGACGATTGGAAGCGTTTGATGGA
AGGAGGCATCTCCATCAATCTTTCCGCAATCTTGAACAAAAGCGATATTT
TGCATAACGAGCACGGACGCTGGTGGCGCTGGACGTCAGCAGAACAAAGG
GAGTTCATCGAAACACAAACCGTGAAAGGGACACCTCCCTCCTCTCCTTC
CTCTTCCTCTACCTCCCCCTTCTCCTCCACAACTGCCCCACTTACTCACA
TGCAGAAAGTCATCGAAAATCCAGCGACCAATCCCGATATTGTCGTTCTT
ACTCGATTCTTTCGACTGCGCCACCCTTTCCCCTTCCATGCATTGACTAC
TCGCCTCGCCTATCACCTAGCCACGGGCCATGTGACCCTCGCCGAGACCC
CCTGGCTGGAAAGCAACGACCTCTACCGCTGGTCGATCCCGTTCTTCCTT
CGCGTGCTCCTCAAGCTTGGAAGGCCATTGTACGCACCTCTTTTTTGCTT
GAAATGGATGGGTTTGCGAACTATGGTCCTGTGGAGGTCTTTCTCACACT
TTATTTTTCCATCCGCCCCGTATGTGATGTTGTTTGCCTTTCGCGCCATT
TACATGCTTGCGGCTTGTGCCCTGGTCACTGTGGCTCTGGACGAGTTGAT
GCGCCCGGCATTCCAATGGATGTTTAGTAAGGCGTTTGGTGGGCAGAGAC
CGTACCCAGAGATATCCGTTTATGATTTGGCGGAGGCGGGGAGGAGGAGG
GGTAAAAGGGTGGAGATGGGGGGAGGTTTGTCTTGGCGGGATCGGTTGTG
GGCACTGTGA
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protein sequence of NO07G02890.1

>NO07G02890.1-protein ID=NO07G02890.1-protein|Name=NO07G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MRTKMSRACSTSIPRGLPTSRRAGFQPGRLETWWRRHYGAHPQIICYRSS
ISSTRKDTGTGGVSQAPIEFQDDWKRLMEGGISINLSAILNKSDILHNEH
GRWWRWTSAEQREFIETQTVKGTPPSSPSSSSTSPFSSTTAPLTHMQKVI
ENPATNPDIVVLTRFFRLRHPFPFHALTTRLAYHLATGHVTLAETPWLES
NDLYRWSIPFFLRVLLKLGRPLYAPLFCLKWMGLRTMVLWRSFSHFIFPS
APYVMLFAFRAIYMLAACALVTVALDELMRPAFQWMFSKAFGGQRPYPEI
SVYDLAEAGRRRGKRVEMGGGLSWRDRLWAL*
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mRNA from alignment at chr7:815611..817085+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02890.1 ID=NO07G02890.1|Name=NO07G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp|location=Sequence derived from alignment at chr7:815611..817085+ (Nannochloropsis oceanica)
CAATCAATCAATCAATCAATCAATCAATCAATCAAAAGTACACTTATAAT GCTCATTGGCAACCTGATTTTCATTCATATTAGTGTGGGCCAGTTGTCCC CGGGTACCTATTAAATGCGCACAAAAATGTCTCGTGCTTGCAGCACTTCA ATCCCCAGGGGGCTACCCACGTCAAGGTCTGTCTTCCTGCTCCTCCTCTT CTCTACGATTACTGTATTTGCCTTCCACCCCCACACCACCAAGCGCGTCT TCATTGCCATCACTCCCACCGTGTCGAGCAGGAGAGCGGGATTCCAACCC GGACGATTGGAAACCTGGTGGCGACGGCATTATGGAGCGGTACGTAAGTT AGAGGGAGTAGTGCGTCCTCCTCCTCCCCGCTCACCTTTCCTATACCGTC ATAAAGCATCCACAAATCATCTGCTATAGAAGCTCTATAAGCAGCACCAG GAAAGATACTGGTACGGGCGGTGTCTCTCAAGCACCCATTGAATTCCAGG ACGATTGGAAGCGTTTGATGGTAGGTAGCAATGTTAAGAGGTCAGCTTTC CACGATTCGATCACTTAAAGCCAAATACTTAACAGGAAGGAGGCATCTCC ATCAATCTTTCCGCAATCTTGAACAAAAGCGATATTTTGCATAACGAGCA CGGTACCGTCTTTCTCGAAGCATTCAAGCGGACCCCCCCCCCTCCTCCTC CTCCATCACGACTCTGCAGCGCTTCCTCAAAATGGGCCATAAAACCCCAA CACCCGATGGCCTCATTGAAATAGAGTCAGGACGCTGGTGGCGCTGGACG TCAGCAGAACAAAGGGAGTTCATCGAAACACAAACCGTGAAAGGGACACC TCCCTCCTCTCCTTCCTCTTCCTCTACCTCCCCCTTCTCCTCCACAACTG CCCCACTTACTCACATGCAGAAAGTCATCGAAAATCCAGCGACCAATCCC GATATTGTCGTTCTTACTCGATTCTTTCGACTGCGCCACCCTTTCCCCTT CCATGCATTGACTACTCGCCTCGCCTATCACCTAGCCACGGGCCATGTGA CCCTCGCCGAGACCCCCTGGCTGGAAAGCAACGACCTCTACCGCTGGTCG ATCCCGTTCTTCCTTCGCGTGCTCCTCAAGCTTGGAAGGCCATTGTACGC ACCTCTTTTTTGCTTGAAATGGATGGGTTTGCGAACTATGGTCCTGTGGA GGTCTTTCTCACACTTTATTTTTCCATCCGCCCCGTATGTGATGTTGTTT GCCTTTCGCGCCATTTACATGCTTGCGGCTTGTGCCCTGGTCACTGTGGC TCTGGACGAGTTGATGCGCCCGGCATTCCAATGGATGTTTAGTAAGGCGT TTGGTGGGCAGAGACCGTACCCAGAGATATCCGTTTATGATTTGGCGGAG GCGGGGAGGAGGAGGGGTAAAAGGGTGGAGATGGGGGGAGGTTTGTCTTG GCGGGATCGGTTGTGGGCACTGTGA
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Coding sequence (CDS) from alignment at chr7:815611..817085+

>NO07G02890.1 ID=NO07G02890.1|Name=NO07G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr7:815611..817085+ (Nannochloropsis oceanica)
ATGCGCACAAAAATGTCTCGTGCTTGCAGCACTTCAATCCCCAGGGGGCT
ACCCACGTCAAGGAGAGCGGGATTCCAACCCGGACGATTGGAAACCTGGT
GGCGACGGCATTATGGAGCGCATCCACAAATCATCTGCTATAGAAGCTCT
ATAAGCAGCACCAGGAAAGATACTGGTACGGGCGGTGTCTCTCAAGCACC
CATTGAATTCCAGGACGATTGGAAGCGTTTGATGGAAGGAGGCATCTCCA
TCAATCTTTCCGCAATCTTGAACAAAAGCGATATTTTGCATAACGAGCAC
GGACGCTGGTGGCGCTGGACGTCAGCAGAACAAAGGGAGTTCATCGAAAC
ACAAACCGTGAAAGGGACACCTCCCTCCTCTCCTTCCTCTTCCTCTACCT
CCCCCTTCTCCTCCACAACTGCCCCACTTACTCACATGCAGAAAGTCATC
GAAAATCCAGCGACCAATCCCGATATTGTCGTTCTTACTCGATTCTTTCG
ACTGCGCCACCCTTTCCCCTTCCATGCATTGACTACTCGCCTCGCCTATC
ACCTAGCCACGGGCCATGTGACCCTCGCCGAGACCCCCTGGCTGGAAAGC
AACGACCTCTACCGCTGGTCGATCCCGTTCTTCCTTCGCGTGCTCCTCAA
GCTTGGAAGGCCATTGTACGCACCTCTTTTTTGCTTGAAATGGATGGGTT
TGCGAACTATGGTCCTGTGGAGGTCTTTCTCACACTTTATTTTTCCATCC
GCCCCGTATGTGATGTTGTTTGCCTTTCGCGCCATTTACATGCTTGCGGC
TTGTGCCCTGGTCACTGTGGCTCTGGACGAGTTGATGCGCCCGGCATTCC
AATGGATGTTTAGTAAGGCGTTTGGTGGGCAGAGACCGTACCCAGAGATA
TCCGTTTATGATTTGGCGGAGGCGGGGAGGAGGAGGGGTAAAAGGGTGGA
GATGGGGGGAGGTTTGTCTTGGCGGGATCGGTTGTGGGCACTGTGA
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Synonyms
Publications