NO07G01880.1, NO07G01880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01880.1
Unique NameNO07G01880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length789
Alignment locationchr7:555568..556824 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:555568..556824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01880.1 vs.
Match: EWM27153.1 (hypothetical protein Naga_100010g45 [Nannochloropsis gaditana])

HSP 1 Score: 409.8 bits (1052), Expect = 6.200e-111
Identity = 197/232 (84.91%), Postives = 217/232 (93.53%), Query Frame = 0 
Query:   30 LVRVQAGASSVKGTQPAGNGRKVLAHYIKKLKEGGYPEKAADKQFADYTDRELDALFDLTIDEYDKMVEDSFNEIGTFTLSDDDVKDVIQDALKASEGGEKASPLGIKADYGGAQDVLLMLGLAFERVSSKMSSGGAKGADGTKYLFMTDAQLSKFDKDCDALVTDIESHFANAMKPIDDKIDHWEKEFKVWETDPVKYTDMLGEIPEGLDQEAFLKSFPGYADYADTWSDD 262
            LVR++AGA+S+KG QPAGNGRKVLAHYIKKLKEGGYPEKAADKQF+DYTDRELDALFDLT DEYDKMVEDSFNEIG F LS ++++DVIQ+AL ASEGGEKASPLGIKADYGGAQDVLLMLGLAFERVS+K+S GGA G DGTKYLFMTDAQL+KFD DCDALV+DIE HF  AMKPIDDKIDHWEKEFK WETDPVKYTDMLG+IPEGLDQ+AFLK+FPGY++Y DTWSD+
Sbjct:   15 LVRMEAGAASIKGKQPAGNGRKVLAHYIKKLKEGGYPEKAADKQFSDYTDRELDALFDLTTDEYDKMVEDSFNEIGDFKLSAEEIQDVIQEALVASEGGEKASPLGIKADYGGAQDVLLMLGLAFERVSAKLSQGGATGPDGTKYLFMTDAQLAKFDADCDALVSDIEEHFQAAMKPIDDKIDHWEKEFKTWETDPVKYTDMLGDIPEGLDQDAFLKAFPGYSEYQDTWSDN 246
The following BLAST results are available for this feature:
BLAST of NO07G01880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27153.16.200e-11184.91hypothetical protein Naga_100010g45 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01880NO07G01880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01880.1NO07G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01880.1.cds1NO07G01880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01880.1.cds2NO07G01880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01880.1 ID=NO07G01880.1|Name=NO07G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=789bp
ATGAGGCTGTATTCCTTCCTCGTGGGGGCTTCTCTCATGGGCTCCGTGGT
GGGCTTCATGCCTAGCATGCGCGTCCAGCAACGCGGCCTTGTCCGCGTGC
AGGCAGGCGCGTCGTCCGTGAAGGGCACGCAGCCGGCCGGAAATGGTCGC
AAGGTCTTGGCGCACTACATCAAGAAGCTGAAGGAGGGTGGATACCCTGA
GAAGGCCGCCGACAAGCAATTTGCCGACTACACCGACCGTGAGCTGGACG
CGCTGTTCGATCTAACCATCGACGAGTACGACAAGATGGTGGAGGATTCT
TTCAATGAGATCGGAACCTTCACCCTCTCCGATGATGATGTGAAGGACGT
GATCCAGGACGCGCTCAAGGCGTCCGAGGGCGGGGAGAAGGCTTCCCCCC
TGGGTATCAAGGCGGACTATGGCGGTGCTCAGGATGTGCTTCTCATGCTT
GGCCTTGCGTTCGAGCGTGTGTCGTCCAAGATGAGCTCGGGTGGCGCGAA
GGGCGCCGACGGTACTAAGTATCTGTTCATGACCGATGCGCAGCTGTCTA
AGTTTGACAAGGACTGTGACGCGTTGGTGACGGACATCGAGAGCCACTTC
GCGAATGCCATGAAGCCTATCGACGATAAGATCGACCATTGGGAGAAGGA
GTTCAAGGTATGGGAGACAGACCCGGTCAAGTATACCGACATGCTGGGCG
AGATCCCCGAGGGGCTGGACCAGGAGGCCTTCCTCAAGTCTTTCCCGGGC
TATGCTGACTACGCCGATACTTGGAGTGATGATAATTGA
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protein sequence of NO07G01880.1

>NO07G01880.1-protein ID=NO07G01880.1-protein|Name=NO07G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MRLYSFLVGASLMGSVVGFMPSMRVQQRGLVRVQAGASSVKGTQPAGNGR
KVLAHYIKKLKEGGYPEKAADKQFADYTDRELDALFDLTIDEYDKMVEDS
FNEIGTFTLSDDDVKDVIQDALKASEGGEKASPLGIKADYGGAQDVLLML
GLAFERVSSKMSSGGAKGADGTKYLFMTDAQLSKFDKDCDALVTDIESHF
ANAMKPIDDKIDHWEKEFKVWETDPVKYTDMLGEIPEGLDQEAFLKSFPG
YADYADTWSDDN*
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mRNA from alignment at chr7:555568..556824+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01880.1 ID=NO07G01880.1|Name=NO07G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp|location=Sequence derived from alignment at chr7:555568..556824+ (Nannochloropsis oceanica)
ATGAGGCTGTATTCCTTCCTCGTGGGGGCTTCTCTCATGGGCTCCGTGGT
GGGCTTCATGCCTAGCATGCGCGTCCAGCAACGCGGCCTTGGTAAGAGAC
ACACTGGGGTTGGAGAGGGTGGGTGGGATGGACTCTTCTCGGTCTGTAGG
GGGTTGTTATCGACCGCATCATAGACGGGAACGGACAGTGGTTTAAAACA
AGCCAGCACAGGTGGAGAGGATGAAAGGGAGCTGGTGTGGCTGCCTCGTT
GGGGGAGCTTTCGATGTCAGTCAGCCGCGGACGAACATGAGGACGGAGGG
CCACTCAAGTGGTCTCGATCATGTCGTTCAGTCGAGTAGAAAAGCAGTTA
TATGTATGGAATCATGCTTCCAGAATTCGAGTAGAGCATGCGTTAGCGGA
GGCGGGGTTTGAAAGCCGGGATGAAAGCCTGCTTTCCTCTATAAGTGTGT
TTTATTGACGAATCTCTCTTTCTCTCCCCTCTATTTCTCTCCCCCCTCTT
TCTCTCTACAACCGCTTATTTTCCTTCTTTTTTCCTTCCCTGTCTCCAAT
CCTTCACAGTCCGCGTGCAGGCAGGCGCGTCGTCCGTGAAGGGCACGCAG
CCGGCCGGAAATGGTCGCAAGGTCTTGGCGCACTACATCAAGAAGCTGAA
GGAGGGTGGATACCCTGAGAAGGCCGCCGACAAGCAATTTGCCGACTACA
CCGACCGTGAGCTGGACGCGCTGTTCGATCTAACCATCGACGAGTACGAC
AAGATGGTGGAGGATTCTTTCAATGAGATCGGAACCTTCACCCTCTCCGA
TGATGATGTGAAGGACGTGATCCAGGACGCGCTCAAGGCGTCCGAGGGCG
GGGAGAAGGCTTCCCCCCTGGGTATCAAGGCGGACTATGGCGGTGCTCAG
GATGTGCTTCTCATGCTTGGCCTTGCGTTCGAGCGTGTGTCGTCCAAGAT
GAGCTCGGGTGGCGCGAAGGGCGCCGACGGTACTAAGTATCTGTTCATGA
CCGATGCGCAGCTGTCTAAGTTTGACAAGGACTGTGACGCGTTGGTGACG
GACATCGAGAGCCACTTCGCGAATGCCATGAAGCCTATCGACGATAAGAT
CGACCATTGGGAGAAGGAGTTCAAGGTATGGGAGACAGACCCGGTCAAGT
ATACCGACATGCTGGGCGAGATCCCCGAGGGGCTGGACCAGGAGGCCTTC
CTCAAGTCTTTCCCGGGCTATGCTGACTACGCCGATACTTGGAGTGATGA
TAATTGA
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Coding sequence (CDS) from alignment at chr7:555568..556824+

>NO07G01880.1 ID=NO07G01880.1|Name=NO07G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr7:555568..556824+ (Nannochloropsis oceanica)
ATGAGGCTGTATTCCTTCCTCGTGGGGGCTTCTCTCATGGGCTCCGTGGT
GGGCTTCATGCCTAGCATGCGCGTCCAGCAACGCGGCCTTGTCCGCGTGC
AGGCAGGCGCGTCGTCCGTGAAGGGCACGCAGCCGGCCGGAAATGGTCGC
AAGGTCTTGGCGCACTACATCAAGAAGCTGAAGGAGGGTGGATACCCTGA
GAAGGCCGCCGACAAGCAATTTGCCGACTACACCGACCGTGAGCTGGACG
CGCTGTTCGATCTAACCATCGACGAGTACGACAAGATGGTGGAGGATTCT
TTCAATGAGATCGGAACCTTCACCCTCTCCGATGATGATGTGAAGGACGT
GATCCAGGACGCGCTCAAGGCGTCCGAGGGCGGGGAGAAGGCTTCCCCCC
TGGGTATCAAGGCGGACTATGGCGGTGCTCAGGATGTGCTTCTCATGCTT
GGCCTTGCGTTCGAGCGTGTGTCGTCCAAGATGAGCTCGGGTGGCGCGAA
GGGCGCCGACGGTACTAAGTATCTGTTCATGACCGATGCGCAGCTGTCTA
AGTTTGACAAGGACTGTGACGCGTTGGTGACGGACATCGAGAGCCACTTC
GCGAATGCCATGAAGCCTATCGACGATAAGATCGACCATTGGGAGAAGGA
GTTCAAGGTATGGGAGACAGACCCGGTCAAGTATACCGACATGCTGGGCG
AGATCCCCGAGGGGCTGGACCAGGAGGCCTTCCTCAAGTCTTTCCCGGGC
TATGCTGACTACGCCGATACTTGGAGTGATGATAATTGA
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Synonyms
Publications