NO07G02220, NO07G02220 (gene) Nannochloropsis oceanica

Overview
NameNO07G02220
Unique NameNO07G02220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1937
Alignment locationchr7:664613..666549 +

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Properties
Property NameValue
DescriptionRibosomal protein s16
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:664613..666549 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR000754Ribosomal_S9
Homology
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: EWM27166.1 (ribosomal protein s16 [Nannochloropsis gaditana])

HSP 1 Score: 279.3 bits (713), Expect = 8.200e-72
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 0 
Query:   26 MADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            MA+ELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLR+KILEPVLLLN+ TFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR
Sbjct:    1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: ORX82960.1 (40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 223.0 bits (567), Expect = 7.000e-55
Identity = 105/140 (75.00%), Postives = 124/140 (88.57%), Query Frame = 0 
Query:   30 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            +++VQ FGRKKTATAVAF K G+G+I +NG+PIE VEPE+L++K+ EP+L+L E  FA VDIRVRV+GGGHT+QIYAIRQAI+K IVAFYQK+VDEA K E+KE L+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    1 MQAVQTFGRKKTATAVAFCKSGKGMIRINGSPIELVEPEILKFKVYEPILILGEDKFANVDIRVRVRGGGHTSQIYAIRQAIAKAIVAFYQKFVDEASKKEIKEKLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 140
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: ORX80748.1 (40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73] >ORX81452.1 40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73] >ORX94974.1 40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73] >ORX98698.1 40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 221.5 bits (563), Expect = 2.000e-54
Identity = 105/140 (75.00%), Postives = 123/140 (87.86%), Query Frame = 0 
Query:   30 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            + +VQ FGRKKTATAVAF K G+G+I +NG+PIE VEPE+L++K+ EP+L+L E  FA VDIRVRV+GGGHT+QIYAIRQAI+K IVAFYQK+VDEA K E+KE L+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    1 MEAVQTFGRKKTATAVAFCKRGKGMIRINGSPIELVEPEILKFKVYEPILILGEDKFADVDIRVRVRGGGHTSQIYAIRQAIAKAIVAFYQKFVDEASKKEIKEKLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 140
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: ORX92155.1 (40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 221.5 bits (563), Expect = 2.000e-54
Identity = 104/140 (74.29%), Postives = 123/140 (87.86%), Query Frame = 0 
Query:   30 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            + +VQ FGRKKTATAVAF K G+G+I +NG+PIE VEPE+L++K+ EP+L+L E  FA VDIRVRV+GGGHT+QIYAIRQAI+K IVA+YQK+VDEA K E+KE L+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    1 MEAVQTFGRKKTATAVAFCKSGKGMIRINGSPIELVEPEILKFKVYEPILILGEDKFANVDIRVRVRGGGHTSQIYAIRQAIAKAIVAYYQKFVDEASKKEIKEKLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 140
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_004341583.1 (ribosomal protein S9, putative [Acanthamoeba castellanii str. Neff] >ELR19497.1 ribosomal protein S9, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 219.9 bits (559), Expect = 5.900e-54
Identity = 105/139 (75.54%), Postives = 121/139 (87.05%), Query Frame = 0 
Query:   31 RSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            +SVQ FGRKKTA AVAFVK GRGLI +NG+PIE VEPE+LRYK+ EP+LLL    F+ VDIR+RVKGGGH +Q+YAIRQA++K IVA+YQKYVDEA K E+KE LL YDR+LLVADPR CEPKKFGGP+ARARYQKSYR
Sbjct:   12 KSVQTFGRKKTAVAVAFVKAGRGLIKINGSPIELVEPEVLRYKVFEPILLLGTDKFSGVDIRIRVKGGGHVSQVYAIRQALAKAIVAWYQKYVDEAAKKEIKEVLLTYDRSLLVADPRRCEPKKFGGPAARARYQKSYR 150
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_013783017.1 (40S ribosomal protein S16 isoform X2 [Limulus polyphemus])

HSP 1 Score: 219.5 bits (558), Expect = 7.700e-54
Identity = 107/146 (73.29%), Postives = 123/146 (84.25%), Query Frame = 0 
Query:   24 TVMADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            T+  + + SVQVFGRKKTATAVA+ K G GLI VNG P+E +EP++LRYK+ EPVLLL +  F+ VDIRVRVKGGGH AQIYAIRQAISK +VA+YQKYVDEA K E+K+ L+ YDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    4 TMQKETVPSVQVFGRKKTATAVAYCKRGTGLIKVNGRPLETLEPQILRYKLQEPVLLLGKERFSGVDIRVRVKGGGHIAQIYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 149
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_021383734.1 (40S ribosomal protein S16 [Lonchura striata domestica] >OWK63030.1 40S ribosomal protein S16 [Lonchura striata domestica])

HSP 1 Score: 219.5 bits (558), Expect = 7.700e-54
Identity = 113/158 (71.52%), Postives = 126/158 (79.75%), Query Frame = 0 
Query:   14 LSSTHPPSLFTVMADE--LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            LS+  PP   T M  +  L+SVQVFGRKKTATAVA  K G GLI VNG P+E +EP  L+YK+LEPVLLL +  FA VDIRVRVKGGGH AQIYAIRQAISK +VA+YQKYVDEA K E+K+ L+ YDRTLLVADPR CE KKFGGP ARARYQKSYR
Sbjct:   10 LSAEPPPRTGTAMPAKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 167
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: CBJ30363.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 219.2 bits (557), Expect = 1.000e-53
Identity = 109/140 (77.86%), Postives = 120/140 (85.71%), Query Frame = 0 
Query:   30 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            L SVQVFGRKKTATAVA+ K GRGLI VNG PIE +EP +LR K  EPVLLL  A F+ VDIRVRV+GGG+T+QIYAIRQAI+K IVAFYQKYVDEA K E+K+ L+AYDR LLVADPR CEPKKFGGPSARARYQKSYR
Sbjct:    7 LESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 146
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_011450742.1 (PREDICTED: 40S ribosomal protein S16 [Crassostrea gigas] >EKC25047.1 40S ribosomal protein S16 [Crassostrea gigas])

HSP 1 Score: 219.2 bits (557), Expect = 1.000e-53
Identity = 105/139 (75.54%), Postives = 120/139 (86.33%), Query Frame = 0 
Query:   31 RSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            +SVQVFGRKKTATAVA  K G GLI VNG P+E VEP++LRYK+ EP+LLL +  FA VDIRVRV+GGGH AQ+YAIRQAISK +VA+YQKYVDEA K E+K+ L++YDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:   11 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEQVEPQILRYKLQEPILLLGKEKFAGVDIRVRVRGGGHVAQVYAIRQAISKSLVAYYQKYVDEASKKEIKDVLISYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 149
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_013784824.1 (40S ribosomal protein S16-like [Limulus polyphemus])

HSP 1 Score: 219.2 bits (557), Expect = 1.000e-53
Identity = 106/146 (72.60%), Postives = 123/146 (84.25%), Query Frame = 0 
Query:   24 TVMADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            +V  + + SVQVFGRKKTATAVA+ K G+GLI VNG P+E +EP++LRYK+ EPVLLL +  FA VDIRVRVKGGGH AQIYA RQAISK +VA+YQKYVDE+ K E+K+ L+ YDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    4 SVQKESVPSVQVFGRKKTATAVAYCKRGKGLIKVNGRPLETLEPQILRYKLQEPVLLLGKERFAGVDIRVRVKGGGHVAQIYATRQAISKALVAYYQKYVDESSKKEIKDILIQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 149
The following BLAST results are available for this feature:
BLAST of NO07G02220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27166.18.200e-7297.22ribosomal protein s16 [Nannochloropsis gaditana][more]
ORX82960.17.000e-5575.0040S ribosomal protein S16 [Basidiobolus meristospo... [more]
ORX80748.12.000e-5475.0040S ribosomal protein S16 [Basidiobolus meristospo... [more]
ORX92155.12.000e-5474.2940S ribosomal protein S16 [Basidiobolus meristospo... [more]
XP_004341583.15.900e-5475.54ribosomal protein S9, putative [Acanthamoeba caste... [more]
XP_013783017.17.700e-5473.2940S ribosomal protein S16 isoform X2 [Limulus poly... [more]
XP_021383734.17.700e-5471.5240S ribosomal protein S16 [Lonchura striata domest... [more]
CBJ30363.11.000e-5377.86conserved unknown protein [Ectocarpus siliculosus][more]
XP_011450742.11.000e-5375.54PREDICTED: 40S ribosomal protein S16 [Crassostrea ... [more]
XP_013784824.11.000e-5372.6040S ribosomal protein S16-like [Limulus polyphemus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000646NSK000646Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02220.1NO07G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580736gene_2548Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g88gene3399Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02220.1NO07G02220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02220 ID=NO07G02220|Name=NO07G02220|organism=Nannochloropsis oceanica|type=gene|length=1937bp
GGGGGGGGGGGGGCAGCGCGTGAGGATCAGAGGCGACCACGGAACAAGCG
TGCGATGAATGTACCCGCCCTGAAATGACGGCTGTCCTTGGCGCGAGCGT
AGCTCTACACCCGCCATCCATGGCAACATACAGTTGGGGCATGTAGGGCT
TTGCGTGTTGTTTTGTGCGATACAGTGTTGCATCGCGTAAGGCGTGGTAA
AGAATAAGGCATAAATAACAGTCGTACACAGCCTTTAACCCTCGGCACGC
CGCCCGGTTGTTTCCGCGAGTGGATTTTGTGTGGAGGCGCGTAAGAGGTG
GATGGAGGAGGAAGAGGTGAGCATGGCAGGGAATAGAAATGGCAAGGCTT
TGTGCCGCTCTTCTAGAGTGTGTTTCAAGCTCTTGGATTAGTGTGTAGGG
TTTTTGAAAGGCCGATAGCGTTTCATGCAAGATGGCAAGATGGACGGTGG
GCAGCCGCCCGACGAAGAAGGGAGTGGAGGGCAGGCATTCGTCATGCCGT
GCCTTCCTGTTTCCTTCCTCATATAGCGGATGCCCTCAAATCATAATTCT
GCACGGGCATCACAGAATTTATACGAGTATGCTGCGAGAGCCTGTTGGTG
GAATTGAACAGGATGTATACATTTGCATTATCGCTCGTCATAACCACTTC
TCTTTCTTCCACCCACCCTCCATCCCTTTTTACAGTCATGGCAGACGAGT
TGCGCTCGGTACAGGTCTTTGGCCGCAAGgtacgtgtgttagtcaaattg
tacccaaaccataaatgcccggggagtgtatgggtgatagggaggacacg
gcctggaaagaagagggaaagacgagagcgcggcgtgtggggccagatgc
ggcgcggccacttccaagctgcttgtgcaagtcttgctggcgattgtgtc
atggctaagcactactcatctcttacgttaagggactgattgcctcgtgt
cgcggagggcatgtcatggccatggacggttggaggaatggcgtacaaga
cggcggattttattgtcaactattagcgtctttctgtcctaattggagtt
gcctcgcctcgcgcgtctagtcgggctcaaaagagtcgcagtagatgata
atgtctggattgcgggcacggggcttctctctgtgtcatggcggtggcga
agtaatgaataaataattttctccgtttcgttcctgttctgctgatgcat
ccgtaccccaaacccccttctccctgccctttcccattctgacagAAAAC
GGCGACAGCCGTGGCCTTCGTAAAGGACGGACGTGGACTAATCAACGTTA
ATGGGGCGCCCATCGAGAACGTGGAACCCGAGCTGCTGCGCTACAAGATC
TTGGAGCCCGTGCTGCTCCTGAACGAAGCGACGTTCGCCAAGGTAGACAT
TCGTGTGCGCGTGAAGGGTGGCGGGCACACGGCGCAGATCTACGCTATCC
GACAAGCCATCTCGAAGGGCATCGTGGCTTTCTATCAGAAATACGTAGAC
GAGGCCAAGAAGAACGAGTTGAAGGAGACCCTGCTTGCCTACGACCGCAC
CTTGCTGGTGGCTGACCCCCGACACTGTGAGCCGAAGAAGTTTGGCGGCC
CATCTGCACGAGCTCGTTACCAGAAGTCATATCGTTAGGGTGGCTGGAAG
ATGGAGGAGAGGGGCACGGGAGGGAGAACAGGCTGCAGTCACGGAAGGTG
GCTGGTGCCTGCAGGGCCTTCGACATCATTGGCGCGGGGCGGGCGGTTTC
CTTTTTCTTACATGGGACAGGGTGGTGAAGGTCGGAGGCTCTAGTGGTAT
TGCAGTAGATAGCACCAGTGTTTGTCATTGTAAGACCCGCAGACTGAAGT
GGACCTCGTTGCGGTAGTGACTCACGCACGGAAATAGAAGAAAACAAGAA
GCTTAAAGCTCCTTCGGAAAAATCGAAAAACGAGAGT
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protein sequence of NO07G02220.1

>NO07G02220.1-protein ID=NO07G02220.1-protein|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MYTFALSLVITTSLSSTHPPSLFTVMADELRSVQVFGRKKTATAVAFVKD
GRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGH
TAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHC
EPKKFGGPSARARYQKSYR*
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Synonyms
Publications