NO07G02410.1, NO07G02410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G02410.1
Unique Name	NO07G02410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2430
Alignment location	chr7:699724..702304 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:699724..702304 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G02410.1 vs.
Match: XP_005856405.1 (wd40 repeat domain-containing protein, partial [Nannochloropsis gaditana CCMP526]; EKU19962.1 wd40 repeat domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.0 bits (380), Expect = 1.400e-32
Identity = 71/109 (65.14%), Postives = 87/109 (79.82%), Query Frame = 0

Query:   56 WNHTQQVLACGTDDGAVALMLDSGKMLEVLQEP-CEARNPPTPIISLAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDACVASGDKNGEILL 164
            WNHTQQVLACGT++GA+ LML+SGK LEVL+E    AR PP PI SLAWG RSR+L+TTGQ   P LWDLK+KER+M+F GH A +T+VA AP+   VASG+ +GE+LL
Sbjct:    1 WNHTQQVLACGTEEGAITLMLESGKTLEVLKEADVGARVPPMPITSLAWGGRSRYLLTTGQAHSPHLWDLKRKERVMAFGGHEAHVTAVAFAPDSERVASGNHHGEVLL 109

The following BLAST results are available for this feature:

BLAST of NO07G02410.1 vs.

BLAST of NO07G02410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005856405.1	1.400e-32	65.14	wd40 repeat domain-containing protein, partial [Na...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G02410	NO07G02410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G02410.1	NO07G02410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G02410.1.cds1	NO07G02410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G02410.1.cds2	NO07G02410.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:699724..702304-
coding sequence from alignment at chr7:699724..702304-

mRNA sequence

>NO07G02410.1 ID=NO07G02410.1|Name=NO07G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2430bp
CACAGGCTGAAAGGCATACTTGCCTAATTCGGGCTGCCTCATCGCTGCCT
CGCTGAGAAGCTGCCAGCAGTTAAGCAGTTTGTTCGCCGCCTTCAGCCCG
ATACATACAACGCATCGCCCACAATACACACCGAGGCCCACCCCACGTTT
CCCTGGCAGCATTTTCACTAGCCTTGGAGCATGCCATCTCATCTGATTGC
GACTGCGACGGACGATGTGGTCTCGACGTGGGAGCTGACACGGGAAGAAG
CCCAGCTGCAACACCAGCAAATCATCTACGAGTCGAGGACGCCGACGGTC
CAGAGCACCATGAGCTCAGGCTATGGTACGGTGAACTGTCTAGGCTGGAA
TCATACCCAGCAAGTCCTGGCCTGCGGGACAGATGATGGCGCCGTTGCAC
TCATGCTTGACTCGGGGAAGATGCTGGAAGTGCTTCAAGAGCCTTGCGAA
GCACGGAATCCCCCTACTCCCATTATATCATTGGCCTGGGGGAAGCGCTC
CCGTCACCTTGTCACTACCGGCCAAGGAGATTGTCCCTCATTGTGGGATT
TGAAGAAGAAAGAGCGCATCATGTCTTTTCAAGGACATGGCGCAACCATC
ACCTCGGTTGCCCTTGCCCCAGAGGACGCTTGCGTGGCCTCGGGCGACAA
AAACGGCGAGATCCTACTCCACGCCCTGCATAGCGAGAATCCTGGCATGA
GTCTTCCTTTGGACGTGAAGGGGGATCCTGTGCCTCGAACACCCTCTGGA
TTGATGGCCGCGGGCGTGCGCTCCCTTCACTTTTGGACCGCAAGGCAGCC
CTTGCTCTTGGCGGGGCACCGGGACGGAGTGGCGCGAGTGTGGGACTCCA
CGGCAGGGGCCTGTCTAATGACATTTAAGGGTCAGCATTACATGTCGATC
GTGGCCGTGGCAGGCTCTCCGGCGAGTGATAAATTGATGGTGACGGCGGG
GCAAGATAGAAAAGCGCTTCTGTGGGATGTTACGAATCGCAAGCTGCTGA
AGGAGGTCAAGGCGTTGGCCCCCATCACCTCCATGTGCTTTAACCCCGAA
GGCGACATGATTATTCTCGGTCTGAAAAATGGCAACTGCTCTATCTACGA
CATCCGTAACCAACACGAGCCCCTTCGCACCACCCATGCCTTCCAAGGCC
TCCCCATTCGAGCTCTATCTGTGCAGGCGCAGCACCCTCGTAGTAGCGGA
CACACCACCTACGGCAGCTCTACCAGCATGAACGGAAGGAGTACGAGCAG
GAGTAGCGGCAGCAGCACAACCACCAAAAATACCGAGCCGGCGTCATCTC
CCACGGCACCCAAGATACCCCTCTCGATCTCCTCGGCTCAGAAACAGACA
AGTACAAGAACCACCAGCAATACCACCACTATTACTAGCGGCGGCAGCAG
CGGTAGCAGCAGCACAGCAGCTGTGGCTCCCCTTTGCGCAAAAGCCAGTA
GTCCTGTTGCTGTGTCATTCTCATCTATTACCTCTCTCCCCTCGACCTCG
ATATCTTCCCCTGCCGCTGCCAGTGCCATCGCCAGGCAAGGGCATACCGT
CCAACCTGCCCCCTCGCCAGTCCGTGAGATCCCTCCTTCCTTCCCTCCAT
CTTCCCTCAACACTGATGAAAACAGCAGCAATAGCAGCAGCGATAGCAGC
AGCATTAGCGCGTTGCCTTCCAGCAGGACAAATAATGTTTCCCTCGCCTT
TTCCTCTATCCCTCCATCAAAAGTCAGCACCAACCCCGCGACGGTAGTAG
CAACCCAGCGGCCTCCCATTTCACAAGAGGAAGTCCAACCCTCTGTACCT
GTCGAGCAACAGCAGGAAAAGATACAAACTCAACCGCAATCACCAGCTGG
TAGCGAAAATTCCGCTTTCAATGCCAACAGCAGCAACACCGCCACCACCA
GCAACGCCTTCCGTTGGCGAGGCAAGCTCAATTTCTCCAGCTCTATCTCC
GCCACAGCTTTCGGCCCGCAAAATCACTCTTCTGCTGCTGCAGCCATCGC
CTCAGCTGCTGCGCGAAGCACAAACAGCGATATCAACACCAAAGAGTTCG
CCCAGCTGGTTGAAAGCAAAGTCAAGGACATGGTGGACGATCTGAGGGAT
GAGCTCGCCAGGGACCTTCGGGGGCTACATCTGGAGTTATTAAAGACCTC
GGAAACTACGCATGCGGCAATGCAAGGACTGGTGCAAACATTCCAGGCAT
TAATGGAGGAGAATAGGGGGTTGAGGAGGGAGATGGAGGAGTTGCAGCAG
CAGATGGAAATGCCTTATTGACTAGAAGAGAGGGAGGGAGGGTCTGTGCG
TAATGCTTATGTGAGAAGATGGAAAAAAGCATGGAAATAGCACTGGTGCT
GTCATGCGATATATTCTTGACAGTCAACGATCAAAGCAAACACAAGAACA
TGCAAAAATTAGTGCCTACGTCTGATTCCG

protein sequence of NO07G02410.1

>NO07G02410.1-protein ID=NO07G02410.1-protein|Name=NO07G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MPSHLIATATDDVVSTWELTREEAQLQHQQIIYESRTPTVQSTMSSGYGT
VNCLGWNHTQQVLACGTDDGAVALMLDSGKMLEVLQEPCEARNPPTPIIS
LAWGKRSRHLVTTGQGDCPSLWDLKKKERIMSFQGHGATITSVALAPEDA
CVASGDKNGEILLHALHSENPGMSLPLDVKGDPVPRTPSGLMAAGVRSLH
FWTARQPLLLAGHRDGVARVWDSTAGACLMTFKGQHYMSIVAVAGSPASD
KLMVTAGQDRKALLWDVTNRKLLKEVKALAPITSMCFNPEGDMIILGLKN
GNCSIYDIRNQHEPLRTTHAFQGLPIRALSVQAQHPRSSGHTTYGSSTSM
NGRSTSRSSGSSTTTKNTEPASSPTAPKIPLSISSAQKQTSTRTTSNTTT
ITSGGSSGSSSTAAVAPLCAKASSPVAVSFSSITSLPSTSISSPAAASAI
ARQGHTVQPAPSPVREIPPSFPPSSLNTDENSSNSSSDSSSISALPSSRT
NNVSLAFSSIPPSKVSTNPATVVATQRPPISQEEVQPSVPVEQQQEKIQT
QPQSPAGSENSAFNANSSNTATTSNAFRWRGKLNFSSSISATAFGPQNHS
SAAAAIASAAARSTNSDINTKEFAQLVESKVKDMVDDLRDELARDLRGLH
LELLKTSETTHAAMQGLVQTFQALMEENRGLRREMEELQQQMEMPY*

mRNA from alignment at chr7:699724..702304-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G02410.1 ID=NO07G02410.1|Name=NO07G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2581bp|location=Sequence derived from alignment at chr7:699724..702304- (Nannochloropsis oceanica)
CACAGGCTGAAAGGCATACTTGCCTAATTCGGGCTGCCTCATCGCTGCCT
CGCTGAGAAGCTGCCAGCAGTTAAGCAGTTTGTTCGCCGCCTTCAGCCCG
ATACATACAACGCATCGCCCACAATACACACCGAGGCCCACCCCACGTTT
CCCTGGCAGCATTTTCACTAGCCTTGGAGCATGCCATCTCATCTGATTGC
GACTGCGACGGACGATGTGGTCTCGACGTGGGAGCTGACACGGGAAGAAG
CCCAGCTGCAACACCAGCAAATCATCTACGAGTCGAGGACGCCGACGGTC
CAGAGCACCATGAGCTCAGGCTATGGTACGGTGAACTGTCTAGGCTGGAA
TCATACCCAGCAAGTCCTGGCCTGCGGGACAGATGATGGCGCCGTTGCAC
TCATGCTTGACTCGGGGAAGATGCTGGAAGTGCTTCAAGAGCCTTGCGAA
GCACGGAATCCCCCTACTCCCATTATATCATTGGCCTGGGGGAAGCGCTC
CCGTCACCTTGTCACTACCGGCCAAGGAGATTGTCCCTCATTGTGGGATT
TGAAGAAGAAAGAGCGCATCATGTCTTTTCAAGGACATGGCGCAACCATC
ACCTCGGTTGCCCTTGCCCCAGAGGACGCTTGCGTGGCCTCGGGCGACAA
AAACGGCGAGATCCTACTCCACGCCCTGCATAGCGAGAATCCTGGCATGA
GTCTTCCTTTGGACGTGAAGGGGGATCCTGTGCCTCGAACACCCTCTGGA
TTGATGGCCGCGGGCGTGCGCTCCCTTCACTTTTGGACCGCAAGGCAGCC
CTTGCTCTTGGCGGGGCACCGGGACGGAGTGGCGCGAGTGTGGGACTCCA
CGGCAGGGGCCTGTCTAATGACATTTAAGGGTCAGCATTACATGTCGATC
GTGGCCGTGGCAGGCTCTCCGGCGAGTGATAAATTGATGGTGACGGCGGG
GCAAGATAGAAAAGCGCTTCTGTGGGATGTTACGAATCGCAAGCTGCTGA
AGGAGGTCAAGGTAAGTTTTCAGGGGAGTAAGGGAGGGATAAAAGTAGTA
AGCGACAGGTAGAGTAGCAAGCGTAGAGAGTAATACGAAATGATTGATCG
ACCCTCCTCCTCTTTCTTTCGCGCCCGTCTTCGTCCATACCACCACACTA
ACACAACCGCAGGCGTTGGCCCCCATCACCTCCATGTGCTTTAACCCCGA
AGGCGACATGATTATTCTCGGTCTGAAAAATGGCAACTGCTCTATCTACG
ACATCCGTAACCAACACGAGCCCCTTCGCACCACCCATGCCTTCCAAGGC
CTCCCCATTCGAGCTCTATCTGTGCAGGCGCAGCACCCTCGTAGTAGCGG
ACACACCACCTACGGCAGCTCTACCAGCATGAACGGAAGGAGTACGAGCA
GGAGTAGCGGCAGCAGCACAACCACCAAAAATACCGAGCCGGCGTCATCT
CCCACGGCACCCAAGATACCCCTCTCGATCTCCTCGGCTCAGAAACAGAC
AAGTACAAGAACCACCAGCAATACCACCACTATTACTAGCGGCGGCAGCA
GCGGTAGCAGCAGCACAGCAGCTGTGGCTCCCCTTTGCGCAAAAGCCAGT
AGTCCTGTTGCTGTGTCATTCTCATCTATTACCTCTCTCCCCTCGACCTC
GATATCTTCCCCTGCCGCTGCCAGTGCCATCGCCAGGCAAGGGCATACCG
TCCAACCTGCCCCCTCGCCAGTCCGTGAGATCCCTCCTTCCTTCCCTCCA
TCTTCCCTCAACACTGATGAAAACAGCAGCAATAGCAGCAGCGATAGCAG
CAGCATTAGCGCGTTGCCTTCCAGCAGGACAAATAATGTTTCCCTCGCCT
TTTCCTCTATCCCTCCATCAAAAGTCAGCACCAACCCCGCGACGGTAGTA
GCAACCCAGCGGCCTCCCATTTCACAAGAGGAAGTCCAACCCTCTGTACC
TGTCGAGCAACAGCAGGAAAAGATACAAACTCAACCGCAATCACCAGCTG
GTAGCGAAAATTCCGCTTTCAATGCCAACAGCAGCAACACCGCCACCACC
AGCAACGCCTTCCGTTGGCGAGGCAAGCTCAATTTCTCCAGCTCTATCTC
CGCCACAGCTTTCGGCCCGCAAAATCACTCTTCTGCTGCTGCAGCCATCG
CCTCAGCTGCTGCGCGAAGCACAAACAGCGATATCAACACCAAAGAGTTC
GCCCAGCTGGTTGAAAGCAAAGTCAAGGACATGGTGGACGATCTGAGGGA
TGAGCTCGCCAGGGACCTTCGGGGGCTACATCTGGAGTTATTAAAGACCT
CGGAAACTACGCATGCGGCAATGCAAGGACTGGTGCAAACATTCCAGGCA
TTAATGGAGGAGAATAGGGGGTTGAGGAGGGAGATGGAGGAGTTGCAGCA
GCAGATGGAAATGCCTTATTGACTAGAAGAGAGGGAGGGAGGGTCTGTGC
GTAATGCTTATGTGAGAAGATGGAAAAAAGCATGGAAATAGCACTGGTGC
TGTCATGCGATATATTCTTGACAGTCAACGATCAAAGCAAACACAAGAAC
ATGCAAAAATTAGTGCCTACGTCTGATTCCG

Coding sequence (CDS) from alignment at chr7:699724..702304-

>NO07G02410.1 ID=NO07G02410.1|Name=NO07G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=2091bp|location=Sequence derived from alignment at chr7:699724..702304- (Nannochloropsis oceanica)
ATGCCATCTCATCTGATTGCGACTGCGACGGACGATGTGGTCTCGACGTG
GGAGCTGACACGGGAAGAAGCCCAGCTGCAACACCAGCAAATCATCTACG
AGTCGAGGACGCCGACGGTCCAGAGCACCATGAGCTCAGGCTATGGTACG
GTGAACTGTCTAGGCTGGAATCATACCCAGCAAGTCCTGGCCTGCGGGAC
AGATGATGGCGCCGTTGCACTCATGCTTGACTCGGGGAAGATGCTGGAAG
TGCTTCAAGAGCCTTGCGAAGCACGGAATCCCCCTACTCCCATTATATCA
TTGGCCTGGGGGAAGCGCTCCCGTCACCTTGTCACTACCGGCCAAGGAGA
TTGTCCCTCATTGTGGGATTTGAAGAAGAAAGAGCGCATCATGTCTTTTC
AAGGACATGGCGCAACCATCACCTCGGTTGCCCTTGCCCCAGAGGACGCT
TGCGTGGCCTCGGGCGACAAAAACGGCGAGATCCTACTCCACGCCCTGCA
TAGCGAGAATCCTGGCATGAGTCTTCCTTTGGACGTGAAGGGGGATCCTG
TGCCTCGAACACCCTCTGGATTGATGGCCGCGGGCGTGCGCTCCCTTCAC
TTTTGGACCGCAAGGCAGCCCTTGCTCTTGGCGGGGCACCGGGACGGAGT
GGCGCGAGTGTGGGACTCCACGGCAGGGGCCTGTCTAATGACATTTAAGG
GTCAGCATTACATGTCGATCGTGGCCGTGGCAGGCTCTCCGGCGAGTGAT
AAATTGATGGTGACGGCGGGGCAAGATAGAAAAGCGCTTCTGTGGGATGT
TACGAATCGCAAGCTGCTGAAGGAGGTCAAGGCGTTGGCCCCCATCACCT
CCATGTGCTTTAACCCCGAAGGCGACATGATTATTCTCGGTCTGAAAAAT
GGCAACTGCTCTATCTACGACATCCGTAACCAACACGAGCCCCTTCGCAC
CACCCATGCCTTCCAAGGCCTCCCCATTCGAGCTCTATCTGTGCAGGCGC
AGCACCCTCGTAGTAGCGGACACACCACCTACGGCAGCTCTACCAGCATG
AACGGAAGGAGTACGAGCAGGAGTAGCGGCAGCAGCACAACCACCAAAAA
TACCGAGCCGGCGTCATCTCCCACGGCACCCAAGATACCCCTCTCGATCT
CCTCGGCTCAGAAACAGACAAGTACAAGAACCACCAGCAATACCACCACT
ATTACTAGCGGCGGCAGCAGCGGTAGCAGCAGCACAGCAGCTGTGGCTCC
CCTTTGCGCAAAAGCCAGTAGTCCTGTTGCTGTGTCATTCTCATCTATTA
CCTCTCTCCCCTCGACCTCGATATCTTCCCCTGCCGCTGCCAGTGCCATC
GCCAGGCAAGGGCATACCGTCCAACCTGCCCCCTCGCCAGTCCGTGAGAT
CCCTCCTTCCTTCCCTCCATCTTCCCTCAACACTGATGAAAACAGCAGCA
ATAGCAGCAGCGATAGCAGCAGCATTAGCGCGTTGCCTTCCAGCAGGACA
AATAATGTTTCCCTCGCCTTTTCCTCTATCCCTCCATCAAAAGTCAGCAC
CAACCCCGCGACGGTAGTAGCAACCCAGCGGCCTCCCATTTCACAAGAGG
AAGTCCAACCCTCTGTACCTGTCGAGCAACAGCAGGAAAAGATACAAACT
CAACCGCAATCACCAGCTGGTAGCGAAAATTCCGCTTTCAATGCCAACAG
CAGCAACACCGCCACCACCAGCAACGCCTTCCGTTGGCGAGGCAAGCTCA
ATTTCTCCAGCTCTATCTCCGCCACAGCTTTCGGCCCGCAAAATCACTCT
TCTGCTGCTGCAGCCATCGCCTCAGCTGCTGCGCGAAGCACAAACAGCGA
TATCAACACCAAAGAGTTCGCCCAGCTGGTTGAAAGCAAAGTCAAGGACA
TGGTGGACGATCTGAGGGATGAGCTCGCCAGGGACCTTCGGGGGCTACAT
CTGGAGTTATTAAAGACCTCGGAAACTACGCATGCGGCAATGCAAGGACT
GGTGCAAACATTCCAGGCATTAATGGAGGAGAATAGGGGGTTGAGGAGGG
AGATGGAGGAGTTGCAGCAGCAGATGGAAATGCCTTATTGA

Synonyms

Publications