NO07G02430, NO07G02430 (gene) Nannochloropsis oceanica

Overview
NameNO07G02430
Unique NameNO07G02430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1409
Alignment locationchr7:705047..706455 -

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Properties
Property NameValue
DescriptionSmall nuclear ribonucleoprotein associated protein b
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:705047..706455 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
Homology
BLAST of NO07G02430 vs. NCBI_GenBank
Match: EWM27128.1 (small nuclear ribonucleoprotein associated protein b [Nannochloropsis gaditana])

HSP 1 Score: 200.7 bits (509), Expect = 4.800e-48
Identity = 111/132 (84.09%), Postives = 113/132 (85.61%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXAKATPGGPGIGRAAGRGIAVGAPVMGAPVGLA 133
            MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVK+KKGS   GP            MLGLVLLRGENVVSLTVEGP XX   AKATPGGPG+GRAAGRGIAVGAPVMGAPVGLA
Sbjct:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGP-TAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPXXDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLA 165          
BLAST of NO07G02430 vs. NCBI_GenBank
Match: GAQ88900.1 (snRNP [Klebsormidium nitens])

HSP 1 Score: 160.2 bits (404), Expect = 7.200e-36
Identity = 93/153 (60.78%), Postives = 108/153 (70.59%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGP---XXXXXXAKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTPAG 151
            MSMSKSSK+L++INYRMRVT+QD R LVG FMAFD+HMNLVLGDCEE+RK+  KKG ++                LGL+LLRGE VVSLTVEGP         A A  GGPG+GRAAGRGI   AP+  A  GLAGPVRG+GGPA ++M P G
Sbjct:    1 MSMSKSSKLLHHINYRMRVTLQDGRQLVGKFMAFDKHMNLVLGDCEEFRKLPQKKGKSA--------EDREERRTLGLLLLRGEEVVSLTVEGPPPQEESRAKAMAASGGPGVGRAAGRGIPT-APLGQAAPGLAGPVRGVGGPAAAMMQPQG 144          
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_016165879.1 (small nuclear ribonucleoprotein-associated proteins B and B' [Arachis ipaensis] >XP_020962665.1 small nuclear ribonucleoprotein-associated proteins B and B' [Arachis ipaensis])

HSP 1 Score: 158.7 bits (400), Expect = 2.100e-35
Identity = 95/153 (62.09%), Postives = 103/153 (67.32%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXA-----KATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149
            MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KG  +                LGLVLLRGE V+S+TVEGP             A  GGPGIGRAAGRGI   APV+ A  GLAGPVRG+GGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTA-----PGEDREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNAAAMGGPGIGRAAGRGIP-AAPVVQAQPGLAGPVRGVGGPAPGMMQP 147          
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_017430706.1 (PREDICTED: small nuclear ribonucleoprotein-associated protein B-like [Vigna angularis] >KOM46495.1 hypothetical protein LR48_Vigan07g019900 [Vigna angularis])

HSP 1 Score: 157.9 bits (398), Expect = 3.600e-35
Identity = 100/155 (64.52%), Postives = 107/155 (69.03%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGS--ASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXAKATPG-----GPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149
            MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KG   A GG              LGLVLLRGE V+S+TVEGP XXX       G     GPGIGRAAGRGI   APV+ A  GLAGPVRG+GGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGG-------DREDRRTLGLVLLRGEEVISMTVEGPPXXXESRSKAVGAAALAGPGIGRAAGRGIP-PAPVVQAQPGLAGPVRGVGGPAPGMMQP 147          
BLAST of NO07G02430 vs. NCBI_GenBank
Match: BAT80740.1 (hypothetical protein VIGAN_03033900 [Vigna angularis var. angularis])

HSP 1 Score: 157.9 bits (398), Expect = 3.600e-35
Identity = 100/155 (64.52%), Postives = 107/155 (69.03%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGS--ASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXAKATPG-----GPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149
            MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KG   A GG              LGLVLLRGE V+S+TVEGP XXX       G     GPGIGRAAGRGI   APV+ A  GLAGPVRG+GGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGG-------DREDRRTLGLVLLRGEEVISMTVEGPPXXXESRSKAVGAAALAGPGIGRAAGRGIP-PAPVVQAQPGLAGPVRGVGGPAPGMMQP 147          
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_007142248.1 (hypothetical protein PHAVU_008G264900g [Phaseolus vulgaris] >ESW14242.1 hypothetical protein PHAVU_008G264900g [Phaseolus vulgaris])

HSP 1 Score: 157.5 bits (397), Expect = 4.700e-35
Identity = 101/155 (65.16%), Postives = 109/155 (70.32%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGS--ASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGP-----XXXXXXAKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149
            MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KG   A GG              LGLVLLRGE V+S+TVEGP     XXXX  + A   GPGIGRAAGRGI   APV+ A  GLAGPVRG+GGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPADGG-------DREDRRTLGLVLLRGEEVISMTVEGPPXXXXXXXXAVSAAALAGPGIGRAAGRGIP-PAPVIQAQPGLAGPVRGVGGPAPGMMQP 147          
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_014505197.1 (small nuclear ribonucleoprotein-associated protein B [Vigna radiata var. radiata])

HSP 1 Score: 157.5 bits (397), Expect = 4.700e-35
Identity = 102/155 (65.81%), Postives = 110/155 (70.97%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGS--ASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGP-----XXXXXXAKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149
            MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KG   A GG              LGLVLLRGE V+S+TVEGP     XXXXX + A   GPGIGRAAGRGI   APV+ A  GLAGPVRG+GGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGG-------DREDRRTLGLVLLRGEEVISMTVEGPPXXXXXXXXXVSAAALAGPGIGRAAGRGIP-PAPVVQAQPGLAGPVRGVGGPAPGMMQP 147          
BLAST of NO07G02430 vs. NCBI_GenBank
Match: POE70722.1 (small nuclear ribonucleoprotein-associated protein b' [Quercus suber])

HSP 1 Score: 157.5 bits (397), Expect = 4.700e-35
Identity = 98/153 (64.05%), Postives = 108/153 (70.59%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXA-----KATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149
            MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+R + S KG  +                LGLVLLRGE V+S+TVEGP XXXXX       A   GPGIGRAAGRGI  G P++ A  GLAGPVRG+GGPA ++M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRNLPSSKGKTA---------PTEDRRTLGLVLLRGEEVISMTVEGPPXXXXXRAKAANAAAMAGPGIGRAAGRGIPTG-PLIQAQPGLAGPVRGVGGPAPNMMQP 143          
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_023884273.1 (small nuclear ribonucleoprotein-associated protein B'-like [Quercus suber])

HSP 1 Score: 157.5 bits (397), Expect = 4.700e-35
Identity = 98/153 (64.05%), Postives = 108/153 (70.59%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXA-----KATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149
            MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+R + S KG  +                LGLVLLRGE V+S+TVEGP XXXXX       A   GPGIGRAAGRGI  G P++ A  GLAGPVRG+GGPA ++M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRNLPSSKGKTA---------PTEDRRTLGLVLLRGEEVISMTVEGPPXXXXXRAKAANAAAMAGPGIGRAAGRGIPTG-PLIQAQPGLAGPVRGVGGPAPNMMQP 143          
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_004229936.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [Solanum lycopersicum])

HSP 1 Score: 157.1 bits (396), Expect = 6.100e-35
Identity = 94/154 (61.04%), Postives = 104/154 (67.53%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEG-PXXXXXXAKATP-----GGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149
            MSMSKSSKML YINYRMRVTIQD R L+G FMAFDRHMNLVLGDCEE+RK+   KGS                  LGLVLLRGE V+S+TVEG P       KAT       GPGIGRAAGRG+  G P++ A  GLAGPVRG+GGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPTKGSKE---------EREDRRTLGLVLLRGEEVISMTVEGPPPPDDSRVKATTAGSAVSGPGIGRAAGRGVPTG-PLVHAQPGLAGPVRGVGGPAPGMMQP 144          
The following BLAST results are available for this feature:
BLAST of NO07G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27128.14.800e-4884.09small nuclear ribonucleoprotein associated protein... [more]
GAQ88900.17.200e-3660.78snRNP [Klebsormidium nitens][more]
XP_016165879.12.100e-3562.09small nuclear ribonucleoprotein-associated protein... [more]
XP_017430706.13.600e-3564.52PREDICTED: small nuclear ribonucleoprotein-associa... [more]
BAT80740.13.600e-3564.52hypothetical protein VIGAN_03033900 [Vigna angular... [more]
XP_007142248.14.700e-3565.16hypothetical protein PHAVU_008G264900g [Phaseolus ... [more]
XP_014505197.14.700e-3565.81small nuclear ribonucleoprotein-associated protein... [more]
POE70722.14.700e-3564.05small nuclear ribonucleoprotein-associated protein... [more]
XP_023884273.14.700e-3564.05small nuclear ribonucleoprotein-associated protein... [more]
XP_004229936.16.100e-3561.04PREDICTED: small nuclear ribonucleoprotein-associa... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000617NSK000617Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02430.1NO07G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580795gene_2567Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SmBgene3421Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02430.1NO07G02430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02430 ID=NO07G02430|Name=NO07G02430|organism=Nannochloropsis oceanica|type=gene|length=1409bp
ATGgtacgtattttgggtgcggtgttggttggctcccctcactcgttctc
cacgccgtgcgtgcctgtagtgatcccaattatccccccctcttcatgtt
gcactcgttgtctgtttcatgcgtttaattgccatcactccccatcaacc
cattttcgacactccaaatcatcatcaatcactctatccttctaccttgc
cttctcccccaccccccgaatctctcccctcccctccacagTCGATGTCT
AAGAGCAGCAAGATGCTCAACTACATCAATTATCGGATGCGGGTCACCAT
TCAAGACAACCGCACTTTAGTCGGGACCTTTATGGCTTTCGACCGACACA
TGAATCTGGTGTTGGGCGACTGTGAAGAGTATCGCAAAGTCAAGAGCAAA
AAAGGCAGTGCTTCCGGCGGCCCCGCGGCGGGGATTGTTGAGGAGAAAGA
GGAGAAACGCATGTTGGGTTTGGTCTTGTTACGAGGAGAGAACGTTGTGT
CTTTGACGGTGGAAGGGCCGCCACCGCCGGATGAGGAGGCGAAAGCCACG
CCGGGGGGGCCCGGGATTGGGCGGGCGGCCGGAAGAGGGATTGCGGTGGG
CGCGCCTGTGATGGGAGCACCAGTGGGCTTGGCGGGCCCCGTGAGGGGGA
TTGGCGGACCAGCGCAGTCGTTGATGACACCTGCGGGAGgtgcgtgaaag
agggggggttggagagacatttggtgggggatggcaaagtttggtggtat
cggtgcgctcaaacgcgcgagtatgtggctgtgtctgtggctgtgtctgt
gtctgcgtctgtcgtctctttctgcgatttttctttttttgatatatgtc
tgcctctatatggtggtatgtgcacatccgtgtggaaggccacacctata
gaggggcgagactttcgacgggacgccgggtgctcaccgggcactacgat
ggggctcccatcagttctactcgcccacattcatgcaccgcttgcccacg
cttcgtcttcacgcgcgggctctttctaatgccctgaatgcgttaatttt
gattgggccacacaaagtatttcctcgctgtaatttatcagtgataattc
cattcgctcctccttttaaatcattccctcttgatgctcatcctgtaatc
accccgttgtccatcctttcttccccttctcctattcaaaccagGGCCTC
AAGGCTTCCCCCCCCGCGGCCCTTCGCCACCAGGGATGGGTATGGGCTAT
CCCCCTCCTCGTGGCCCCCCTCCTCCGGGTATGGGGGGTGGCATGCCGCC
AGGCTATCCCCCCCAAGGACAGGGGCCGCCTCCCGGTGGCTTTCCCCCTG
GCCCTCCTCCTCGCGGGTTTCCGCCTGGGATGCCCCCGAGGCCGTTGCCG
CCCAGGTAG
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protein sequence of NO07G02430.1

>NO07G02430.1-protein ID=NO07G02430.1-protein|Name=NO07G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRK
VKSKKGSASGGPAAGIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE
AKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTPAG
GPQGFPPRGPSPPGMGMGYPPPRGPPPPGMGGGMPPGYPPQGQGPPPGGF
PPGPPPRGFPPGMPPRPLPPR*
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Synonyms
Publications