NO07G01390.1, NO07G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01390.1
Unique NameNO07G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length640
Alignment locationchr7:432430..433172 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:432430..433172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G01390.1 vs.
Match: EWM27268.1 (hypothetical protein Naga_100038g36 [Nannochloropsis gaditana])

HSP 1 Score: 123.2 bits (308), Expect = 6.300e-25
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 0
Query:    1 MVKLNRMVLTQGFGFILLPVIAVAVTKFYGDSPEETEKKLERMALEDQLKNSRARASVGKGESDVSVMHDFIRKQAINQQADYS 85
            MVKLNRMVLTQGFGFILLPV+AVA+TK YG SPEETEK+LERMA+E+Q    R+R++   G+SDV VMHDFIRKQA+NQQADYS
Sbjct:    1 MVKLNRMVLTQGFGFILLPVLAVALTKIYGASPEETEKQLERMAVEEQ---HRSRSAGKGGDSDVQVMHDFIRKQAVNQQADYS 81          
The following BLAST results are available for this feature:
BLAST of NO07G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27268.16.300e-2576.19hypothetical protein Naga_100038g36 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01390NO07G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01390.1NO07G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01390.1.cds1NO07G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01390.1.cds2NO07G01390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01390.1 ID=NO07G01390.1|Name=NO07G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=640bp
AGCAATATGGTCAAGCTAAACCGCATGGTGCTGACCCAAGGTTTTGGCTT
CATCCTTCTGCCGGTAATAGCGGTGGCCGTGACCAAATTTTACGGCGACA
GCCCGGAGGAGACCGAGAAGAAGTTGGAGCGCATGGCACTCGAGGACCAG
CTTAAGAACTCCCGGGCGAGGGCAAGTGTGGGGAAAGGGGAGTCCGACGT
CTCAGTTATGCACGATTTCATACGGAAGCAGGCCATCAACCAACAGGCCG
ATTATAGCGTAAGTGCATTTTTCCTGTTTCCCCCTTTCTTTTGCGTGTTC
TGGAGTACTGTGCCATCTTCGAAGCCTTCTTTCAATGGTTTCATCGACAC
ACTTATTAAAACACAGGATATATTACGCTCTGGCCGAGGCAAAGTAAAGA
GACAAAAGGACATGGACCCTCCCTCCTCCTGATCATACCCAGTAAGTGAA
TAAATGGAAAGCACACAGTACGTGGAAGGCCGAAAGACAGAATGAGGAAG
ACTATCGGGAGAACATATGAAGGAGAAAGAAGAGAAAAGAAAAAAGCTTG
TACATGACCCTGAGACAAAAACGAGAATCTGGTGGCGAACACAGTCACAC
ACACACACACACACACACACACACACACACACACACACAC
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protein sequence of NO07G01390.1

>NO07G01390.1-protein ID=NO07G01390.1-protein|Name=NO07G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MVKLNRMVLTQGFGFILLPVIAVAVTKFYGDSPEETEKKLERMALEDQLK
NSRARASVGKGESDVSVMHDFIRKQAINQQADYSVSAFFLFPPFFCVFWS
TVPSSKPSFNGFIDTLIKTQDILRSGRGKVKRQKDMDPPSS*
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mRNA from alignment at chr7:432430..433172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01390.1 ID=NO07G01390.1|Name=NO07G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=743bp|location=Sequence derived from alignment at chr7:432430..433172- (Nannochloropsis oceanica)
AGCAATATGGTCAAGCTAAACCGCATGGTGCTGACCCAAGGTTTTGGCTT CATCCTTCTGCCGGTAATAGCGGTGGCCGTGACCAAATTTTACGGCGACA GCCCGGAGGAGACCGAGAAGAAGTTGGTAGGTTTGTAAGGTTGGAAACTC GGGAAGGTGGCGAGCACCATGGCGGCTCATCTTCCACAGAACCCCTGAAG ACTGACTCCTGTACACTCCCATCTCACAGGAGCGCATGGCACTCGAGGAC CAGCTTAAGAACTCCCGGGCGAGGGCAAGTGTGGGGAAAGGGGAGTCCGA CGTCTCAGTTATGCACGATTTCATACGGAAGCAGGCCATCAACCAACAGG CCGATTATAGCGTAAGTGCATTTTTCCTGTTTCCCCCTTTCTTTTGCGTG TTCTGGAGTACTGTGCCATCTTCGAAGCCTTCTTTCAATGGTTTCATCGA CACACTTATTAAAACACAGGATATATTACGCTCTGGCCGAGGCAAAGTAA AGAGACAAAAGGACATGGACCCTCCCTCCTCCTGATCATACCCAGTAAGT GAATAAATGGAAAGCACACAGTACGTGGAAGGCCGAAAGACAGAATGAGG AAGACTATCGGGAGAACATATGAAGGAGAAAGAAGAGAAAAGAAAAAAGC TTGTACATGACCCTGAGACAAAAACGAGAATCTGGTGGCGAACACAGTCA CACACACACACACACACACACACACACACACACACACACACAC
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Coding sequence (CDS) from alignment at chr7:432430..433172-

>NO07G01390.1 ID=NO07G01390.1|Name=NO07G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at chr7:432430..433172- (Nannochloropsis oceanica)
ATGGTCAAGCTAAACCGCATGGTGCTGACCCAAGGTTTTGGCTTCATCCT
TCTGCCGGTAATAGCGGTGGCCGTGACCAAATTTTACGGCGACAGCCCGG
AGGAGACCGAGAAGAAGTTGGAGCGCATGGCACTCGAGGACCAGCTTAAG
AACTCCCGGGCGAGGGCAAGTGTGGGGAAAGGGGAGTCCGACGTCTCAGT
TATGCACGATTTCATACGGAAGCAGGCCATCAACCAACAGGCCGATTATA
GCGTAAGTGCATTTTTCCTGTTTCCCCCTTTCTTTTGCGTGTTCTGGAGT
ACTGTGCCATCTTCGAAGCCTTCTTTCAATGGTTTCATCGACACACTTAT
TAAAACACAGGATATATTACGCTCTGGCCGAGGCAAAGTAAAGAGACAAA
AGGACATGGACCCTCCCTCCTCCTGA
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Synonyms
Publications