NO07G01390, NO07G01390 (gene) Nannochloropsis oceanica

Overview
NameNO07G01390
Unique NameNO07G01390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length743
Alignment locationchr7:432430..433172 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:432430..433172 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G01390 vs. NCBI_GenBank
Match: EWM27268.1 (hypothetical protein Naga_100038g36 [Nannochloropsis gaditana])

HSP 1 Score: 133.3 bits (334), Expect = 6.100e-28
Identity = 77/138 (55.80%), Postives = 91/138 (65.94%), Query Frame = 0 
Query:    1 MVKLNRMVLTQGFGFILLPVIAVAVTKFYGDSPEETEKKLERMALEDQLKNSRARASVGKGESDVSVMHDFIRKQAINQQADYSVSAFFLFPPFFCVFWSTVPSSKPSFNGFIDTLIKTQDILRSGRGKVKRQKDMDP 139
            MVKLNRMVLTQGFGFILLPV+AVA+TK YG SPEETEK+LERMA+E+Q    R+R++   G+SDV VMHDFIRKQA+NQQADYS                                     IL+SGRGKVKRQ+D++P
Sbjct:    1 MVKLNRMVLTQGFGFILLPVLAVALTKIYGASPEETEKQLERMAVEEQ---HRSRSAGKGGDSDVQVMHDFIRKQAVNQQADYSA------------------------------------ILQSGRGKVKRQRDIEP 99
The following BLAST results are available for this feature:
BLAST of NO07G01390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27268.16.100e-2855.80hypothetical protein Naga_100038g36 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000735NSK000735Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01390.1NO07G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580463gene_2460Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100038g36gene3312Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01390.1NO07G01390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01390 ID=NO07G01390|Name=NO07G01390|organism=Nannochloropsis oceanica|type=gene|length=743bp
AGCAATATGGTCAAGCTAAACCGCATGGTGCTGACCCAAGGTTTTGGCTT
CATCCTTCTGCCGGTAATAGCGGTGGCCGTGACCAAATTTTACGGCGACA
GCCCGGAGGAGACCGAGAAGAAGTTGgtaggtttgtaaggttggaaactc
gggaaggtggcgagcaccatggcggctcatcttccacagaacccctgaag
actgactcctgtacactcccatctcacagGAGCGCATGGCACTCGAGGAC
CAGCTTAAGAACTCCCGGGCGAGGGCAAGTGTGGGGAAAGGGGAGTCCGA
CGTCTCAGTTATGCACGATTTCATACGGAAGCAGGCCATCAACCAACAGG
CCGATTATAGCGTAAGTGCATTTTTCCTGTTTCCCCCTTTCTTTTGCGTG
TTCTGGAGTACTGTGCCATCTTCGAAGCCTTCTTTCAATGGTTTCATCGA
CACACTTATTAAAACACAGGATATATTACGCTCTGGCCGAGGCAAAGTAA
AGAGACAAAAGGACATGGACCCTCCCTCCTCCTGATCATACCCAGTAAGT
GAATAAATGGAAAGCACACAGTACGTGGAAGGCCGAAAGACAGAATGAGG
AAGACTATCGGGAGAACATATGAAGGAGAAAGAAGAGAAAAGAAAAAAGC
TTGTACATGACCCTGAGACAAAAACGAGAATCTGGTGGCGAACACAGTCA
CACACACACACACACACACACACACACACACACACACACACAC
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protein sequence of NO07G01390.1

>NO07G01390.1-protein ID=NO07G01390.1-protein|Name=NO07G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MVKLNRMVLTQGFGFILLPVIAVAVTKFYGDSPEETEKKLERMALEDQLK
NSRARASVGKGESDVSVMHDFIRKQAINQQADYSVSAFFLFPPFFCVFWS
TVPSSKPSFNGFIDTLIKTQDILRSGRGKVKRQKDMDPPSS*
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Synonyms
Publications