NO07G02410, NO07G02410 (gene) Nannochloropsis oceanica

Overview
NameNO07G02410
Unique NameNO07G02410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2581
Alignment locationchr7:699724..702304 -

Link to JBrowse

Properties
Property NameValue
DescriptionTransducin/WD40 repeat-like superfamily protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:699724..702304 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
BLAST of NO07G02410 vs. NCBI_GenBank
Match: XP_005856405.1 (wd40 repeat domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU19962.1 wd40 repeat domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.0 bits (380), Expect = 1.400e-32
Identity = 71/109 (65.14%), Postives = 87/109 (79.82%), Query Frame = 0
Query:   56 WNHTQQVLACGTDDGAVALMLDSGKMLEVLQE-PCEARNPPTPIISLAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILL 164
            WNHTQQVLACGT++GA+ LML+SGK LEVL+E    AR PP PI SLAWG RSR+L+TTGQ   P LWDLK+KER+M+F GH A +T+VA AP+   VASG+ +GE+LL
Sbjct:    1 WNHTQQVLACGTEEGAITLMLESGKTLEVLKEADVGARVPPMPITSLAWGGRSRYLLTTGQAHSPHLWDLKRKERVMAFGGHEAHVTAVAFAPDSERVASGNHHGEVLL 109          
BLAST of NO07G02410 vs. NCBI_GenBank
Match: PKK73732.1 (WD40 repeat-like protein [Rhizophagus irregularis])

HSP 1 Score: 146.0 bits (367), Expect = 4.400e-31
Identity = 94/366 (25.68%), Postives = 178/366 (48.63%), Query Frame = 0
Query:    1 MPSHLIATATDDVVSTWEL---TREEAQLQHQQIIYE--------SRTPTVQSTMSSGYGTVNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVLQEPCEARNPPTPIISLAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLHFWTARQPLLLAGHRDGVARVWDS-TAGACLMTFKGQHYMSIVAVAGSPASDKLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKNGNCSIYDIRNQHEPLRTTHAFQGLPIRALSVQAQHPRSSGHTTYGSSTSMNGRS 355
            MP++L+ +A+ + +  W+L    +   +++  ++I E        S TP   ST       VN   W+H  Q+LA   +DG + +    G ++E +       N    I +L +  +S++++  G     ++WD K+   I  F+GH +TIT + L  +++ VAS   NG I++H     N   +L +             L    +  L +   ++ LL AG  DG  R+WD+  +   + T++  H+  I  +A SP++  L+++AG D++ +L+DV+ ++ LK +   +P+T++ F  +   I  G   G   IYD+R+ ++ + T +  +  PI+ L  Q +   S    T   + S + R+
Sbjct:    1 MPTNLLVSASTN-IKVWDLMSRDKNSNEIETSKVIPEHLLGAEVASFTPNNTST------AVNVARWSHDNQLLAVAGNDGTLTIHNSQGTLIETILSNDNESNDYADINALRFLNKSQYILFGGSDKIVNVWDRKESTFIEPFKGHRSTITCIDLNLDESIVASSALNGNIIIHNRQKSNTCNNLTV-------------LTKQPINVLQYSYVKRGLLAAGGDDGSLRLWDTGVSTTAIQTYEKAHHSEIKGIAFSPSNQHLLISAGMDKRIVLYDVSKKESLKNIHTDSPLTALAFRADCVTIAAGTLQGKILIYDLRSYNKAMCTLYGHEPHPIQCLQFQEKERVSVRRPTLSRNKSGHVRT 346          
BLAST of NO07G02410 vs. NCBI_GenBank
Match: PKY45998.1 (WD40 repeat-like protein [Rhizophagus irregularis])

HSP 1 Score: 146.0 bits (367), Expect = 4.400e-31
Identity = 94/366 (25.68%), Postives = 178/366 (48.63%), Query Frame = 0
Query:    1 MPSHLIATATDDVVSTWEL---TREEAQLQHQQIIYE--------SRTPTVQSTMSSGYGTVNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVLQEPCEARNPPTPIISLAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLHFWTARQPLLLAGHRDGVARVWDS-TAGACLMTFKGQHYMSIVAVAGSPASDKLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKNGNCSIYDIRNQHEPLRTTHAFQGLPIRALSVQAQHPRSSGHTTYGSSTSMNGRS 355
            MP++L+ +A+ + +  W+L    +   +++  ++I E        S TP   ST       VN   W+H  Q+LA   +DG + +    G ++E +       N    I +L +  +S++++  G     ++WD K+   I  F+GH +TIT + L  +++ VAS   NG I++H     N   +L +             L    +  L +   ++ LL AG  DG  R+WD+  +   + T++  H+  I  +A SP++  L+++AG D++ +L+DV+ ++ LK +   +P+T++ F  +   I  G   G   IYD+R+ ++ + T +  +  PI+ L  Q +   S    T   + S + R+
Sbjct:    1 MPTNLLVSASTN-IKVWDLMSRDKNSNEIETSKVIPEHLLGAEVASFTPNNTST------AVNVARWSHDNQLLAVAGNDGTLTIHNSQGTLIETILSNDNESNDYADINALRFLNKSQYILFGGSDKIVNVWDRKESTFIEPFKGHRSTITCIDLNLDESIVASSALNGNIIIHNRQKSNTCNNLTV-------------LTKQPINVLQYSYVKRGLLAAGGDDGSLRLWDTGVSTTAIQTYEKAHHSEIKGIAFSPSNQHLLISAGMDKRIVLYDVSKKESLKNIHTDSPLTALAFRADCVTIAAGTLQGKILIYDLRSYNKAMCTLYGHEPHPIQCLQFQEKERVSVRRPTLSRNKSGHVRT 346          
BLAST of NO07G02410 vs. NCBI_GenBank
Match: GBC52990.1 (Protein NEDD1 [Rhizophagus irregularis DAOM 181602] >PKC14577.1 WD40 repeat-like protein [Rhizophagus irregularis] >PKY14604.1 WD40 repeat-like protein [Rhizophagus irregularis] >POG73142.1 hypothetical protein GLOIN_2v1589601 [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 143.7 bits (361), Expect = 2.200e-30
Identity = 93/366 (25.41%), Postives = 177/366 (48.36%), Query Frame = 0
Query:    1 MPSHLIATATDDVVSTWEL---TREEAQLQHQQIIYE--------SRTPTVQSTMSSGYGTVNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVLQEPCEARNPPTPIISLAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLHFWTARQPLLLAGHRDGVARVWDS-TAGACLMTFKGQHYMSIVAVAGSPASDKLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKNGNCSIYDIRNQHEPLRTTHAFQGLPIRALSVQAQHPRSSGHTTYGSSTSMNGRS 355
            MP++L+ +A+ + +  W+L    +   +++  ++I E        S TP   ST       VN   W+H  Q+LA   +DG + +    G ++E +       N    I +L +  +S++++  G     ++WD K+   I  F+GH +TIT + L  +++ VAS   NG I++H     N   +L +             L    +  L +   ++ LL AG  DG  R+WD+  +   +  ++  H+  I  +A SP++  L+++AG D++ +L+DV+ ++ LK +   +P+T++ F  +   I  G   G   IYD+R+ ++ + T +  +  PI+ L  Q +   S    T   + S + R+
Sbjct:    1 MPTNLLVSASTN-IKVWDLMSRDKNSNEIETSKVIPEHLLGAEVASFTPNNTST------AVNVARWSHDNQLLAVAGNDGTLTIHNSQGTLIETILSNDNESNDYADINALRFLNKSQYILFGGSDKIVNVWDRKESTFIEPFKGHRSTITCIDLNLDESIVASSALNGNIIIHNRQKSNTCNNLTV-------------LTKQPINVLQYSYVKRGLLAAGGDDGSLRLWDTGVSTTAIQKYEKAHHSEIKGIAFSPSNQHLLISAGMDKRIVLYDVSKKESLKNIHTDSPLTALAFRADCVTIAAGTLQGKILIYDLRSYNKAMCTLYGHEPHPIQCLQFQEKERVSVRRPTLSRNKSGHVRT 346          
BLAST of NO07G02410 vs. NCBI_GenBank
Match: PKC74035.1 (WD40 repeat-like protein [Rhizophagus irregularis])

HSP 1 Score: 143.7 bits (361), Expect = 2.200e-30
Identity = 93/366 (25.41%), Postives = 177/366 (48.36%), Query Frame = 0
Query:    1 MPSHLIATATDDVVSTWEL---TREEAQLQHQQIIYE--------SRTPTVQSTMSSGYGTVNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVLQEPCEARNPPTPIISLAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLHFWTARQPLLLAGHRDGVARVWDS-TAGACLMTFKGQHYMSIVAVAGSPASDKLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKNGNCSIYDIRNQHEPLRTTHAFQGLPIRALSVQAQHPRSSGHTTYGSSTSMNGRS 355
            MP++L+ +A+ + +  W+L    +   +++  ++I E        S TP   ST       VN   W+H  Q+LA   +DG + +    G ++E +       N    I +L +  +S++++  G     ++WD K+   I  F+GH +TIT + L  +++ VAS   NG I++H     N   +L +             L    +  L +   ++ LL AG  DG  R+WD+  +   +  ++  H+  I  +A SP++  L+++AG D++ +L+DV+ ++ LK +   +P+T++ F  +   I  G   G   IYD+R+ ++ + T +  +  PI+ L  Q +   S    T   + S + R+
Sbjct:    1 MPTNLLVSASTN-IKVWDLMSRDKNSNEIETSKVIPEHLLGAEVASFTPNNTST------AVNVARWSHDNQLLAVAGNDGTLTIHNSQGTLIETILSNDNESNDYADINALRFLNKSQYILFGGSDKIVNVWDRKESTFIEPFKGHRSTITCIDLNLDESIVASSALNGNIIIHNRQKSNTCNNLTV-------------LTKQPINVLQYSYVKRGLLAAGGDDGSLRLWDTGVSTTAIQKYEKAHHSEIKGIAFSPSNQHLLISAGMDKRIVLYDVSKKESLKNIHTDSPLTALAFRADCVTIAAGTLQGKILIYDLRSYNKAMCTLYGHEPHPIQCLQFQEKERVSVRRPTLSRNKSGHVRT 346          
BLAST of NO07G02410 vs. NCBI_GenBank
Match: XP_024392843.1 (protein NEDD1-like [Physcomitrella patens] >XP_024392844.1 protein NEDD1-like [Physcomitrella patens] >PNR42168.1 hypothetical protein PHYPA_016997 [Physcomitrella patens])

HSP 1 Score: 140.2 bits (352), Expect = 2.400e-29
Identity = 94/313 (30.03%), Postives = 152/313 (48.56%), Query Frame = 0
Query:   39 TVQSTMSSGYGTVNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVLQEPCEAR--NPPTPIISLAW-GKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLHFWTARQPLLLAGHRDGVARVWDSTAGACLMTFKGQHYMSIVAVAGSPASDKLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKNGNCSIYDIRNQHEPLRTTHAF-QGLPIRALSVQAQHPRSSGHTTYGSS 348
            T Q T S GY  VNC+ WNHT  V+A   +D  ++L + +G+ + V+ +P E    N    I+ + +  K SR+L + G G    +WDL+++  I   +GH  TIT V     D  +AS    G++++H+L S      L      DP  +         +R + +    + LLL    DG   VWD+T+ +  +++  QH      +  SP SDK++V+AG D+K   +D   +K +  V   AP  S+ F  +G+ +  G  +G    YD+R + +P     A+     + +LS Q  +P S   T  G S
Sbjct:   30 TFQYTPSPGY-QVNCVRWNHTNLVVASAGEDCKISLWMKNGQTVGVVPQPGEGTDDNIDESILGICFSSKGSRYLGSGGTGKIVRIWDLQRRRCIKWLKGHTDTITGVMYNCRDEHLASISIKGDLIVHSLASGTRAAELK-----DPHNQV--------LRVMEYSRLSRHLLLTAGDDGTVHVWDTTSRSPKVSWLKQHSAPTTGLCFSPTSDKMIVSAGLDKKLYTYDPGVKKPVFCVPYEAPFASLAFRDDGNTLAAGTNSGRVVFYDLRGRPQPFTILRAYGASEAVTSLSWQRSNPISVKDTRSGES 328          
BLAST of NO07G02410 vs. NCBI_GenBank
Match: XP_024373568.1 (protein NEDD1-like [Physcomitrella patens] >PNR56056.1 hypothetical protein PHYPA_006953 [Physcomitrella patens])

HSP 1 Score: 139.4 bits (350), Expect = 4.200e-29
Identity = 93/311 (29.90%), Postives = 150/311 (48.23%), Query Frame = 0
Query:   39 TVQSTMSSGYGTVNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVLQEPCEAR--NPPTPIISLAW-GKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLHFWTARQPLLLAGHRDGVARVWDSTAGACLMTFKGQHYMSIVAVAGSPASDKLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKNGNCSIYDIRNQHEPLRTTHAFQGL-PIRALSVQAQHPRSSGHTTYG 346
            T Q T S GY  VNC  WNHT  V+A   +D  ++L + +G+ L VL +P      N    I+ + +  K SR+L + G G    +WDL+++  I   +GH  TIT V     D  +AS    G++++H+L S      L      DP  +         +R + +    + LLL    DG   +WD+T+ +  +++  QH      +  SP SDK++V+AG D+K  ++D   RK +  V   AP  S+ F  +G+ +  G  +G    YD+R + +P     A+     + +LS Q  +P +   T  G
Sbjct:   30 TFQYTPSPGY-QVNCARWNHTNLVVASAGEDCKISLWMKNGQSLGVLPQPGGEPDVNIDESILGICFSSKGSRYLGSGGTGKVVRVWDLQRRRCIKWLKGHTDTITGVMYNCRDEHLASISMKGDLIIHSLASGTRAAELK-----DPHNQV--------LRVMEYSRLSRHLLLTAGDDGTVHLWDTTSRSPKLSWLKQHSAPTTGLCFSPTSDKMIVSAGLDKKLYIYDPGVRKPVYCVPYEAPFASLAFRDDGNTLAAGTNSGRVVFYDVRGRPQPFTILRAYSASEAVISLSWQRSNPTTVKDTRPG 326          
BLAST of NO07G02410 vs. NCBI_GenBank
Match: EOA20101.1 (hypothetical protein CARUB_v10000379mg [Capsella rubella])

HSP 1 Score: 136.3 bits (342), Expect = 3.500e-28
Identity = 89/324 (27.47%), Postives = 152/324 (46.91%), Query Frame = 0
Query:   34 ESRTPTVQSTMSSGYGTVNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVL----QEPCEARNPPTPIISLAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLHFWTARQPLLLAGHRDGVARVWDSTAGACLMTFKGQHYMSIVAVAGSPASDKLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKNGNCSIYDIRNQHEPLRTTHAFQGL-PIRALSVQAQHPRSSGHTTYGSSTSMNG 353
            +S  P V S   S    VN + WNHT  V+A   +D  ++L   +G+ L  +    ++  +        IS +  K SR++ + G G    +WDL++K  I   +GH +TIT V    +D  +AS    G++++H L S      L          + P+G +   +R L +  + + LLL    DG   +WD+T  +  M++  QH      V  SP+++K++ + G D+K   +D  +R+    +   AP +S+ F   G ++  G  NG    YD+R + +P+   HAF     + +LS Q   P +     Y S  ++ G
Sbjct:   29 DSGDPCVLSYTPSPGSAVNSVKWNHTNLVVASTGEDKKISLWRKNGQSLGTVPVTGKDGGDGAEECLSAISFS-KKGSRYICSGGTGQLVKIWDLQRKLCIKKLKGHTSTITGVMYNCKDEHLASVSVGGDLIVHNLASGARATEL----------KDPNGQV---LRLLDYSRSSRHLLLTAGDDGTVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIASVGMDKKLYTYDSGSRRSSSCISYEAPFSSLAFGDNGFILAAGTSNGRVVFYDVRGKPQPVTVLHAFSNSEDVTSLSWQTSKPVNVNEKNYSSEMALLG 338          
BLAST of NO07G02410 vs. NCBI_GenBank
Match: XP_023635953.1 (protein NEDD1 isoform X1 [Capsella rubella])

HSP 1 Score: 136.3 bits (342), Expect = 3.500e-28
Identity = 89/324 (27.47%), Postives = 152/324 (46.91%), Query Frame = 0
Query:   34 ESRTPTVQSTMSSGYGTVNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVL----QEPCEARNPPTPIISLAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLHFWTARQPLLLAGHRDGVARVWDSTAGACLMTFKGQHYMSIVAVAGSPASDKLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKNGNCSIYDIRNQHEPLRTTHAFQGL-PIRALSVQAQHPRSSGHTTYGSSTSMNG 353
            +S  P V S   S    VN + WNHT  V+A   +D  ++L   +G+ L  +    ++  +        IS +  K SR++ + G G    +WDL++K  I   +GH +TIT V    +D  +AS    G++++H L S      L          + P+G +   +R L +  + + LLL    DG   +WD+T  +  M++  QH      V  SP+++K++ + G D+K   +D  +R+    +   AP +S+ F   G ++  G  NG    YD+R + +P+   HAF     + +LS Q   P +     Y S  ++ G
Sbjct:   29 DSGDPCVLSYTPSPGSAVNSVKWNHTNLVVASTGEDKKISLWRKNGQSLGTVPVTGKDGGDGAEECLSAISFS-KKGSRYICSGGTGQLVKIWDLQRKLCIKKLKGHTSTITGVMYNCKDEHLASVSVGGDLIVHNLASGARATEL----------KDPNGQV---LRLLDYSRSSRHLLLTAGDDGTVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIASVGMDKKLYTYDSGSRRSSSCISYEAPFSSLAFGDNGFILAAGTSNGRVVFYDVRGKPQPVTVLHAFSNSEDVTSLSWQTSKPVNVNEKNYSSEMALLG 338          
BLAST of NO07G02410 vs. NCBI_GenBank
Match: XP_023635954.1 (protein NEDD1 isoform X2 [Capsella rubella])

HSP 1 Score: 136.3 bits (342), Expect = 3.500e-28
Identity = 89/324 (27.47%), Postives = 152/324 (46.91%), Query Frame = 0
Query:   34 ESRTPTVQSTMSSGYGTVNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVL----QEPCEARNPPTPIISLAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLHFWTARQPLLLAGHRDGVARVWDSTAGACLMTFKGQHYMSIVAVAGSPASDKLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKNGNCSIYDIRNQHEPLRTTHAFQGL-PIRALSVQAQHPRSSGHTTYGSSTSMNG 353
            +S  P V S   S    VN + WNHT  V+A   +D  ++L   +G+ L  +    ++  +        IS +  K SR++ + G G    +WDL++K  I   +GH +TIT V    +D  +AS    G++++H L S      L          + P+G +   +R L +  + + LLL    DG   +WD+T  +  M++  QH      V  SP+++K++ + G D+K   +D  +R+    +   AP +S+ F   G ++  G  NG    YD+R + +P+   HAF     + +LS Q   P +     Y S  ++ G
Sbjct:   29 DSGDPCVLSYTPSPGSAVNSVKWNHTNLVVASTGEDKKISLWRKNGQSLGTVPVTGKDGGDGAEECLSAISFS-KKGSRYICSGGTGQLVKIWDLQRKLCIKKLKGHTSTITGVMYNCKDEHLASVSVGGDLIVHNLASGARATEL----------KDPNGQV---LRLLDYSRSSRHLLLTAGDDGTVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIASVGMDKKLYTYDSGSRRSSSCISYEAPFSSLAFGDNGFILAAGTSNGRVVFYDVRGKPQPVTVLHAFSNSEDVTSLSWQTSKPVNVNEKNYSSEMALLG 338          
The following BLAST results are available for this feature:
BLAST of NO07G02410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856405.11.400e-3265.14wd40 repeat domain-containing protein, partial [Na... [more]
PKK73732.14.400e-3125.68WD40 repeat-like protein [Rhizophagus irregularis][more]
PKY45998.14.400e-3125.68WD40 repeat-like protein [Rhizophagus irregularis][more]
GBC52990.12.200e-3025.41Protein NEDD1 [Rhizophagus irregularis DAOM 181602... [more]
PKC74035.12.200e-3025.41WD40 repeat-like protein [Rhizophagus irregularis][more]
XP_024392843.12.400e-2930.03protein NEDD1-like [Physcomitrella patens] >XP_024... [more]
XP_024373568.14.200e-2929.90protein NEDD1-like [Physcomitrella patens] >PNR560... [more]
EOA20101.13.500e-2827.47hypothetical protein CARUB_v10000379mg [Capsella r... [more]
XP_023635953.13.500e-2827.47protein NEDD1 isoform X1 [Capsella rubella][more]
XP_023635954.13.500e-2827.47protein NEDD1 isoform X2 [Capsella rubella][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000620NSK000620Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02410.1NO07G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669146gene_2565Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g111gene3419Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02410.1NO07G02410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02410 ID=NO07G02410|Name=NO07G02410|organism=Nannochloropsis oceanica|type=gene|length=2581bp
CACAGGCTGAAAGGCATACTTGCCTAATTCGGGCTGCCTCATCGCTGCCT
CGCTGAGAAGCTGCCAGCAGTTAAGCAGTTTGTTCGCCGCCTTCAGCCCG
ATACATACAACGCATCGCCCACAATACACACCGAGGCCCACCCCACGTTT
CCCTGGCAGCATTTTCACTAGCCTTGGAGCATGCCATCTCATCTGATTGC
GACTGCGACGGACGATGTGGTCTCGACGTGGGAGCTGACACGGGAAGAAG
CCCAGCTGCAACACCAGCAAATCATCTACGAGTCGAGGACGCCGACGGTC
CAGAGCACCATGAGCTCAGGCTATGGTACGGTGAACTGTCTAGGCTGGAA
TCATACCCAGCAAGTCCTGGCCTGCGGGACAGATGATGGCGCCGTTGCAC
TCATGCTTGACTCGGGGAAGATGCTGGAAGTGCTTCAAGAGCCTTGCGAA
GCACGGAATCCCCCTACTCCCATTATATCATTGGCCTGGGGGAAGCGCTC
CCGTCACCTTGTCACTACCGGCCAAGGAGATTGTCCCTCATTGTGGGATT
TGAAGAAGAAAGAGCGCATCATGTCTTTTCAAGGACATGGCGCAACCATC
ACCTCGGTTGCCCTTGCCCCAGAGGACGCTTGCGTGGCCTCGGGCGACAA
AAACGGCGAGATCCTACTCCACGCCCTGCATAGCGAGAATCCTGGCATGA
GTCTTCCTTTGGACGTGAAGGGGGATCCTGTGCCTCGAACACCCTCTGGA
TTGATGGCCGCGGGCGTGCGCTCCCTTCACTTTTGGACCGCAAGGCAGCC
CTTGCTCTTGGCGGGGCACCGGGACGGAGTGGCGCGAGTGTGGGACTCCA
CGGCAGGGGCCTGTCTAATGACATTTAAGGGTCAGCATTACATGTCGATC
GTGGCCGTGGCAGGCTCTCCGGCGAGTGATAAATTGATGGTGACGGCGGG
GCAAGATAGAAAAGCGCTTCTGTGGGATGTTACGAATCGCAAGCTGCTGA
AGGAGGTCAAGgtaagttttcaggggagtaagggagggataaaagtagta
agcgacaggtagagtagcaagcgtagagagtaatacgaaatgattgatcg
accctcctcctctttctttcgcgcccgtcttcgtccataccaccacacta
acacaaccgcagGCGTTGGCCCCCATCACCTCCATGTGCTTTAACCCCGA
AGGCGACATGATTATTCTCGGTCTGAAAAATGGCAACTGCTCTATCTACG
ACATCCGTAACCAACACGAGCCCCTTCGCACCACCCATGCCTTCCAAGGC
CTCCCCATTCGAGCTCTATCTGTGCAGGCGCAGCACCCTCGTAGTAGCGG
ACACACCACCTACGGCAGCTCTACCAGCATGAACGGAAGGAGTACGAGCA
GGAGTAGCGGCAGCAGCACAACCACCAAAAATACCGAGCCGGCGTCATCT
CCCACGGCACCCAAGATACCCCTCTCGATCTCCTCGGCTCAGAAACAGAC
AAGTACAAGAACCACCAGCAATACCACCACTATTACTAGCGGCGGCAGCA
GCGGTAGCAGCAGCACAGCAGCTGTGGCTCCCCTTTGCGCAAAAGCCAGT
AGTCCTGTTGCTGTGTCATTCTCATCTATTACCTCTCTCCCCTCGACCTC
GATATCTTCCCCTGCCGCTGCCAGTGCCATCGCCAGGCAAGGGCATACCG
TCCAACCTGCCCCCTCGCCAGTCCGTGAGATCCCTCCTTCCTTCCCTCCA
TCTTCCCTCAACACTGATGAAAACAGCAGCAATAGCAGCAGCGATAGCAG
CAGCATTAGCGCGTTGCCTTCCAGCAGGACAAATAATGTTTCCCTCGCCT
TTTCCTCTATCCCTCCATCAAAAGTCAGCACCAACCCCGCGACGGTAGTA
GCAACCCAGCGGCCTCCCATTTCACAAGAGGAAGTCCAACCCTCTGTACC
TGTCGAGCAACAGCAGGAAAAGATACAAACTCAACCGCAATCACCAGCTG
GTAGCGAAAATTCCGCTTTCAATGCCAACAGCAGCAACACCGCCACCACC
AGCAACGCCTTCCGTTGGCGAGGCAAGCTCAATTTCTCCAGCTCTATCTC
CGCCACAGCTTTCGGCCCGCAAAATCACTCTTCTGCTGCTGCAGCCATCG
CCTCAGCTGCTGCGCGAAGCACAAACAGCGATATCAACACCAAAGAGTTC
GCCCAGCTGGTTGAAAGCAAAGTCAAGGACATGGTGGACGATCTGAGGGA
TGAGCTCGCCAGGGACCTTCGGGGGCTACATCTGGAGTTATTAAAGACCT
CGGAAACTACGCATGCGGCAATGCAAGGACTGGTGCAAACATTCCAGGCA
TTAATGGAGGAGAATAGGGGGTTGAGGAGGGAGATGGAGGAGTTGCAGCA
GCAGATGGAAATGCCTTATTGACTAGAAGAGAGGGAGGGAGGGTCTGTGC
GTAATGCTTATGTGAGAAGATGGAAAAAAGCATGGAAATAGCACTGGTGC
TGTCATGCGATATATTCTTGACAGTCAACGATCAAAGCAAACACAAGAAC
ATGCAAAAATTAGTGCCTACGTCTGATTCCG
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protein sequence of NO07G02410.1

>NO07G02410.1-protein ID=NO07G02410.1-protein|Name=NO07G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MPSHLIATATDDVVSTWELTREEAQLQHQQIIYESRTPTVQSTMSSGYGT
VNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVLQEPCEARNPPTPIIS
LAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDA
CVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLH
FWTARQPLLLAGHRDGVARVWDSTAGACLMTFKGQHYMSIVAVAGSPASD
KLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKN
GNCSIYDIRNQHEPLRTTHAFQGLPIRALSVQAQHPRSSGHTTYGSSTSM
NGRSTSRSSGSSTTTKNTEPASSPTAPKIPLSISSAQKQTSTRTTSNTTT
ITSGGSSGSSSTAAVAPLCAKASSPVAVSFSSITSLPSTSISSPAAASAI
ARQGHTVQPAPSPVREIPPSFPPSSLNTDENSSNSSSDSSSISALPSSRT
NNVSLAFSSIPPSKVSTNPATVVATQRPPISQEEVQPSVPVEQQQEKIQT
QPQSPAGSENSAFNANSSNTATTSNAFRWRGKLNFSSSISATAFGPQNHS
SAAAAIASAAARSTNSDINTKEFAQLVESKVKDMVDDLRDELARDLRGLH
LELLKTSETTHAAMQGLVQTFQALMEENRGLRREMEELQQQMEMPY*
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Synonyms
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