NO07G02430.1, NO07G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02430.1
Unique NameNO07G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr7:705047..706455 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:705047..706455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G02430.1 vs.
Match: EWM27128.1 (small nuclear ribonucleoprotein associated protein b [Nannochloropsis gaditana])

HSP 1 Score: 270.0 bits (689), Expect = 6.500e-69
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0
Query:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPAAGIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTPA 150
            MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVK+KKGS   GP A IVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPG+GRAAGRGIAVGAPVMGAPVGLAGPVRG+GGPAQSLMTPA
Sbjct:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTA-IVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPA 182          
The following BLAST results are available for this feature:
BLAST of NO07G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27128.16.500e-6994.63small nuclear ribonucleoprotein associated protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02430NO07G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02430.1NO07G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02430.1.cds1NO07G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02430.1.cds2NO07G02430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02430.1.cds3NO07G02430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02430.1 ID=NO07G02430.1|Name=NO07G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
ATGTCGATGTCTAAGAGCAGCAAGATGCTCAACTACATCAATTATCGGAT
GCGGGTCACCATTCAAGACAACCGCACTTTAGTCGGGACCTTTATGGCTT
TCGACCGACACATGAATCTGGTGTTGGGCGACTGTGAAGAGTATCGCAAA
GTCAAGAGCAAAAAAGGCAGTGCTTCCGGCGGCCCCGCGGCGGGGATTGT
TGAGGAGAAAGAGGAGAAACGCATGTTGGGTTTGGTCTTGTTACGAGGAG
AGAACGTTGTGTCTTTGACGGTGGAAGGGCCGCCACCGCCGGATGAGGAG
GCGAAAGCCACGCCGGGGGGGCCCGGGATTGGGCGGGCGGCCGGAAGAGG
GATTGCGGTGGGCGCGCCTGTGATGGGAGCACCAGTGGGCTTGGCGGGCC
CCGTGAGGGGGATTGGCGGACCAGCGCAGTCGTTGATGACACCTGCGGGA
GGGCCTCAAGGCTTCCCCCCCCGCGGCCCTTCGCCACCAGGGATGGGTAT
GGGCTATCCCCCTCCTCGTGGCCCCCCTCCTCCGGGTATGGGGGGTGGCA
TGCCGCCAGGCTATCCCCCCCAAGGACAGGGGCCGCCTCCCGGTGGCTTT
CCCCCTGGCCCTCCTCCTCGCGGGTTTCCGCCTGGGATGCCCCCGAGGCC
GTTGCCGCCCAGGTAG
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protein sequence of NO07G02430.1

>NO07G02430.1-protein ID=NO07G02430.1-protein|Name=NO07G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRK
VKSKKGSASGGPAAGIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE
AKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTPAG
GPQGFPPRGPSPPGMGMGYPPPRGPPPPGMGGGMPPGYPPQGQGPPPGGF
PPGPPPRGFPPGMPPRPLPPR*
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mRNA from alignment at chr7:705047..706455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02430.1 ID=NO07G02430.1|Name=NO07G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp|location=Sequence derived from alignment at chr7:705047..706455- (Nannochloropsis oceanica)
ATGGTACGTATTTTGGGTGCGGTGTTGGTTGGCTCCCCTCACTCGTTCTC CACGCCGTGCGTGCCTGTAGTGATCCCAATTATCCCCCCCTCTTCATGTT GCACTCGTTGTCTGTTTCATGCGTTTAATTGCCATCACTCCCCATCAACC CATTTTCGACACTCCAAATCATCATCAATCACTCTATCCTTCTACCTTGC CTTCTCCCCCACCCCCCGAATCTCTCCCCTCCCCTCCACAGTCGATGTCT AAGAGCAGCAAGATGCTCAACTACATCAATTATCGGATGCGGGTCACCAT TCAAGACAACCGCACTTTAGTCGGGACCTTTATGGCTTTCGACCGACACA TGAATCTGGTGTTGGGCGACTGTGAAGAGTATCGCAAAGTCAAGAGCAAA AAAGGCAGTGCTTCCGGCGGCCCCGCGGCGGGGATTGTTGAGGAGAAAGA GGAGAAACGCATGTTGGGTTTGGTCTTGTTACGAGGAGAGAACGTTGTGT CTTTGACGGTGGAAGGGCCGCCACCGCCGGATGAGGAGGCGAAAGCCACG CCGGGGGGGCCCGGGATTGGGCGGGCGGCCGGAAGAGGGATTGCGGTGGG CGCGCCTGTGATGGGAGCACCAGTGGGCTTGGCGGGCCCCGTGAGGGGGA TTGGCGGACCAGCGCAGTCGTTGATGACACCTGCGGGAGGTGCGTGAAAG AGGGGGGGTTGGAGAGACATTTGGTGGGGGATGGCAAAGTTTGGTGGTAT CGGTGCGCTCAAACGCGCGAGTATGTGGCTGTGTCTGTGGCTGTGTCTGT GTCTGCGTCTGTCGTCTCTTTCTGCGATTTTTCTTTTTTTGATATATGTC TGCCTCTATATGGTGGTATGTGCACATCCGTGTGGAAGGCCACACCTATA GAGGGGCGAGACTTTCGACGGGACGCCGGGTGCTCACCGGGCACTACGAT GGGGCTCCCATCAGTTCTACTCGCCCACATTCATGCACCGCTTGCCCACG CTTCGTCTTCACGCGCGGGCTCTTTCTAATGCCCTGAATGCGTTAATTTT GATTGGGCCACACAAAGTATTTCCTCGCTGTAATTTATCAGTGATAATTC CATTCGCTCCTCCTTTTAAATCATTCCCTCTTGATGCTCATCCTGTAATC ACCCCGTTGTCCATCCTTTCTTCCCCTTCTCCTATTCAAACCAGGGCCTC AAGGCTTCCCCCCCCGCGGCCCTTCGCCACCAGGGATGGGTATGGGCTAT CCCCCTCCTCGTGGCCCCCCTCCTCCGGGTATGGGGGGTGGCATGCCGCC AGGCTATCCCCCCCAAGGACAGGGGCCGCCTCCCGGTGGCTTTCCCCCTG GCCCTCCTCCTCGCGGGTTTCCGCCTGGGATGCCCCCGAGGCCGTTGCCG CCCAGGTAG
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Coding sequence (CDS) from alignment at chr7:705047..706455-

>NO07G02430.1 ID=NO07G02430.1|Name=NO07G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at chr7:705047..706455- (Nannochloropsis oceanica)
ATGTCGATGTCTAAGAGCAGCAAGATGCTCAACTACATCAATTATCGGAT
GCGGGTCACCATTCAAGACAACCGCACTTTAGTCGGGACCTTTATGGCTT
TCGACCGACACATGAATCTGGTGTTGGGCGACTGTGAAGAGTATCGCAAA
GTCAAGAGCAAAAAAGGCAGTGCTTCCGGCGGCCCCGCGGCGGGGATTGT
TGAGGAGAAAGAGGAGAAACGCATGTTGGGTTTGGTCTTGTTACGAGGAG
AGAACGTTGTGTCTTTGACGGTGGAAGGGCCGCCACCGCCGGATGAGGAG
GCGAAAGCCACGCCGGGGGGGCCCGGGATTGGGCGGGCGGCCGGAAGAGG
GATTGCGGTGGGCGCGCCTGTGATGGGAGCACCAGTGGGCTTGGCGGGCC
CCGTGAGGGGGATTGGCGGACCAGCGCAGTCGTTGATGACACCTGCGGGA
GGGCCTCAAGGCTTCCCCCCCCGCGGCCCTTCGCCACCAGGGATGGGTAT
GGGCTATCCCCCTCCTCGTGGCCCCCCTCCTCCGGGTATGGGGGGTGGCA
TGCCGCCAGGCTATCCCCCCCAAGGACAGGGGCCGCCTCCCGGTGGCTTT
CCCCCTGGCCCTCCTCCTCGCGGGTTTCCGCCTGGGATGCCCCCGAGGCC
GTTGCCGCCCAGGTAG
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Synonyms
Publications