NO07G02730.2, NO07G02730.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02730.2
Unique NameNO07G02730.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1450
Alignment locationchr7:783863..785623 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:783863..785623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G02730.2 vs.
Match: EWM27088.1 (Frataxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 186.8 bits (473), Expect = 7.300e-44
Identity = 108/199 (54.27%), Postives = 135/199 (67.84%), Query Frame = 0
Query:   27 ILRTLMASQKISPS-AVTTAKHASVGSARGHEGSICDQHQHSLGTSFPSRTVSLLPRN------ATSYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQAR 219
            + R+L  S K   S +VT    A  G+AR  + ++   ++  L  S       + PR+      AT +S  +  S  +++   +  GGF TERDFHVVAD TLDEVQA VD+LED V+DYEANLSQGVLNI MG HGTWVLNKQTPNRQIWWSSPLSGP+RFEYD + K WV TR R++LF LL EEV++VAG+DI+ R
Sbjct:    9 LTRSLARSCKSMTSISVTQVSQAVAGAARPSK-ALWGAYRKPLSES----QQQVCPRSPFYCAQATLFSHFVSSSSRTNAEEVQNQGGFPTERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRTR 202          
The following BLAST results are available for this feature:
BLAST of NO07G02730.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27088.17.300e-4454.27Frataxin-like protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02730NO07G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02730.2NO07G02730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02730.2.cds1NO07G02730.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02730.2.cds2NO07G02730.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02730.2 ID=NO07G02730.2|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp
AAAAAAAGATGATGACTGTGGGGTTTTAGGGCAGTGTGACAAGGAGCTTA
AATTAAACTTTCCATGGTCCACACTTGAACCCACGCGGTTTCCCATTGGC
GCCTAAAACCAACGCCTTAACCTCTCGGCCAAGTCATCACAGAGCAGTAG
TAGTACTCGCTCAACTAGAGTCTCACGAGAAGTTTCCATCGAAGAGTAGA
ACCCTTTATAAATTTCCAAGGGGGTCCAGGGAAGTGTAGAGTATTTTGGG
AAAGTACTGAAAAGGAGCCCAACGTACACAAACGTACACAACCTAGTCCC
AAAGTGGCGGAATCGTCAACCCGAGTGACAGGTCCACATTGGAGACGTCC
ATGAGTTGTTATTAAAATTACTACTCAAGGGATGAGAGCTGATATTGACG
CACAGTGGCTCAACCAGTCTCTTGAGAGTGCACCCTTTCCCTCGTCGAGG
GCTTTTATGGCGCTTGCAGAACCAGGCCGATACTGTACCGTGCTGAGTAT
CACAACAAAATATGCAGAGCACCCAGGTTTTATGCACCTGCATCATGTGG
GGCTTGTGGCCCTTGGTCGACCTCCCCTGGCATTACCTTCACTTCCCCCA
GACTATGTGCGCCTGTCTCGCGATGCATGCCATGCAGCTGACCGCTCTCA
TAACACACCACCTTAGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGC
AAGCCAGAGCCAACAAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCT
ATCCGCCTTGTCCAACACATCAGCCCCCGCCGACACAACCAGCAGCCCAT
TCTTAGAACTTTGATGGCATCACAAAAAATATCGCCATCAGCGGTGACAA
CAGCAAAGCATGCCTCGGTAGGTTCTGCGAGAGGTCATGAGGGGTCAATC
TGTGACCAGCATCAGCATTCTCTTGGCACCTCATTTCCATCCAGGACGGT
GTCTCTACTTCCAAGGAACGCAACTTCCTACTCTTCTTCATTGTGCCCTT
CCTTCTCGTCGTCATCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAACG
GAGCGGGATTTCCACGTGGTGGCGGACGCGACGCTGGACGAGGTGCAGGC
ATTGGTGGATAGTTTGGAGGACACAGTGGACGATTATGAGGCGAACTTAT
CGCAAGGCGTTCTCAACATCCTAATGGGTGAGCACGGGACCTGGGTACTG
AATAAACAAACGCCCAACCGACAAATCTGGTGGTCTTCTCCCTTAAGTGG
TCCTATGCGCTTTGAGTATGATCCAAGCTTAAAACAATGGGTGGCAACGC
GAGGCAGGAAACAGTTGTTCACGTTGCTGGCGGAGGAGGTACAGAAAGTG
GCGGGTGTTGACATCCAGGCACGGCGAACCACCAAGCATTAAACATAGGA
TTAGTACGAGGGTTAGAAAATTGTATCAAAGAATCAAATGCAAGCGTCAA
back to top

protein sequence of NO07G02730.2

>NO07G02730.2-protein ID=NO07G02730.2-protein|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MRAPCNMMAAIRLVQHISPRRHNQQPILRTLMASQKISPSAVTTAKHASV
GSARGHEGSICDQHQHSLGTSFPSRTVSLLPRNATSYSSSLCPSFSSSSG
TSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNI
LMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLF
TLLAEEVQKVAGVDIQARRTTKH*
back to top

mRNA from alignment at chr7:783863..785623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02730.2 ID=NO07G02730.2|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at chr7:783863..785623+ (Nannochloropsis oceanica)
AAAAAAAGATGATGACTGTGGGGTTTTAGGGCAGTGTGACAAGGAGCTTA AATTAAACTTTCCATGGTCCACACTTGAACCCACGCGGTTTCCCATTGGC GCCTAAAACCAACGCCTTAACCTCTCGGCCAAGTCATCACAGAGCAGTAG TAGTACTCGCTCAACTAGAGTCTCACGAGAAGTTTCCATCGAAGAGTAGA ACCCTTTATAAATTTCCAAGGGGGTCCAGGGAAGTGTAGAGTATTTTGGG AAAGTACTGAAAAGGAGCCCAACGTACACAAACGTACACAACCTAGTCCC AAAGTGGCGGAATCGTCAACCCGAGTGACAGGTCCACATTGGAGACGTCC ATGAGTTGTTATTAAAATTACTACTCAAGGGATGAGAGCTGATATTGACG CACAGTGGCTCAACCAGTCTCTTGAGAGTGCACCCTTTCCCTCGTCGAGG GCTTTTATGGCGCTTGCAGAACCAGGCCGATACTGTACCGTGCTGAGTAT CACAACAAAATATGCAGAGCACCCAGGTTTTATGCACCTGCATCATGTGG GGCTTGTGGCCCTTGGTCGACCTCCCCTGGCATTACCTTCACTTCCCCCA GACTATGTGCGCCTGTCTCGCGATGCATGCCATGCAGCTGACCGCTCTCA TAACACACCACCTTAGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGC AAGCCAGAGCCAACAAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCT ATCCGCCTTGTCCAACACATCAGCCCCCGCCGACACAACCAGCAGCCCAT TCTTAGAACTTTGATGGCATCACAAAAAATATCGCCATCAGCGGTGACAA CAGCAAAGCATGCCTCGGTAGGTTCTGCGAGAGGTCATGAGGGGTCAATC TGTGACCAGCATCAGCATTCTCTTGGCACCTCATTTCCATCCAGGACGGT GTCTCTACTTCCAAGGAACGCAACTTCCTACTCTTCTTCATTGTGCCCTT CCTTCTCGTCGTCATCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAACG GAGCGGGATTTCCACGTGGTGGCGGACGCGACGCTGGACGAGGTGCAGGC ATTGGTGGATAGTTTGGAGGACACAGTGGACGATTATGAGGCGAACTTAT CGGTGCGTGTTTGGTTGGAGTAAGTCCAGAAAGGCAGTCTAGATACATAG CTTCTATAACTTGGGGACTGGCATATTACGTTGGTGAACGAGGCGGTAGT GTGTGAAAAATGCGTGCGTGGCTTGCCCGTGGGAATATAAGCCTGTGAGC TGTTGTACAGGTCTGCGCATACAGATATGAGCACATCCAAGATTGCGGTA TCGGCTCATGCGTGATTCGTTCGCCATCTCTTATCTGCATATTAACATAA ACATACGTCTCTCCAACGTGTCTCGTTTTCAGTCTATCTCTTTCTTCCTC TCCATCTTCACAGCAAGGCGTTCTCAACATCCTAATGGGTGAGCACGGGA CCTGGGTACTGAATAAACAAACGCCCAACCGACAAATCTGGTGGTCTTCT CCCTTAAGTGGTCCTATGCGCTTTGAGTATGATCCAAGCTTAAAACAATG GGTGGCAACGCGAGGCAGGAAACAGTTGTTCACGTTGCTGGCGGAGGAGG TACAGAAAGTGGCGGGTGTTGACATCCAGGCACGGCGAACCACCAAGCAT TAAACATAGGATTAGTACGAGGGTTAGAAAATTGTATCAAAGAATCAAAT GCAAGCGTCAA
back to top

Coding sequence (CDS) from alignment at chr7:783863..785623+

>NO07G02730.2 ID=NO07G02730.2|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr7:783863..785623+ (Nannochloropsis oceanica)
ATGCGCGCTCCTTGCAATATGATGGCGGCTATCCGCCTTGTCCAACACAT
CAGCCCCCGCCGACACAACCAGCAGCCCATTCTTAGAACTTTGATGGCAT
CACAAAAAATATCGCCATCAGCGGTGACAACAGCAAAGCATGCCTCGGTA
GGTTCTGCGAGAGGTCATGAGGGGTCAATCTGTGACCAGCATCAGCATTC
TCTTGGCACCTCATTTCCATCCAGGACGGTGTCTCTACTTCCAAGGAACG
CAACTTCCTACTCTTCTTCATTGTGCCCTTCCTTCTCGTCGTCATCCGGT
ACCAGCGAGGTTGACGGAGGCTTTCAAACGGAGCGGGATTTCCACGTGGT
GGCGGACGCGACGCTGGACGAGGTGCAGGCATTGGTGGATAGTTTGGAGG
ACACAGTGGACGATTATGAGGCGAACTTATCGCAAGGCGTTCTCAACATC
CTAATGGGTGAGCACGGGACCTGGGTACTGAATAAACAAACGCCCAACCG
ACAAATCTGGTGGTCTTCTCCCTTAAGTGGTCCTATGCGCTTTGAGTATG
ATCCAAGCTTAAAACAATGGGTGGCAACGCGAGGCAGGAAACAGTTGTTC
ACGTTGCTGGCGGAGGAGGTACAGAAAGTGGCGGGTGTTGACATCCAGGC
ACGGCGAACCACCAAGCATTAA
back to top
Synonyms
Publications