NO07G02220.1, NO07G02220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02220.1
Unique NameNO07G02220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1421
Alignment locationchr7:664613..666549 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:664613..666549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G02220.1 vs.
Match: EWM27166.1 (ribosomal protein s16 [Nannochloropsis gaditana])

HSP 1 Score: 279.3 bits (713), Expect = 8.200e-72
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 0
Query:   26 MADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            MA+ELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLR+KILEPVLLLN+ TFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR
Sbjct:    1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144          
The following BLAST results are available for this feature:
BLAST of NO07G02220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27166.18.200e-7297.22ribosomal protein s16 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02220NO07G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02220.1NO07G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02220.1.cds1NO07G02220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02220.1.cds2NO07G02220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02220.1 ID=NO07G02220.1|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp
GGGGGGGGGGGGGCAGCGCGTGAGGATCAGAGGCGACCACGGAACAAGCG
TGCGATGAATGTACCCGCCCTGAAATGACGGCTGTCCTTGGCGCGAGCGT
AGCTCTACACCCGCCATCCATGGCAACATACAGTTGGGGCATGTAGGGCT
TTGCGTGTTGTTTTGTGCGATACAGTGTTGCATCGCGTAAGGCGTGGTAA
AGAATAAGGCATAAATAACAGTCGTACACAGCCTTTAACCCTCGGCACGC
CGCCCGGTTGTTTCCGCGAGTGGATTTTGTGTGGAGGCGCGTAAGAGGTG
GATGGAGGAGGAAGAGGTGAGCATGGCAGGGAATAGAAATGGCAAGGCTT
TGTGCCGCTCTTCTAGAGTGTGTTTCAAGCTCTTGGATTAGTGTGTAGGG
TTTTTGAAAGGCCGATAGCGTTTCATGCAAGATGGCAAGATGGACGGTGG
GCAGCCGCCCGACGAAGAAGGGAGTGGAGGGCAGGCATTCGTCATGCCGT
GCCTTCCTGTTTCCTTCCTCATATAGCGGATGCCCTCAAATCATAATTCT
GCACGGGCATCACAGAATTTATACGAGTATGCTGCGAGAGCCTGTTGGTG
GAATTGAACAGGATGTATACATTTGCATTATCGCTCGTCATAACCACTTC
TCTTTCTTCCACCCACCCTCCATCCCTTTTTACAGTCATGGCAGACGAGT
TGCGCTCGGTACAGGTCTTTGGCCGCAAGAAAACGGCGACAGCCGTGGCC
TTCGTAAAGGACGGACGTGGACTAATCAACGTTAATGGGGCGCCCATCGA
GAACGTGGAACCCGAGCTGCTGCGCTACAAGATCTTGGAGCCCGTGCTGC
TCCTGAACGAAGCGACGTTCGCCAAGGTAGACATTCGTGTGCGCGTGAAG
GGTGGCGGGCACACGGCGCAGATCTACGCTATCCGACAAGCCATCTCGAA
GGGCATCGTGGCTTTCTATCAGAAATACGTAGACGAGGCCAAGAAGAACG
AGTTGAAGGAGACCCTGCTTGCCTACGACCGCACCTTGCTGGTGGCTGAC
CCCCGACACTGTGAGCCGAAGAAGTTTGGCGGCCCATCTGCACGAGCTCG
TTACCAGAAGTCATATCGTTAGGGTGGCTGGAAGATGGAGGAGAGGGGCA
CGGGAGGGAGAACAGGCTGCAGTCACGGAAGGTGGCTGGTGCCTGCAGGG
CCTTCGACATCATTGGCGCGGGGCGGGCGGTTTCCTTTTTCTTACATGGG
ACAGGGTGGTGAAGGTCGGAGGCTCTAGTGGTATTGCAGTAGATAGCACC
AGTGTTTGTCATTGTAAGACCCGCAGACTGAAGTGGACCTCGTTGCGGTA
GTGACTCACGCACGGAAATAGAAGAAAACAAGAAGCTTAAAGCTCCTTCG
GAAAAATCGAAAAACGAGAGT
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protein sequence of NO07G02220.1

>NO07G02220.1-protein ID=NO07G02220.1-protein|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MYTFALSLVITTSLSSTHPPSLFTVMADELRSVQVFGRKKTATAVAFVKD
GRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGH
TAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHC
EPKKFGGPSARARYQKSYR*
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mRNA from alignment at chr7:664613..666549+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02220.1 ID=NO07G02220.1|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1937bp|location=Sequence derived from alignment at chr7:664613..666549+ (Nannochloropsis oceanica)
GGGGGGGGGGGGGCAGCGCGTGAGGATCAGAGGCGACCACGGAACAAGCG TGCGATGAATGTACCCGCCCTGAAATGACGGCTGTCCTTGGCGCGAGCGT AGCTCTACACCCGCCATCCATGGCAACATACAGTTGGGGCATGTAGGGCT TTGCGTGTTGTTTTGTGCGATACAGTGTTGCATCGCGTAAGGCGTGGTAA AGAATAAGGCATAAATAACAGTCGTACACAGCCTTTAACCCTCGGCACGC CGCCCGGTTGTTTCCGCGAGTGGATTTTGTGTGGAGGCGCGTAAGAGGTG GATGGAGGAGGAAGAGGTGAGCATGGCAGGGAATAGAAATGGCAAGGCTT TGTGCCGCTCTTCTAGAGTGTGTTTCAAGCTCTTGGATTAGTGTGTAGGG TTTTTGAAAGGCCGATAGCGTTTCATGCAAGATGGCAAGATGGACGGTGG GCAGCCGCCCGACGAAGAAGGGAGTGGAGGGCAGGCATTCGTCATGCCGT GCCTTCCTGTTTCCTTCCTCATATAGCGGATGCCCTCAAATCATAATTCT GCACGGGCATCACAGAATTTATACGAGTATGCTGCGAGAGCCTGTTGGTG GAATTGAACAGGATGTATACATTTGCATTATCGCTCGTCATAACCACTTC TCTTTCTTCCACCCACCCTCCATCCCTTTTTACAGTCATGGCAGACGAGT TGCGCTCGGTACAGGTCTTTGGCCGCAAGGTACGTGTGTTAGTCAAATTG TACCCAAACCATAAATGCCCGGGGAGTGTATGGGTGATAGGGAGGACACG GCCTGGAAAGAAGAGGGAAAGACGAGAGCGCGGCGTGTGGGGCCAGATGC GGCGCGGCCACTTCCAAGCTGCTTGTGCAAGTCTTGCTGGCGATTGTGTC ATGGCTAAGCACTACTCATCTCTTACGTTAAGGGACTGATTGCCTCGTGT CGCGGAGGGCATGTCATGGCCATGGACGGTTGGAGGAATGGCGTACAAGA CGGCGGATTTTATTGTCAACTATTAGCGTCTTTCTGTCCTAATTGGAGTT GCCTCGCCTCGCGCGTCTAGTCGGGCTCAAAAGAGTCGCAGTAGATGATA ATGTCTGGATTGCGGGCACGGGGCTTCTCTCTGTGTCATGGCGGTGGCGA AGTAATGAATAAATAATTTTCTCCGTTTCGTTCCTGTTCTGCTGATGCAT CCGTACCCCAAACCCCCTTCTCCCTGCCCTTTCCCATTCTGACAGAAAAC GGCGACAGCCGTGGCCTTCGTAAAGGACGGACGTGGACTAATCAACGTTA ATGGGGCGCCCATCGAGAACGTGGAACCCGAGCTGCTGCGCTACAAGATC TTGGAGCCCGTGCTGCTCCTGAACGAAGCGACGTTCGCCAAGGTAGACAT TCGTGTGCGCGTGAAGGGTGGCGGGCACACGGCGCAGATCTACGCTATCC GACAAGCCATCTCGAAGGGCATCGTGGCTTTCTATCAGAAATACGTAGAC GAGGCCAAGAAGAACGAGTTGAAGGAGACCCTGCTTGCCTACGACCGCAC CTTGCTGGTGGCTGACCCCCGACACTGTGAGCCGAAGAAGTTTGGCGGCC CATCTGCACGAGCTCGTTACCAGAAGTCATATCGTTAGGGTGGCTGGAAG ATGGAGGAGAGGGGCACGGGAGGGAGAACAGGCTGCAGTCACGGAAGGTG GCTGGTGCCTGCAGGGCCTTCGACATCATTGGCGCGGGGCGGGCGGTTTC CTTTTTCTTACATGGGACAGGGTGGTGAAGGTCGGAGGCTCTAGTGGTAT TGCAGTAGATAGCACCAGTGTTTGTCATTGTAAGACCCGCAGACTGAAGT GGACCTCGTTGCGGTAGTGACTCACGCACGGAAATAGAAGAAAACAAGAA GCTTAAAGCTCCTTCGGAAAAATCGAAAAACGAGAGT
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Coding sequence (CDS) from alignment at chr7:664613..666549+

>NO07G02220.1 ID=NO07G02220.1|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr7:664613..666549+ (Nannochloropsis oceanica)
ATGTATACATTTGCATTATCGCTCGTCATAACCACTTCTCTTTCTTCCAC
CCACCCTCCATCCCTTTTTACAGTCATGGCAGACGAGTTGCGCTCGGTAC
AGGTCTTTGGCCGCAAGAAAACGGCGACAGCCGTGGCCTTCGTAAAGGAC
GGACGTGGACTAATCAACGTTAATGGGGCGCCCATCGAGAACGTGGAACC
CGAGCTGCTGCGCTACAAGATCTTGGAGCCCGTGCTGCTCCTGAACGAAG
CGACGTTCGCCAAGGTAGACATTCGTGTGCGCGTGAAGGGTGGCGGGCAC
ACGGCGCAGATCTACGCTATCCGACAAGCCATCTCGAAGGGCATCGTGGC
TTTCTATCAGAAATACGTAGACGAGGCCAAGAAGAACGAGTTGAAGGAGA
CCCTGCTTGCCTACGACCGCACCTTGCTGGTGGCTGACCCCCGACACTGT
GAGCCGAAGAAGTTTGGCGGCCCATCTGCACGAGCTCGTTACCAGAAGTC
ATATCGTTAG
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Synonyms
Publications