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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:664613..666549 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02220.1 vs.
Match: EWM27166.1 (ribosomal protein s16 [Nannochloropsis gaditana]) HSP 1 Score: 279.3 bits (713), Expect = 8.200e-72 Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 0
Query: 26 MADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
MA+ELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLR+KILEPVLLLN+ TFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR
Sbjct: 1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02220.1 ID=NO07G02220.1|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp GGGGGGGGGGGGGCAGCGCGTGAGGATCAGAGGCGACCACGGAACAAGCG TGCGATGAATGTACCCGCCCTGAAATGACGGCTGTCCTTGGCGCGAGCGT AGCTCTACACCCGCCATCCATGGCAACATACAGTTGGGGCATGTAGGGCT TTGCGTGTTGTTTTGTGCGATACAGTGTTGCATCGCGTAAGGCGTGGTAA AGAATAAGGCATAAATAACAGTCGTACACAGCCTTTAACCCTCGGCACGC CGCCCGGTTGTTTCCGCGAGTGGATTTTGTGTGGAGGCGCGTAAGAGGTG GATGGAGGAGGAAGAGGTGAGCATGGCAGGGAATAGAAATGGCAAGGCTT TGTGCCGCTCTTCTAGAGTGTGTTTCAAGCTCTTGGATTAGTGTGTAGGG TTTTTGAAAGGCCGATAGCGTTTCATGCAAGATGGCAAGATGGACGGTGG GCAGCCGCCCGACGAAGAAGGGAGTGGAGGGCAGGCATTCGTCATGCCGT GCCTTCCTGTTTCCTTCCTCATATAGCGGATGCCCTCAAATCATAATTCT GCACGGGCATCACAGAATTTATACGAGTATGCTGCGAGAGCCTGTTGGTG GAATTGAACAGGATGTATACATTTGCATTATCGCTCGTCATAACCACTTC TCTTTCTTCCACCCACCCTCCATCCCTTTTTACAGTCATGGCAGACGAGT TGCGCTCGGTACAGGTCTTTGGCCGCAAGAAAACGGCGACAGCCGTGGCC TTCGTAAAGGACGGACGTGGACTAATCAACGTTAATGGGGCGCCCATCGA GAACGTGGAACCCGAGCTGCTGCGCTACAAGATCTTGGAGCCCGTGCTGC TCCTGAACGAAGCGACGTTCGCCAAGGTAGACATTCGTGTGCGCGTGAAG GGTGGCGGGCACACGGCGCAGATCTACGCTATCCGACAAGCCATCTCGAA GGGCATCGTGGCTTTCTATCAGAAATACGTAGACGAGGCCAAGAAGAACG AGTTGAAGGAGACCCTGCTTGCCTACGACCGCACCTTGCTGGTGGCTGAC CCCCGACACTGTGAGCCGAAGAAGTTTGGCGGCCCATCTGCACGAGCTCG TTACCAGAAGTCATATCGTTAGGGTGGCTGGAAGATGGAGGAGAGGGGCA CGGGAGGGAGAACAGGCTGCAGTCACGGAAGGTGGCTGGTGCCTGCAGGG CCTTCGACATCATTGGCGCGGGGCGGGCGGTTTCCTTTTTCTTACATGGG ACAGGGTGGTGAAGGTCGGAGGCTCTAGTGGTATTGCAGTAGATAGCACC AGTGTTTGTCATTGTAAGACCCGCAGACTGAAGTGGACCTCGTTGCGGTA GTGACTCACGCACGGAAATAGAAGAAAACAAGAAGCTTAAAGCTCCTTCG GAAAAATCGAAAAACGAGAGT back to topprotein sequence of NO07G02220.1 >NO07G02220.1-protein ID=NO07G02220.1-protein|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp MYTFALSLVITTSLSSTHPPSLFTVMADELRSVQVFGRKKTATAVAFVKD GRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGH TAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHC EPKKFGGPSARARYQKSYR* back to topmRNA from alignment at chr7:664613..666549+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02220.1 ID=NO07G02220.1|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1937bp|location=Sequence derived from alignment at chr7:664613..666549+ (Nannochloropsis oceanica) GGGGGGGGGGGGGCAGCGCGTGAGGATCAGAGGCGACCACGGAACAAGCG
TGCGATGAATGTACCCGCCCTGAAATGACGGCTGTCCTTGGCGCGAGCGT
AGCTCTACACCCGCCATCCATGGCAACATACAGTTGGGGCATGTAGGGCT
TTGCGTGTTGTTTTGTGCGATACAGTGTTGCATCGCGTAAGGCGTGGTAA
AGAATAAGGCATAAATAACAGTCGTACACAGCCTTTAACCCTCGGCACGC
CGCCCGGTTGTTTCCGCGAGTGGATTTTGTGTGGAGGCGCGTAAGAGGTG
GATGGAGGAGGAAGAGGTGAGCATGGCAGGGAATAGAAATGGCAAGGCTT
TGTGCCGCTCTTCTAGAGTGTGTTTCAAGCTCTTGGATTAGTGTGTAGGG
TTTTTGAAAGGCCGATAGCGTTTCATGCAAGATGGCAAGATGGACGGTGG
GCAGCCGCCCGACGAAGAAGGGAGTGGAGGGCAGGCATTCGTCATGCCGT
GCCTTCCTGTTTCCTTCCTCATATAGCGGATGCCCTCAAATCATAATTCT
GCACGGGCATCACAGAATTTATACGAGTATGCTGCGAGAGCCTGTTGGTG
GAATTGAACAGGATGTATACATTTGCATTATCGCTCGTCATAACCACTTC
TCTTTCTTCCACCCACCCTCCATCCCTTTTTACAGTCATGGCAGACGAGT
TGCGCTCGGTACAGGTCTTTGGCCGCAAGGTACGTGTGTTAGTCAAATTG
TACCCAAACCATAAATGCCCGGGGAGTGTATGGGTGATAGGGAGGACACG
GCCTGGAAAGAAGAGGGAAAGACGAGAGCGCGGCGTGTGGGGCCAGATGC
GGCGCGGCCACTTCCAAGCTGCTTGTGCAAGTCTTGCTGGCGATTGTGTC
ATGGCTAAGCACTACTCATCTCTTACGTTAAGGGACTGATTGCCTCGTGT
CGCGGAGGGCATGTCATGGCCATGGACGGTTGGAGGAATGGCGTACAAGA
CGGCGGATTTTATTGTCAACTATTAGCGTCTTTCTGTCCTAATTGGAGTT
GCCTCGCCTCGCGCGTCTAGTCGGGCTCAAAAGAGTCGCAGTAGATGATA
ATGTCTGGATTGCGGGCACGGGGCTTCTCTCTGTGTCATGGCGGTGGCGA
AGTAATGAATAAATAATTTTCTCCGTTTCGTTCCTGTTCTGCTGATGCAT
CCGTACCCCAAACCCCCTTCTCCCTGCCCTTTCCCATTCTGACAGAAAAC
GGCGACAGCCGTGGCCTTCGTAAAGGACGGACGTGGACTAATCAACGTTA
ATGGGGCGCCCATCGAGAACGTGGAACCCGAGCTGCTGCGCTACAAGATC
TTGGAGCCCGTGCTGCTCCTGAACGAAGCGACGTTCGCCAAGGTAGACAT
TCGTGTGCGCGTGAAGGGTGGCGGGCACACGGCGCAGATCTACGCTATCC
GACAAGCCATCTCGAAGGGCATCGTGGCTTTCTATCAGAAATACGTAGAC
GAGGCCAAGAAGAACGAGTTGAAGGAGACCCTGCTTGCCTACGACCGCAC
CTTGCTGGTGGCTGACCCCCGACACTGTGAGCCGAAGAAGTTTGGCGGCC
CATCTGCACGAGCTCGTTACCAGAAGTCATATCGTTAGGGTGGCTGGAAG
ATGGAGGAGAGGGGCACGGGAGGGAGAACAGGCTGCAGTCACGGAAGGTG
GCTGGTGCCTGCAGGGCCTTCGACATCATTGGCGCGGGGCGGGCGGTTTC
CTTTTTCTTACATGGGACAGGGTGGTGAAGGTCGGAGGCTCTAGTGGTAT
TGCAGTAGATAGCACCAGTGTTTGTCATTGTAAGACCCGCAGACTGAAGT
GGACCTCGTTGCGGTAGTGACTCACGCACGGAAATAGAAGAAAACAAGAA
GCTTAAAGCTCCTTCGGAAAAATCGAAAAACGAGAGT back to topCoding sequence (CDS) from alignment at chr7:664613..666549+ >NO07G02220.1 ID=NO07G02220.1|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr7:664613..666549+ (Nannochloropsis oceanica) ATGTATACATTTGCATTATCGCTCGTCATAACCACTTCTCTTTCTTCCAC CCACCCTCCATCCCTTTTTACAGTCATGGCAGACGAGTTGCGCTCGGTAC AGGTCTTTGGCCGCAAGAAAACGGCGACAGCCGTGGCCTTCGTAAAGGAC GGACGTGGACTAATCAACGTTAATGGGGCGCCCATCGAGAACGTGGAACC CGAGCTGCTGCGCTACAAGATCTTGGAGCCCGTGCTGCTCCTGAACGAAG CGACGTTCGCCAAGGTAGACATTCGTGTGCGCGTGAAGGGTGGCGGGCAC ACGGCGCAGATCTACGCTATCCGACAAGCCATCTCGAAGGGCATCGTGGC TTTCTATCAGAAATACGTAGACGAGGCCAAGAAGAACGAGTTGAAGGAGA CCCTGCTTGCCTACGACCGCACCTTGCTGGTGGCTGACCCCCGACACTGT GAGCCGAAGAAGTTTGGCGGCCCATCTGCACGAGCTCGTTACCAGAAGTC ATATCGTTAG back to top
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