NO07G00940, NO07G00940 (gene) Nannochloropsis oceanica

Overview
NameNO07G00940
Unique NameNO07G00940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1080
Alignment locationchr7:304280..305359 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:304280..305359 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G00940 vs. NCBI_GenBank
Match: EWM27289.1 (Post-SET domain protein [Nannochloropsis gaditana])

HSP 1 Score: 132.9 bits (333), Expect = 2.000e-27
Identity = 119/250 (47.60%), Postives = 138/250 (55.20%), Query Frame = 0 
Query:    1 MPHVDIVEENARPSSYGRYGAVELGQDE-------EGATISVLRRQPHQEGR--RGTHGKIGMVIAGLXXXXXXXXXXXXXXXXXXXXXXXXXXRLMSPSP--------ISNTTGNDVAGNSPKASTGWQDMVPKDVL---------------KAN-------XXXXXXXXXXXXXXXXXXXXXXXXXGGPARNCTLDECKTYSGCDPSAFPFVCVGGFAKGGCAKVQSAWEQPGCSDFCTLAGCASQAP 212
            M   D  E N+     G YGAVELG  E       + A+I++ R   H++ R  R   GK+G+V    XXXXXXXXXXX                L +P P        ++ T GNDVAG +PK   GWQDMVPK+VL               +AN       XXXXXXXXXXXXXXXXX        G  ARNC+ +EC  YSGCDP++FPFVCV GFAKGGCAK Q AWE PGC DFCTLA C   AP
Sbjct:    1 MDATDTTEGNSLVGPRGHYGAVELGHHEHLHDEADDTASINIFR---HEQPRNVRTARGKVGIVXXXXXXXXXXXXXXXAPSRTAKMPPP-----LKTPGPEASAEDPFLAATPGNDVAGPAPKDPVGWQDMVPKNVLNKTHGHTDSASHPPAEANHTQAHDXXXXXXXXXXXXXXXXXXSQPMPAKKGDVARNCSQEECTDYSGCDPASFPFVCVEGFAKGGCAKTQKAWENPGCGDFCTLAHCVEHAP 242
The following BLAST results are available for this feature:
BLAST of NO07G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27289.12.000e-2747.60Post-SET domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000787NSK000787Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00940.1NO07G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580263gene_2411Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100080g13gene3269Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00940.1NO07G00940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00940 ID=NO07G00940|Name=NO07G00940|organism=Nannochloropsis oceanica|type=gene|length=1080bp
ATGCCGCACGTCGACATTGTTGAGGAGAATGCTCGGCCGAGCAGCTACGG
GCGTTATGGCGCAGTCGAGCTGGGCCAGGACGAGGAAGGCGCAACCATCA
GCGTTCTTCGTCGCCAGCCGCATCAAGAGGGGAGACGCGGGACGCATGGG
AAGATTGGCATGGTTATTGCTGGTTTGGTGGCGGTGGTCTTGACCGCCGT
TGCTGTTGCTTCGAACACCTCTTCTTCCTCCGCCTCGTCTAATACATCCC
CTGCGCGTCTCATGTCCCCCAGCCCTATATCCAACACAACCGGGAATGAT
GTGGCCGGCAACTCACCCAAAGCCTCCACGGGGTGGCAGGATATGGTGCC
GAAAGACGTCTTAAAAGCCAACTCTTCCTCCACCGCCTCCTCCTCCTCCT
CCTCCTCGTCGTCAAAGGGCAACCATACCACAGCCAGAAGGAAGGTCGGA
GGCCCTGCGCGAAACTGCACGTTGGACGAATGTAAGACCTACAGTGGCTG
TGACCCTTCCGCCTTCCCCTTTGTTTGCGTCGGTGGCTTTGCCAAAGGGG
GTTGTGCCAAGGTACAGAGCGCCTGGGAACAACCCGGCTGCTCTGATTTC
TGTACCCTTGCAGGATGCGCGAGCCAGGCCCCCACTTGCGGACAATGCAG
CCCGGAGGACTGTCACAAGGTTCAGTCTGTCTGTGGTGCTAACCGTCGAT
ATGCTTGCGTGGAGGGACCGAGCGCGGGAGGGTGCTCTACGGAGTCGGCG
TATTGGCCTCAGGGGATTTTGAATGGCATTTGCAAGACTTGCTGTGATCT
GAAGACGTGTGCACCTGCCTTGACGTGTGCGAAATGCACAACAAAACAAT
GTGCATCTATGTCCATGTGTGGTGCCACAGAGCCAGTGCAGTGCACGGGG
GGAGCTGCGGCGGGTGGGTGTGGAACAAAGGACTCGTGGGCAACGGCTGG
TATGGCCGGCTCCTGTACGGCATGCTGTGACACATCTGCCTGTGGTGGAA
GCGACGACAGCGATGATGATAGTGATGATGCGGCTACGGATGCTGATGCT
GATGCAGACTCGACGGAGCCAGCGACGTAA
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protein sequence of NO07G00940.1

>NO07G00940.1-protein ID=NO07G00940.1-protein|Name=NO07G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPHVDIVEENARPSSYGRYGAVELGQDEEGATISVLRRQPHQEGRRGTHG
KIGMVIAGLVAVVLTAVAVASNTSSSSASSNTSPARLMSPSPISNTTGND
VAGNSPKASTGWQDMVPKDVLKANSSSTASSSSSSSSSKGNHTTARRKVG
GPARNCTLDECKTYSGCDPSAFPFVCVGGFAKGGCAKVQSAWEQPGCSDF
CTLAGCASQAPTCGQCSPEDCHKVQSVCGANRRYACVEGPSAGGCSTESA
YWPQGILNGICKTCCDLKTCAPALTCAKCTTKQCASMSMCGATEPVQCTG
GAAAGGCGTKDSWATAGMAGSCTACCDTSACGGSDDSDDDSDDAATDADA
DADSTEPAT*
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Synonyms
Publications