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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:783863..785623 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02730.2 vs.
Match: EWM27088.1 (Frataxin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 186.8 bits (473), Expect = 7.300e-44 Identity = 108/199 (54.27%), Postives = 135/199 (67.84%), Query Frame = 0
Query: 27 ILRTLMASQKISPS-AVTTAKHASVGSARGHEGSICDQHQHSLGTSFPSRTVSLLPRN------ATSYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQAR 219
+ R+L S K S +VT A G+AR + ++ ++ L S + PR+ AT +S + S +++ + GGF TERDFHVVAD TLDEVQA VD+LED V+DYEANLSQGVLNI MG HGTWVLNKQTPNRQIWWSSPLSGP+RFEYD + K WV TR R++LF LL EEV++VAG+DI+ R
Sbjct: 9 LTRSLARSCKSMTSISVTQVSQAVAGAARPSK-ALWGAYRKPLSES----QQQVCPRSPFYCAQATLFSHFVSSSSRTNAEEVQNQGGFPTERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRTR 202
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02730.2 ID=NO07G02730.2|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp AAAAAAAGATGATGACTGTGGGGTTTTAGGGCAGTGTGACAAGGAGCTTA AATTAAACTTTCCATGGTCCACACTTGAACCCACGCGGTTTCCCATTGGC GCCTAAAACCAACGCCTTAACCTCTCGGCCAAGTCATCACAGAGCAGTAG TAGTACTCGCTCAACTAGAGTCTCACGAGAAGTTTCCATCGAAGAGTAGA ACCCTTTATAAATTTCCAAGGGGGTCCAGGGAAGTGTAGAGTATTTTGGG AAAGTACTGAAAAGGAGCCCAACGTACACAAACGTACACAACCTAGTCCC AAAGTGGCGGAATCGTCAACCCGAGTGACAGGTCCACATTGGAGACGTCC ATGAGTTGTTATTAAAATTACTACTCAAGGGATGAGAGCTGATATTGACG CACAGTGGCTCAACCAGTCTCTTGAGAGTGCACCCTTTCCCTCGTCGAGG GCTTTTATGGCGCTTGCAGAACCAGGCCGATACTGTACCGTGCTGAGTAT CACAACAAAATATGCAGAGCACCCAGGTTTTATGCACCTGCATCATGTGG GGCTTGTGGCCCTTGGTCGACCTCCCCTGGCATTACCTTCACTTCCCCCA GACTATGTGCGCCTGTCTCGCGATGCATGCCATGCAGCTGACCGCTCTCA TAACACACCACCTTAGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGC AAGCCAGAGCCAACAAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCT ATCCGCCTTGTCCAACACATCAGCCCCCGCCGACACAACCAGCAGCCCAT TCTTAGAACTTTGATGGCATCACAAAAAATATCGCCATCAGCGGTGACAA CAGCAAAGCATGCCTCGGTAGGTTCTGCGAGAGGTCATGAGGGGTCAATC TGTGACCAGCATCAGCATTCTCTTGGCACCTCATTTCCATCCAGGACGGT GTCTCTACTTCCAAGGAACGCAACTTCCTACTCTTCTTCATTGTGCCCTT CCTTCTCGTCGTCATCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAACG GAGCGGGATTTCCACGTGGTGGCGGACGCGACGCTGGACGAGGTGCAGGC ATTGGTGGATAGTTTGGAGGACACAGTGGACGATTATGAGGCGAACTTAT CGCAAGGCGTTCTCAACATCCTAATGGGTGAGCACGGGACCTGGGTACTG AATAAACAAACGCCCAACCGACAAATCTGGTGGTCTTCTCCCTTAAGTGG TCCTATGCGCTTTGAGTATGATCCAAGCTTAAAACAATGGGTGGCAACGC GAGGCAGGAAACAGTTGTTCACGTTGCTGGCGGAGGAGGTACAGAAAGTG GCGGGTGTTGACATCCAGGCACGGCGAACCACCAAGCATTAAACATAGGA TTAGTACGAGGGTTAGAAAATTGTATCAAAGAATCAAATGCAAGCGTCAA back to topprotein sequence of NO07G02730.2 >NO07G02730.2-protein ID=NO07G02730.2-protein|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp MRAPCNMMAAIRLVQHISPRRHNQQPILRTLMASQKISPSAVTTAKHASV GSARGHEGSICDQHQHSLGTSFPSRTVSLLPRNATSYSSSLCPSFSSSSG TSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNI LMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLF TLLAEEVQKVAGVDIQARRTTKH* back to topmRNA from alignment at chr7:783863..785623+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02730.2 ID=NO07G02730.2|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at chr7:783863..785623+ (Nannochloropsis oceanica) AAAAAAAGATGATGACTGTGGGGTTTTAGGGCAGTGTGACAAGGAGCTTA
AATTAAACTTTCCATGGTCCACACTTGAACCCACGCGGTTTCCCATTGGC
GCCTAAAACCAACGCCTTAACCTCTCGGCCAAGTCATCACAGAGCAGTAG
TAGTACTCGCTCAACTAGAGTCTCACGAGAAGTTTCCATCGAAGAGTAGA
ACCCTTTATAAATTTCCAAGGGGGTCCAGGGAAGTGTAGAGTATTTTGGG
AAAGTACTGAAAAGGAGCCCAACGTACACAAACGTACACAACCTAGTCCC
AAAGTGGCGGAATCGTCAACCCGAGTGACAGGTCCACATTGGAGACGTCC
ATGAGTTGTTATTAAAATTACTACTCAAGGGATGAGAGCTGATATTGACG
CACAGTGGCTCAACCAGTCTCTTGAGAGTGCACCCTTTCCCTCGTCGAGG
GCTTTTATGGCGCTTGCAGAACCAGGCCGATACTGTACCGTGCTGAGTAT
CACAACAAAATATGCAGAGCACCCAGGTTTTATGCACCTGCATCATGTGG
GGCTTGTGGCCCTTGGTCGACCTCCCCTGGCATTACCTTCACTTCCCCCA
GACTATGTGCGCCTGTCTCGCGATGCATGCCATGCAGCTGACCGCTCTCA
TAACACACCACCTTAGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGC
AAGCCAGAGCCAACAAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCT
ATCCGCCTTGTCCAACACATCAGCCCCCGCCGACACAACCAGCAGCCCAT
TCTTAGAACTTTGATGGCATCACAAAAAATATCGCCATCAGCGGTGACAA
CAGCAAAGCATGCCTCGGTAGGTTCTGCGAGAGGTCATGAGGGGTCAATC
TGTGACCAGCATCAGCATTCTCTTGGCACCTCATTTCCATCCAGGACGGT
GTCTCTACTTCCAAGGAACGCAACTTCCTACTCTTCTTCATTGTGCCCTT
CCTTCTCGTCGTCATCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAACG
GAGCGGGATTTCCACGTGGTGGCGGACGCGACGCTGGACGAGGTGCAGGC
ATTGGTGGATAGTTTGGAGGACACAGTGGACGATTATGAGGCGAACTTAT
CGGTGCGTGTTTGGTTGGAGTAAGTCCAGAAAGGCAGTCTAGATACATAG
CTTCTATAACTTGGGGACTGGCATATTACGTTGGTGAACGAGGCGGTAGT
GTGTGAAAAATGCGTGCGTGGCTTGCCCGTGGGAATATAAGCCTGTGAGC
TGTTGTACAGGTCTGCGCATACAGATATGAGCACATCCAAGATTGCGGTA
TCGGCTCATGCGTGATTCGTTCGCCATCTCTTATCTGCATATTAACATAA
ACATACGTCTCTCCAACGTGTCTCGTTTTCAGTCTATCTCTTTCTTCCTC
TCCATCTTCACAGCAAGGCGTTCTCAACATCCTAATGGGTGAGCACGGGA
CCTGGGTACTGAATAAACAAACGCCCAACCGACAAATCTGGTGGTCTTCT
CCCTTAAGTGGTCCTATGCGCTTTGAGTATGATCCAAGCTTAAAACAATG
GGTGGCAACGCGAGGCAGGAAACAGTTGTTCACGTTGCTGGCGGAGGAGG
TACAGAAAGTGGCGGGTGTTGACATCCAGGCACGGCGAACCACCAAGCAT
TAAACATAGGATTAGTACGAGGGTTAGAAAATTGTATCAAAGAATCAAAT
GCAAGCGTCAA back to topCoding sequence (CDS) from alignment at chr7:783863..785623+ >NO07G02730.2 ID=NO07G02730.2|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr7:783863..785623+ (Nannochloropsis oceanica) ATGCGCGCTCCTTGCAATATGATGGCGGCTATCCGCCTTGTCCAACACAT CAGCCCCCGCCGACACAACCAGCAGCCCATTCTTAGAACTTTGATGGCAT CACAAAAAATATCGCCATCAGCGGTGACAACAGCAAAGCATGCCTCGGTA GGTTCTGCGAGAGGTCATGAGGGGTCAATCTGTGACCAGCATCAGCATTC TCTTGGCACCTCATTTCCATCCAGGACGGTGTCTCTACTTCCAAGGAACG CAACTTCCTACTCTTCTTCATTGTGCCCTTCCTTCTCGTCGTCATCCGGT ACCAGCGAGGTTGACGGAGGCTTTCAAACGGAGCGGGATTTCCACGTGGT GGCGGACGCGACGCTGGACGAGGTGCAGGCATTGGTGGATAGTTTGGAGG ACACAGTGGACGATTATGAGGCGAACTTATCGCAAGGCGTTCTCAACATC CTAATGGGTGAGCACGGGACCTGGGTACTGAATAAACAAACGCCCAACCG ACAAATCTGGTGGTCTTCTCCCTTAAGTGGTCCTATGCGCTTTGAGTATG ATCCAAGCTTAAAACAATGGGTGGCAACGCGAGGCAGGAAACAGTTGTTC ACGTTGCTGGCGGAGGAGGTACAGAAAGTGGCGGGTGTTGACATCCAGGC ACGGCGAACCACCAAGCATTAA back to top
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