NO07G02730, NO07G02730 (gene) Nannochloropsis oceanica

Overview
NameNO07G02730
Unique NameNO07G02730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1761
Alignment locationchr7:783863..785623 +

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Properties
Property NameValue
DescriptionFrataxin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:783863..785623 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008199ferric iron binding
GO:0008199ferric iron binding
GO:0004322ferroxidase activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
GO:0055114oxidation-reduction process
GO:0016226iron-sulfur cluster assembly
GO:0016043cellular component organization
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR002908Frataxin/CyaY
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Homology
BLAST of NO07G02730 vs. NCBI_GenBank
Match: XP_012193977.1 (hypothetical protein SPRG_00493 [Saprolegnia parasitica CBS 223.65] >KDO35690.1 hypothetical protein SPRG_00493 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 116.7 bits (291), Expect = 6.300e-23
Identity = 60/142 (42.25%), Postives = 90/142 (63.38%), Query Frame = 0
Query:    1 MPRTVSLLPRNATSYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQ-LFTLLAEEVQKVAGV 142
            +P+    +  +  ++ +S   +FS+ +    +     TE +F  ++D  L+++  ++D +E  + D +  LSQGVL I +GE GTWVLNKQ PNRQIWWSSP+SGP RFEYD  LK+W  TR ++Q L  LL EEV+ + G+
Sbjct:   23 LPQLKPAMKPSTRAFIASRTMAFSTEAAVPSM-----TESEFMKLSDVVLNDILEMMDGIEAILPDADITLSQGVLTINLGEDGTWVLNKQGPNRQIWWSSPVSGPKRFEYDSRLKKWFNTREKQQELVELLTEEVEDITGI 159          
BLAST of NO07G02730 vs. NCBI_GenBank
Match: GAX92170.1 (Hypothetical protein PINS_000070 [Pythium insidiosum])

HSP 1 Score: 115.9 bits (289), Expect = 1.100e-22
Identity = 59/140 (42.14%), Postives = 86/140 (61.43%), Query Frame = 0
Query:    9 PRNATSYSSSLCPS---FSSSSGTSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQA 146
            P    + S ++ PS   FS+SS  +        E  F  +A+ TL++V   +D +E+ +DD +  LSQGVL I +G HGTWVLN+Q PNRQIWWSSP+SGP R+E+D     W++TR + +LF  L +E+    G+ I +
Sbjct:   41 PATVRTTSETVRPSMRLFSTSSDNAA--AAVDDENRFLEMAEETLEQVVEWIDGIEEMLDDSDVTLSQGVLKIDLGAHGTWVLNRQIPNRQIWWSSPISGPRRYEFDAETGAWLSTREKAELFECLQQEICDATGISIHS 178          
BLAST of NO07G02730 vs. NCBI_GenBank
Match: XP_024576989.1 (iron donor protein [Plasmopara halstedii] >CEG40620.1 iron donor protein [Plasmopara halstedii])

HSP 1 Score: 115.2 bits (287), Expect = 1.800e-22
Identity = 50/106 (47.17%), Postives = 75/106 (70.75%), Query Frame = 0
Query:   38 TERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDI 144
            TE +F  +AD TL ++Q+ +D +E+ +++ +   S GVL I +GE+GTWV+N+Q PNRQIWWSSP+SGP R+EYD   + WV TR + +L  LL  E+ +  G++I
Sbjct:    2 TEHEFMELADKTLFDIQSWLDGIEEMLEECDVMFSVGVLKIDLGEYGTWVINRQVPNRQIWWSSPISGPRRYEYDAERRAWVNTRDKGELKELLHTEILEATGIEI 107          
BLAST of NO07G02730 vs. NCBI_GenBank
Match: POM63756.1 (Frataxin, mitochondrial precursor [Phytophthora palmivora var. palmivora])

HSP 1 Score: 113.6 bits (283), Expect = 5.300e-22
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = 0
Query:   38 TERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDI 144
            TE +F  +AD TL ++Q+ +D +E+ +++ +   S  VL I +GEHGTWV+N+Q PNRQIWWSSP+SGP R+E+D     WV TR R +L  LL  E+ +  G++I
Sbjct:   60 TEHEFMELADETLHDIQSWLDGIEEMLEESDIMFSVRVLKIDLGEHGTWVINRQVPNRQIWWSSPISGPRRYEFDGESGHWVNTRDRGELTELLRTEILEATGIEI 165          
BLAST of NO07G02730 vs. NCBI_GenBank
Match: POM76041.1 (Frataxin, mitochondrial precursor [Phytophthora palmivora var. palmivora])

HSP 1 Score: 113.6 bits (283), Expect = 5.300e-22
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = 0
Query:   38 TERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDI 144
            TE +F  +AD TL ++Q+ +D +E+ +++ +   S  VL I +GEHGTWV+N+Q PNRQIWWSSP+SGP R+E+D     WV TR R +L  LL  E+ +  G++I
Sbjct:   60 TEHEFMELADETLHDIQSWLDGIEEMLEESDIMFSVRVLKIDLGEHGTWVINRQVPNRQIWWSSPISGPRRYEFDGESGHWVNTRDRGELTELLRTEILEATGIEI 165          
BLAST of NO07G02730 vs. NCBI_GenBank
Match: OWZ11662.1 (Iron donor protein CyaY [Phytophthora megakarya])

HSP 1 Score: 111.3 bits (277), Expect = 2.600e-21
Identity = 49/106 (46.23%), Postives = 72/106 (67.92%), Query Frame = 0
Query:   38 TERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDI 144
            TE +F  +AD TL ++Q+ +D +E+ +++ +   S  VL I +G+HGTWV+N+Q PNRQIWWSSP+SGP R+E D     WV TR R +L  LL  E+ +  G++I
Sbjct:   58 TENEFMELADETLHDIQSWLDGIEEMLEESDIMFSVRVLKIDLGDHGTWVINRQVPNRQIWWSSPISGPRRYELDAESGHWVNTRDRGELTELLRTEILEATGIEI 163          
BLAST of NO07G02730 vs. NCBI_GenBank
Match: CCI49047.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 109.4 bits (272), Expect = 1.000e-20
Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 0
Query:   39 ERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQ 145
            E +F  +AD+ L+E+   +  +ED +DD +  LSQGVL I + + G+WV+N+Q PN+Q+WWSSPLSGP R+EY+P  K W  TR + +L  LL  E+++  G  ++
Sbjct:   62 EHEFVHLADSALEEIFDSMGDVEDAIDDADITLSQGVLKIDLADAGSWVINRQVPNKQLWWSSPLSGPRRYEYNPKSKCWENTRDKTELKDLLKREIEEAIGASVR 167          
BLAST of NO07G02730 vs. NCBI_GenBank
Match: XP_008876602.1 (iron donor protein CyaY [Aphanomyces invadans] >ETV94657.1 iron donor protein CyaY [Aphanomyces invadans])

HSP 1 Score: 109.0 bits (271), Expect = 1.300e-20
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 0
Query:    8 LPRNATSYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRK-QLFTLLAEEVQKVAGV 142
            LP  +  +  +L  S   SS          ++ DF   ++ATL+ +  ++D +E  + D +  LSQGVL I +GE GTWVLNKQ PN+QIWWSSP+SGP RFE+D  LK+W  TR +  +L  LL  E+++++G+
Sbjct:   33 LPIRSRGHVPTLIQSRCFSSDPPAEGMSNLSDSDFARHSEATLNSILEMMDGIEAILPDADITLSQGVLTINLGEDGTWVLNKQGPNKQIWWSSPISGPKRFEFDSRLKKWFNTRDKDVELIELLTNEIEELSGI 167          
BLAST of NO07G02730 vs. NCBI_GenBank
Match: CCA26662.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 107.8 bits (268), Expect = 2.900e-20
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 0
Query:   39 ERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQ 145
            E  F  +AD+ L+E+   +  +ED +DD +  LSQGVL I +   G+WV+N+Q PN+Q+WWSSPLSGP R+EY+P  K W  TR + +L  LL  E+++  G  ++
Sbjct:    3 ENQFVRLADSALEEIFDSMGDVEDAIDDADITLSQGVLKIDLAHAGSWVINRQVPNKQLWWSSPLSGPRRYEYNPKSKCWENTRDKTELKNLLKREIEEAIGATVR 108          
BLAST of NO07G02730 vs. NCBI_GenBank
Match: CBN74370.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 104.4 bits (259), Expect = 3.200e-19
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 0
Query:   38 TERDFHVVADAT--LDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATR-GRKQLFTLLAEEVQKVAGVDI 144
            +E++FH VAD                      + N+SQGVLNI +G+ GTWVLNKQ+PNRQIWWSSP+SGPMRFEY    K+W+ TR G  +L  +LA E+ +  GV +
Sbjct:  153 SEQEFHSVADEAXXXXXXXXXXXXXXXXXXXXDCNMSQGVLNIAVGDRGTWVLNKQSPNRQIWWSSPISGPMRFEYHEEAKRWLNTRDGETELRVILATEMSEKCGVSV 261          
The following BLAST results are available for this feature:
BLAST of NO07G02730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_012193977.16.300e-2342.25hypothetical protein SPRG_00493 [Saprolegnia paras... [more]
GAX92170.11.100e-2242.14Hypothetical protein PINS_000070 [Pythium insidios... [more]
XP_024576989.11.800e-2247.17iron donor protein [Plasmopara halstedii] >CEG4062... [more]
POM63756.15.300e-2247.17Frataxin, mitochondrial precursor [Phytophthora pa... [more]
POM76041.15.300e-2247.17Frataxin, mitochondrial precursor [Phytophthora pa... [more]
OWZ11662.12.600e-2146.23Iron donor protein CyaY [Phytophthora megakarya][more]
CCI49047.11.000e-2044.34unnamed protein product [Albugo candida][more]
XP_008876602.11.300e-2042.22iron donor protein CyaY [Aphanomyces invadans] >ET... [more]
CCA26662.12.900e-2044.34conserved hypothetical protein [Albugo laibachii N... [more]
CBN74370.13.200e-1947.71conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000579NSK000579Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02730.1NO07G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G02730.2NO07G02730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580905gene_2605Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g37gene3457Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02730.1NO07G02730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G02730.2NO07G02730.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02730 ID=NO07G02730|Name=NO07G02730|organism=Nannochloropsis oceanica|type=gene|length=1761bp
AAAAAAAGATGATGACTGTGGGGTTTTAGGGCAGTGTGACAAGGAGCTTA
AATTAAACTTTCCATGGTCCACACTTGAACCCACGCGGTTTCCCATTGGC
GCCTAAAACCAACGCCTTAACCTCTCGGCCAAGTCATCACAGAGCAGTAG
TAGTACTCGCTCAACTAGAGTCTCACGAGAAGTTTCCATCGAAGAGTAGA
ACCCTTTATAAATTTCCAAGGGGGTCCAGGGAAGTGTAGAGTATTTTGGG
AAAGTACTGAAAAGGAGCCCAACGTACACAAACGTACACAACCTAGTCCC
AAAGTGGCGGAATCGTCAACCCGAGTGACAGGTCCACATTGGAGACGTCC
ATGAGTTGTTATTAAAATTACTACTCAAGGGATGAGAGCTGATATTGACG
CACAGTGGCTCAACCAGTCTCTTGAGAGTGCACCCTTTCCCTCGTCGAGG
GCTTTTATGGCGCTTGCAGAACCAGGCCGATACTGTACCGTGCTGAGTAT
CACAACAAAATATGCAGAGCACCCAGGTTTTATGCACCTGCATCATGTGG
GGCTTGTGGCCCTTGGTCGACCTCCCCTGGCATTACCTTCACTTCCCCCA
GACTATGTGCGCCTGTCTCGCGATGCATGCCATGCAGCTGACCGCTCTCA
TAACACACCACCTTAGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGC
AAGCCAGAGCCAACAAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCT
ATCCGCCTTGTCCAACACATCAGCCCCCGCCGACACAACCAGCAGCCCAT
TCTTAGAACTTTGATGGCATCACAAAAAATATCGCCATCAGCGGTGACAA
CAGCAAAGCATGCCTCGgtaggttctgcgagaggtcatgaggggtcaatc
tgtgaccagcatcagcattctcttggcacctcatttccatccagGACGGT
GTCTCTACTTCCAAGGAACGCAACTTCCTACTCTTCTTCATTGTGCCCTT
CCTTCTCGTCGTCATCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAACG
GAGCGGGATTTCCACGTGGTGGCGGACGCGACGCTGGACGAGGTGCAGGC
ATTGGTGGATAGTTTGGAGGACACAGTGGACGATTATGAGGCGAACTTAT
CGgtgcgtgtttggttggagtaagtccagaaaggcagtctagatacatag
cttctataacttggggactggcatattacgttggtgaacgaggcggtagt
gtgtgaaaaatgcgtgcgtggcttgcccgtgggaatataagcctgtgagc
tgttgtacaggtctgcgcatacagatatgagcacatccaagattgcggta
tcggctcatgcgtgattcgttcgccatctcttatctgcatattaacataa
acatacgtctctccaacgtgtctcgttttcagtctatctctttcttcctc
tccatcttcacagCAAGGCGTTCTCAACATCCTAATGGGTGAGCACGGGA
CCTGGGTACTGAATAAACAAACGCCCAACCGACAAATCTGGTGGTCTTCT
CCCTTAAGTGGTCCTATGCGCTTTGAGTATGATCCAAGCTTAAAACAATG
GGTGGCAACGCGAGGCAGGAAACAGTTGTTCACGTTGCTGGCGGAGGAGG
TACAGAAAGTGGCGGGTGTTGACATCCAGGCACGGCGAACCACCAAGCAT
TAAACATAGGATTAGTACGAGGGTTAGAAAATTGTATCAAAGAATCAAAT
GCAAGCGTCAA
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protein sequence of NO07G02730.1

>NO07G02730.1-protein ID=NO07G02730.1-protein|Name=NO07G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MPRTVSLLPRNATSYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATL
DEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWS
SPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQARRTTK
H*
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protein sequence of NO07G02730.2

>NO07G02730.2-protein ID=NO07G02730.2-protein|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MRAPCNMMAAIRLVQHISPRRHNQQPILRTLMASQKISPSAVTTAKHASV
GSARGHEGSICDQHQHSLGTSFPSRTVSLLPRNATSYSSSLCPSFSSSSG
TSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNI
LMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLF
TLLAEEVQKVAGVDIQARRTTKH*
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Synonyms
Publications