NO07G02730.1, NO07G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02730.1
Unique NameNO07G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1373
Alignment locationchr7:783863..785623 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:783863..785623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02730.1 vs.
Match: EWM27088.1 (Frataxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 5.800e-45
Identity = 93/135 (68.89%), Postives = 109/135 (80.74%), Query Frame = 0 
Query:   12 ATSYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQAR 147
            AT +S  +  S  +++   +  GGF TERDFHVVAD TLDEVQA VD+LED V+DYEANLSQGVLNI MG HGTWVLNKQTPNRQIWWSSPLSGP+RFEYD + K WV TR R++LF LL EEV++VAG+DI+ R
Sbjct:   68 ATLFSHFVSSSSRTNAEEVQNQGGFPTERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRTR 202
The following BLAST results are available for this feature:
BLAST of NO07G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27088.15.800e-4568.89Frataxin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02730NO07G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02730.1NO07G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02730.1.cds1NO07G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02730.1.cds2NO07G02730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02730.1.cds3NO07G02730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02730.1 ID=NO07G02730.1|Name=NO07G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
AAAAAAAGATGATGACTGTGGGGTTTTAGGGCAGTGTGACAAGGAGCTTA
AATTAAACTTTCCATGGTCCACACTTGAACCCACGCGGTTTCCCATTGGC
GCCTAAAACCAACGCCTTAACCTCTCGGCCAAGTCATCACAGAGCAGTAG
TAGTACTCGCTCAACTAGAGTCTCACGAGAAGTTTCCATCGAAGAGTAGA
ACCCTTTATAAATTTCCAAGGGGGTCCAGGGAAGTGTAGAGTATTTTGGG
AAAGTACTGAAAAGGAGCCCAACGTACACAAACGTACACAACCTAGTCCC
AAAGTGGCGGAATCGTCAACCCGAGTGACAGGTCCACATTGGAGACGTCC
ATGAGTTGTTATTAAAATTACTACTCAAGGGATGAGAGCTGATATTGACG
CACAGTGGCTCAACCAGTCTCTTGAGAGTGCACCCTTTCCCTCGTCGAGG
GCTTTTATGGCGCTTGCAGAACCAGGCCGATACTGTACCGTGCTGAGTAT
CACAACAAAATATGCAGAGCACCCAGGTTTTATGCACCTGCATCATGTGG
GGCTTGTGGCCCTTGGTCGACCTCCCCTGGCATTACCTTCACTTCCCCCA
GACTATGTGCGCCTGTCTCGCGATGCATGCCATGCAGCTGACCGCTCTCA
TAACACACCACCTTAGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGC
AAGCCAGAGCCAACAAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCT
ATCCGCCTTGTCCAACACATCAGCCCCCGCCGACACAACCAGCAGCCCAT
TCTTAGAACTTTGATGGCATCACAAAAAATATCGCCATCAGCGGTGACAA
CAGCAAAGCATGCCTCGGACGGTGTCTCTACTTCCAAGGAACGCAACTTC
CTACTCTTCTTCATTGTGCCCTTCCTTCTCGTCGTCATCCGGTACCAGCG
AGGTTGACGGAGGCTTTCAAACGGAGCGGGATTTCCACGTGGTGGCGGAC
GCGACGCTGGACGAGGTGCAGGCATTGGTGGATAGTTTGGAGGACACAGT
GGACGATTATGAGGCGAACTTATCGCAAGGCGTTCTCAACATCCTAATGG
GTGAGCACGGGACCTGGGTACTGAATAAACAAACGCCCAACCGACAAATC
TGGTGGTCTTCTCCCTTAAGTGGTCCTATGCGCTTTGAGTATGATCCAAG
CTTAAAACAATGGGTGGCAACGCGAGGCAGGAAACAGTTGTTCACGTTGC
TGGCGGAGGAGGTACAGAAAGTGGCGGGTGTTGACATCCAGGCACGGCGA
ACCACCAAGCATTAAACATAGGATTAGTACGAGGGTTAGAAAATTGTATC
AAAGAATCAAATGCAAGCGTCAA
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protein sequence of NO07G02730.1

>NO07G02730.1-protein ID=NO07G02730.1-protein|Name=NO07G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MPRTVSLLPRNATSYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATL
DEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWS
SPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQARRTTK
H*
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mRNA from alignment at chr7:783863..785623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02730.1 ID=NO07G02730.1|Name=NO07G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at chr7:783863..785623+ (Nannochloropsis oceanica)
AAAAAAAGATGATGACTGTGGGGTTTTAGGGCAGTGTGACAAGGAGCTTA
AATTAAACTTTCCATGGTCCACACTTGAACCCACGCGGTTTCCCATTGGC
GCCTAAAACCAACGCCTTAACCTCTCGGCCAAGTCATCACAGAGCAGTAG
TAGTACTCGCTCAACTAGAGTCTCACGAGAAGTTTCCATCGAAGAGTAGA
ACCCTTTATAAATTTCCAAGGGGGTCCAGGGAAGTGTAGAGTATTTTGGG
AAAGTACTGAAAAGGAGCCCAACGTACACAAACGTACACAACCTAGTCCC
AAAGTGGCGGAATCGTCAACCCGAGTGACAGGTCCACATTGGAGACGTCC
ATGAGTTGTTATTAAAATTACTACTCAAGGGATGAGAGCTGATATTGACG
CACAGTGGCTCAACCAGTCTCTTGAGAGTGCACCCTTTCCCTCGTCGAGG
GCTTTTATGGCGCTTGCAGAACCAGGCCGATACTGTACCGTGCTGAGTAT
CACAACAAAATATGCAGAGCACCCAGGTTTTATGCACCTGCATCATGTGG
GGCTTGTGGCCCTTGGTCGACCTCCCCTGGCATTACCTTCACTTCCCCCA
GACTATGTGCGCCTGTCTCGCGATGCATGCCATGCAGCTGACCGCTCTCA
TAACACACCACCTTAGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGC
AAGCCAGAGCCAACAAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCT
ATCCGCCTTGTCCAACACATCAGCCCCCGCCGACACAACCAGCAGCCCAT
TCTTAGAACTTTGATGGCATCACAAAAAATATCGCCATCAGCGGTGACAA
CAGCAAAGCATGCCTCGGTAGGTTCTGCGAGAGGTCATGAGGGGTCAATC
TGTGACCAGCATCAGCATTCTCTTGGCACCTCATTTCCATCCAGGACGGT
GTCTCTACTTCCAAGGAACGCAACTTCCTACTCTTCTTCATTGTGCCCTT
CCTTCTCGTCGTCATCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAACG
GAGCGGGATTTCCACGTGGTGGCGGACGCGACGCTGGACGAGGTGCAGGC
ATTGGTGGATAGTTTGGAGGACACAGTGGACGATTATGAGGCGAACTTAT
CGGTGCGTGTTTGGTTGGAGTAAGTCCAGAAAGGCAGTCTAGATACATAG
CTTCTATAACTTGGGGACTGGCATATTACGTTGGTGAACGAGGCGGTAGT
GTGTGAAAAATGCGTGCGTGGCTTGCCCGTGGGAATATAAGCCTGTGAGC
TGTTGTACAGGTCTGCGCATACAGATATGAGCACATCCAAGATTGCGGTA
TCGGCTCATGCGTGATTCGTTCGCCATCTCTTATCTGCATATTAACATAA
ACATACGTCTCTCCAACGTGTCTCGTTTTCAGTCTATCTCTTTCTTCCTC
TCCATCTTCACAGCAAGGCGTTCTCAACATCCTAATGGGTGAGCACGGGA
CCTGGGTACTGAATAAACAAACGCCCAACCGACAAATCTGGTGGTCTTCT
CCCTTAAGTGGTCCTATGCGCTTTGAGTATGATCCAAGCTTAAAACAATG
GGTGGCAACGCGAGGCAGGAAACAGTTGTTCACGTTGCTGGCGGAGGAGG
TACAGAAAGTGGCGGGTGTTGACATCCAGGCACGGCGAACCACCAAGCAT
TAAACATAGGATTAGTACGAGGGTTAGAAAATTGTATCAAAGAATCAAAT
GCAAGCGTCAA
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Coding sequence (CDS) from alignment at chr7:783863..785623+

>NO07G02730.1 ID=NO07G02730.1|Name=NO07G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at chr7:783863..785623+ (Nannochloropsis oceanica)
ATGCCTCGGACGGTGTCTCTACTTCCAAGGAACGCAACTTCCTACTCTTC
TTCATTGTGCCCTTCCTTCTCGTCGTCATCCGGTACCAGCGAGGTTGACG
GAGGCTTTCAAACGGAGCGGGATTTCCACGTGGTGGCGGACGCGACGCTG
GACGAGGTGCAGGCATTGGTGGATAGTTTGGAGGACACAGTGGACGATTA
TGAGGCGAACTTATCGCAAGGCGTTCTCAACATCCTAATGGGTGAGCACG
GGACCTGGGTACTGAATAAACAAACGCCCAACCGACAAATCTGGTGGTCT
TCTCCCTTAAGTGGTCCTATGCGCTTTGAGTATGATCCAAGCTTAAAACA
ATGGGTGGCAACGCGAGGCAGGAAACAGTTGTTCACGTTGCTGGCGGAGG
AGGTACAGAAAGTGGCGGGTGTTGACATCCAGGCACGGCGAACCACCAAG
CATTAA
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Synonyms
Publications