NO07G01880, NO07G01880 (gene) Nannochloropsis oceanica

Overview
NameNO07G01880
Unique NameNO07G01880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1257
Alignment locationchr7:555568..556824 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:555568..556824 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G01880 vs. NCBI_GenBank
Match: EWM27153.1 (hypothetical protein Naga_100010g45 [Nannochloropsis gaditana])

HSP 1 Score: 409.8 bits (1052), Expect = 6.200e-111
Identity = 197/232 (84.91%), Postives = 217/232 (93.53%), Query Frame = 0 
Query:   30 LVRVQAGASSVKGTQPAGNGRKVLAHYIKKLKEGGYPEKAADKQFADYTDRELDALFDLTIDEYDKMVEDSFNEIGTFTLSDDDVKDVIQDALKASEGGEKASPLGIKADYGGAQDVLLMLGLAFERVSSKMSSGGAKGADGTKYLFMTDAQLSKFDKDCDALVTDIESHFANAMKPIDDKIDHWEKEFKVWETDPVKYTDMLGEIPEGLDQEAFLKSFPGYADYADTWSDD 262
            LVR++AGA+S+KG QPAGNGRKVLAHYIKKLKEGGYPEKAADKQF+DYTDRELDALFDLT DEYDKMVEDSFNEIG F LS ++++DVIQ+AL ASEGGEKASPLGIKADYGGAQDVLLMLGLAFERVS+K+S GGA G DGTKYLFMTDAQL+KFD DCDALV+DIE HF  AMKPIDDKIDHWEKEFK WETDPVKYTDMLG+IPEGLDQ+AFLK+FPGY++Y DTWSD+
Sbjct:   15 LVRMEAGAASIKGKQPAGNGRKVLAHYIKKLKEGGYPEKAADKQFSDYTDRELDALFDLTTDEYDKMVEDSFNEIGDFKLSAEEIQDVIQEALVASEGGEKASPLGIKADYGGAQDVLLMLGLAFERVSAKLSQGGATGPDGTKYLFMTDAQLAKFDADCDALVSDIEEHFQAAMKPIDDKIDHWEKEFKTWETDPVKYTDMLGDIPEGLDQDAFLKAFPGYSEYQDTWSDN 246
The following BLAST results are available for this feature:
BLAST of NO07G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27153.16.200e-11184.91hypothetical protein Naga_100010g45 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL095nonsL095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR135ngnoR135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000681NSK000681Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01880.1NO07G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580610gene_2509Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g45gene3362Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01880.1NO07G01880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01880 ID=NO07G01880|Name=NO07G01880|organism=Nannochloropsis oceanica|type=gene|length=1257bp
ATGAGGCTGTATTCCTTCCTCGTGGGGGCTTCTCTCATGGGCTCCGTGGT
GGGCTTCATGCCTAGCATGCGCGTCCAGCAACGCGGCCTTGgtaagagac
acactggggttggagagggtgggtgggatggactcttctcggtctgtagg
gggttgttatcgaccgcatcatagacgggaacggacagtggtttaaaaca
agccagcacaggtggagaggatgaaagggagctggtgtggctgcctcgtt
gggggagctttcgatgtcagtcagccgcggacgaacatgaggacggaggg
ccactcaagtggtctcgatcatgtcgttcagtcgagtagaaaagcagtta
tatgtatggaatcatgcttccagaattcgagtagagcatgcgttagcgga
ggcggggtttgaaagccgggatgaaagcctgctttcctctataagtgtgt
tttattgacgaatctctctttctctcccctctatttctctcccccctctt
tctctctacaaccgcttattttccttcttttttccttccctgtctccaat
ccttcacagTCCGCGTGCAGGCAGGCGCGTCGTCCGTGAAGGGCACGCAG
CCGGCCGGAAATGGTCGCAAGGTCTTGGCGCACTACATCAAGAAGCTGAA
GGAGGGTGGATACCCTGAGAAGGCCGCCGACAAGCAATTTGCCGACTACA
CCGACCGTGAGCTGGACGCGCTGTTCGATCTAACCATCGACGAGTACGAC
AAGATGGTGGAGGATTCTTTCAATGAGATCGGAACCTTCACCCTCTCCGA
TGATGATGTGAAGGACGTGATCCAGGACGCGCTCAAGGCGTCCGAGGGCG
GGGAGAAGGCTTCCCCCCTGGGTATCAAGGCGGACTATGGCGGTGCTCAG
GATGTGCTTCTCATGCTTGGCCTTGCGTTCGAGCGTGTGTCGTCCAAGAT
GAGCTCGGGTGGCGCGAAGGGCGCCGACGGTACTAAGTATCTGTTCATGA
CCGATGCGCAGCTGTCTAAGTTTGACAAGGACTGTGACGCGTTGGTGACG
GACATCGAGAGCCACTTCGCGAATGCCATGAAGCCTATCGACGATAAGAT
CGACCATTGGGAGAAGGAGTTCAAGGTATGGGAGACAGACCCGGTCAAGT
ATACCGACATGCTGGGCGAGATCCCCGAGGGGCTGGACCAGGAGGCCTTC
CTCAAGTCTTTCCCGGGCTATGCTGACTACGCCGATACTTGGAGTGATGA
TAATTGA
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protein sequence of NO07G01880.1

>NO07G01880.1-protein ID=NO07G01880.1-protein|Name=NO07G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MRLYSFLVGASLMGSVVGFMPSMRVQQRGLVRVQAGASSVKGTQPAGNGR
KVLAHYIKKLKEGGYPEKAADKQFADYTDRELDALFDLTIDEYDKMVEDS
FNEIGTFTLSDDDVKDVIQDALKASEGGEKASPLGIKADYGGAQDVLLML
GLAFERVSSKMSSGGAKGADGTKYLFMTDAQLSKFDKDCDALVTDIESHF
ANAMKPIDDKIDHWEKEFKVWETDPVKYTDMLGEIPEGLDQEAFLKSFPG
YADYADTWSDDN*
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Synonyms
Publications