NO07G02730, NO07G02730 (gene) Nannochloropsis oceanica

Overview
NameNO07G02730
Unique NameNO07G02730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1761
Alignment locationchr7:783863..785623 +

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Properties
Property NameValue
DescriptionFrataxin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:783863..785623 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008199ferric iron binding
GO:0008199ferric iron binding
GO:0004322ferroxidase activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
GO:0055114oxidation-reduction process
GO:0016226iron-sulfur cluster assembly
GO:0016043cellular component organization
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR002908Frataxin/CyaY
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Homology
[Close]
BLAST of NO07G02730 vs. NCBI_GenBank
Match: EWM27088.1 (Frataxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 5.800e-45
Identity = 93/135 (68.89%), Postives = 109/135 (80.74%), Query Frame = 0 
Query:   12 ATSYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQAR 147
            AT +S  +  S  +++   +  GGF TERDFHVVAD TLDEVQA VD+LED V+DYEANLSQGVLNI MG HGTWVLNKQTPNRQIWWSSPLSGP+RFEYD + K WV TR R++LF LL EEV++VAG+DI+ R
Sbjct:   68 ATLFSHFVSSSSRTNAEEVQNQGGFPTERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRTR 202
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BLAST of NO07G02730 vs. NCBI_GenBank
Match: ETP43103.1 (hypothetical protein F442_10037 [Phytophthora parasitica P10297])

HSP 1 Score: 120.9 bits (302), Expect = 3.300e-24
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:   38 TERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDI 144
            TE +F  +AD TL ++Q+ +D +E+ +++ +   SQGVL I +GEHGTWV+N+Q PNRQIWWSSP+SGP R+EYD     WV TR R +L  LL  E+    G++I
Sbjct:   62 TENEFMELADETLHDIQSWLDGIEEMIEESDIMFSQGVLKIDLGEHGTWVINRQVPNRQIWWSSPVSGPRRYEYDAESGHWVNTRDRGELMELLRTEILDKTGIEI 167
[Close]
BLAST of NO07G02730 vs. NCBI_GenBank
Match: XP_009526214.1 (hypothetical protein PHYSODRAFT_354548 [Phytophthora sojae] >EGZ17156.1 hypothetical protein PHYSODRAFT_354548 [Phytophthora sojae])

HSP 1 Score: 120.2 bits (300), Expect = 5.700e-24
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:   38 TERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDI 144
            TE +F  +AD TL ++Q+ +D +E+ +++ +   SQGVL I +G+HGTWV+N+Q PNRQIWWSSP+SGP R+EYD     WV TR R +L  LL  E+    G++I
Sbjct:   63 TEHEFMELADETLHDIQSWLDGIEEMLEESDVMFSQGVLKIDLGDHGTWVINRQVPNRQIWWSSPISGPRRYEYDGESGNWVNTRDRGELVELLRSEILDATGIEI 168
[Close]
BLAST of NO07G02730 vs. NCBI_GenBank
Match: XP_008893220.1 (hypothetical protein PPTG_01604 [Phytophthora parasitica INRA-310] >ETI45222.1 hypothetical protein F443_10129 [Phytophthora parasitica P1569] >ETL38637.1 hypothetical protein L916_09826 [Phytophthora parasitica] >ETL91737.1 hypothetical protein L917_09744 [Phytophthora parasitica] >ETM45034.1 hypothetical protein L914_09797 [Phytophthora parasitica] >ETN21422.1 hypothetical protein PPTG_01604 [Phytophthora parasitica INRA-310] >ETO73887.1 hypothetical protein F444_10226 [Phytophthora parasitica P1976] >ETP15036.1 hypothetical protein F441_10070 [Phytophthora parasitica CJ01A1] >KUF78234.1 Frataxin [Phytophthora nicotianae] >KUF89802.1 hypothetical protein AM588_10002428 [Phytophthora nicotianae])

HSP 1 Score: 120.2 bits (300), Expect = 5.700e-24
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:   38 TERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDI 144
            TE +F  +AD TL ++Q+ +D +E+ +++ +   SQGVL I +GEHGTWV+N+Q PNRQIWWSSP+SGP R+EYD     WV TR R +L  LL  E+    G++I
Sbjct:   62 TENEFMELADETLHDIQSWLDGIEEMLEESDIMFSQGVLKIDLGEHGTWVINRQVPNRQIWWSSPVSGPRRYEYDAESGHWVNTRDRGELMELLRTEILDKTGIEI 167
[Close]
BLAST of NO07G02730 vs. NCBI_GenBank
Match: ETK85189.1 (hypothetical protein L915_09916 [Phytophthora parasitica])

HSP 1 Score: 120.2 bits (300), Expect = 5.700e-24
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:   38 TERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDI 144
            TE +F  +AD TL ++Q+ +D +E+ +++ +   SQGVL I +GEHGTWV+N+Q PNRQIWWSSP+SGP R+EYD     WV TR R +L  LL  E+    G++I
Sbjct:   62 TENEFMELADETLHDIQSWLDGIEEMLEESDIMFSQGVLKIDLGEHGTWVINRQVPNRQIWWSSPVSGPRRYEYDAESGHWVNTRDRGELMELLRTEILDKTGIEI 167
[Close]
BLAST of NO07G02730 vs. NCBI_GenBank
Match: GAX20657.1 (hypothetical protein FisN_32Hu042 [Fistulifera solaris])

HSP 1 Score: 119.4 bits (298), Expect = 9.700e-24
Identity = 59/104 (56.73%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   36 FQTERDFHVVADATLDEVQALVDS-LEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKV 139
            F+TE +FH VAD  L+ +Q  VD  LE    DYE NL+ GVL + M  HGTWVLNKQTPNRQIWWSSPLSGP RFE+DP  K W +T+    L   L +E+  V
Sbjct:    9 FETEAEFHNVADEALETIQDTVDEMLEPKNIDYEINLASGVLTLKMRPHGTWVLNKQTPNRQIWWSSPLSGPKRFEFDPKDKLWFSTKDGLNLGRTLMQEIHHV 112
[Close]
BLAST of NO07G02730 vs. NCBI_GenBank
Match: XP_008607148.1 (hypothetical protein SDRG_03295 [Saprolegnia diclina VS20] >EQC39087.1 hypothetical protein SDRG_03295 [Saprolegnia diclina VS20])

HSP 1 Score: 117.9 bits (294), Expect = 2.800e-23
Identity = 63/129 (48.84%), Postives = 85/129 (65.89%), Query Frame = 0 
Query:   14 SYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQ-LFTLLAEEVQKVAGV 142
            S S +L  S + +  T  V  G  TE +F  ++D  L+++  ++D +E  + D +  LSQGVL I +GE GTWVLNKQ PNRQIWWSSP+SGP RFEYD  LK+W  TR ++Q L  LL EEV+ + G+
Sbjct:   32 SSSRALVASRTMAFSTETVVPG-MTESEFMKLSDVVLNDILEMMDGIEAILPDADITLSQGVLTINLGEDGTWVLNKQGPNRQIWWSSPVSGPKRFEYDSRLKKWFNTREKQQELVELLTEEVEDITGI 159
[Close]
BLAST of NO07G02730 vs. NCBI_GenBank
Match: XP_002907960.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61043.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 117.9 bits (294), Expect = 2.800e-23
Identity = 52/105 (49.52%), Postives = 73/105 (69.52%), Query Frame = 0 
Query:   39 ERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDI 144
            E +F  +AD TL  +Q+ +D +E+ +++ +   SQGVL I +GEHGTWV+N+Q PNRQIWWSSP+SGP R+EYD     WV TR + +L  LL  E+  V G++I
Sbjct:   25 ENEFMELADETLHGIQSWLDGIEEMLEESDIMFSQGVLKIDLGEHGTWVINRQVPNRQIWWSSPVSGPRRYEYDAESGHWVNTRDKGELMELLRAEILDVTGIEI 129
[Close]
BLAST of NO07G02730 vs. NCBI_GenBank
Match: OQR84061.1 (hypothetical protein ACHHYP_13938 [Achlya hypogyna])

HSP 1 Score: 117.9 bits (294), Expect = 2.800e-23
Identity = 63/143 (44.06%), Postives = 92/143 (64.34%), Query Frame = 0 
Query:    1 MPRTVSLLPRNAT-SYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQ-LFTLLAEEVQKVAGV 142
            +PR   L P +    +  S+  +FS+ +  S +     TE +F  ++D  L+++  ++D +E  + D +  LSQGVL I +GE GTWVLNKQ PNRQIWWSSP+SGP RFEYD  LK+W  TR ++Q L  LL +EV+++ G+
Sbjct:  370 VPRLRLLAPASRNPMHRFSVAKAFSTEAAPSGM-----TESEFMKLSDVVLNDILEMMDGIEAILPDADITLSQGVLTINLGEDGTWVLNKQAPNRQIWWSSPVSGPKRFEYDARLKKWFNTREKQQELVDLLTDEVEEITGI 507
[Close]
BLAST of NO07G02730 vs. NCBI_GenBank
Match: OQS03992.1 (hypothetical protein THRCLA_03728 [Thraustotheca clavata])

HSP 1 Score: 117.1 bits (292), Expect = 4.800e-23
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 0 
Query:   39 ERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQ-LFTLLAEEVQKVAGV 142
            E +FH + D  L ++  L+D +E  + D +  L+QGVL I +GE GTWVLNKQ PNRQIWWSSP+SGP RFEYD  LK+W  TR ++Q L  LL  EV+ + G+
Sbjct:  359 ESEFHNLTDVVLTDILELMDGIEAVLPDADITLAQGVLTINLGEDGTWVLNKQAPNRQIWWSSPVSGPKRFEYDGRLKKWFNTREKEQELVELLMAEVEDITGI 462
The following BLAST results are available for this feature:
BLAST of NO07G02730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27088.15.800e-4568.89Frataxin-like protein [Nannochloropsis gaditana][more]
ETP43103.13.300e-2450.00hypothetical protein F442_10037 [Phytophthora para... [more]
XP_009526214.15.700e-2449.06hypothetical protein PHYSODRAFT_354548 [Phytophtho... [more]
XP_008893220.15.700e-2450.00hypothetical protein PPTG_01604 [Phytophthora para... [more]
ETK85189.15.700e-2450.00hypothetical protein L915_09916 [Phytophthora para... [more]
GAX20657.19.700e-2456.73hypothetical protein FisN_32Hu042 [Fistulifera sol... [more]
XP_008607148.12.800e-2348.84hypothetical protein SDRG_03295 [Saprolegnia dicli... [more]
XP_002907960.12.800e-2349.52conserved hypothetical protein [Phytophthora infes... [more]
OQR84061.12.800e-2344.06hypothetical protein ACHHYP_13938 [Achlya hypogyna... [more]
OQS03992.14.800e-2352.88hypothetical protein THRCLA_03728 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000579NSK000579Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02730.1NO07G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G02730.2NO07G02730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580905gene_2605Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g37gene3457Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02730.1NO07G02730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G02730.2NO07G02730.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02730 ID=NO07G02730|Name=NO07G02730|organism=Nannochloropsis oceanica|type=gene|length=1761bp
AAAAAAAGATGATGACTGTGGGGTTTTAGGGCAGTGTGACAAGGAGCTTA
AATTAAACTTTCCATGGTCCACACTTGAACCCACGCGGTTTCCCATTGGC
GCCTAAAACCAACGCCTTAACCTCTCGGCCAAGTCATCACAGAGCAGTAG
TAGTACTCGCTCAACTAGAGTCTCACGAGAAGTTTCCATCGAAGAGTAGA
ACCCTTTATAAATTTCCAAGGGGGTCCAGGGAAGTGTAGAGTATTTTGGG
AAAGTACTGAAAAGGAGCCCAACGTACACAAACGTACACAACCTAGTCCC
AAAGTGGCGGAATCGTCAACCCGAGTGACAGGTCCACATTGGAGACGTCC
ATGAGTTGTTATTAAAATTACTACTCAAGGGATGAGAGCTGATATTGACG
CACAGTGGCTCAACCAGTCTCTTGAGAGTGCACCCTTTCCCTCGTCGAGG
GCTTTTATGGCGCTTGCAGAACCAGGCCGATACTGTACCGTGCTGAGTAT
CACAACAAAATATGCAGAGCACCCAGGTTTTATGCACCTGCATCATGTGG
GGCTTGTGGCCCTTGGTCGACCTCCCCTGGCATTACCTTCACTTCCCCCA
GACTATGTGCGCCTGTCTCGCGATGCATGCCATGCAGCTGACCGCTCTCA
TAACACACCACCTTAGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGC
AAGCCAGAGCCAACAAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCT
ATCCGCCTTGTCCAACACATCAGCCCCCGCCGACACAACCAGCAGCCCAT
TCTTAGAACTTTGATGGCATCACAAAAAATATCGCCATCAGCGGTGACAA
CAGCAAAGCATGCCTCGgtaggttctgcgagaggtcatgaggggtcaatc
tgtgaccagcatcagcattctcttggcacctcatttccatccagGACGGT
GTCTCTACTTCCAAGGAACGCAACTTCCTACTCTTCTTCATTGTGCCCTT
CCTTCTCGTCGTCATCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAACG
GAGCGGGATTTCCACGTGGTGGCGGACGCGACGCTGGACGAGGTGCAGGC
ATTGGTGGATAGTTTGGAGGACACAGTGGACGATTATGAGGCGAACTTAT
CGgtgcgtgtttggttggagtaagtccagaaaggcagtctagatacatag
cttctataacttggggactggcatattacgttggtgaacgaggcggtagt
gtgtgaaaaatgcgtgcgtggcttgcccgtgggaatataagcctgtgagc
tgttgtacaggtctgcgcatacagatatgagcacatccaagattgcggta
tcggctcatgcgtgattcgttcgccatctcttatctgcatattaacataa
acatacgtctctccaacgtgtctcgttttcagtctatctctttcttcctc
tccatcttcacagCAAGGCGTTCTCAACATCCTAATGGGTGAGCACGGGA
CCTGGGTACTGAATAAACAAACGCCCAACCGACAAATCTGGTGGTCTTCT
CCCTTAAGTGGTCCTATGCGCTTTGAGTATGATCCAAGCTTAAAACAATG
GGTGGCAACGCGAGGCAGGAAACAGTTGTTCACGTTGCTGGCGGAGGAGG
TACAGAAAGTGGCGGGTGTTGACATCCAGGCACGGCGAACCACCAAGCAT
TAAACATAGGATTAGTACGAGGGTTAGAAAATTGTATCAAAGAATCAAAT
GCAAGCGTCAA
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protein sequence of NO07G02730.1

>NO07G02730.1-protein ID=NO07G02730.1-protein|Name=NO07G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MPRTVSLLPRNATSYSSSLCPSFSSSSGTSEVDGGFQTERDFHVVADATL
DEVQALVDSLEDTVDDYEANLSQGVLNILMGEHGTWVLNKQTPNRQIWWS
SPLSGPMRFEYDPSLKQWVATRGRKQLFTLLAEEVQKVAGVDIQARRTTK
H*
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protein sequence of NO07G02730.2

>NO07G02730.2-protein ID=NO07G02730.2-protein|Name=NO07G02730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MRAPCNMMAAIRLVQHISPRRHNQQPILRTLMASQKISPSAVTTAKHASV
GSARGHEGSICDQHQHSLGTSFPSRTVSLLPRNATSYSSSLCPSFSSSSG
TSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNI
LMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLF
TLLAEEVQKVAGVDIQARRTTKH*
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Synonyms
Publications