NO07G00940.1, NO07G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00940.1
Unique NameNO07G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1080
Alignment locationchr7:304280..305359 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:304280..305359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00940.1 vs.
Match: EWM27289.1 (Post-SET domain protein [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 1.600e-37
Identity = 113/252 (44.84%), Postives = 142/252 (56.35%), Query Frame = 0 
Query:    1 MPHVDIVEENARPSSYGRYGAVELGQDE-------EGATISVLRRQPHQEGR--RGTHGKIGMVIAGLVAVVLTAVAVASNTSSSSASSNTS--PARLMSPSP--------ISNTTGNDVAGNSPKASTGWQDMVPKDVLKANSSSTASSS-------------------SSSSSSKGNHTTAR---RKVGGPARNCTLDECKTYSGCDPSAFPFVCVGGFAKGGCAKVQSAWEQPGCSDFCTLAGCASQAP 212
            M   D  E N+     G YGAVELG  E       + A+I++ R   H++ R  R   GK+G+V+A ++AVVL A+AV       SA S T+  P  L +P P        ++ T GNDVAG +PK   GWQDMVPK+VL      T S+S                   +SS+ SKGN T+++    K G  ARNC+ +EC  YSGCDP++FPFVCV GFAKGGCAK Q AWE PGC DFCTLA C   AP
Sbjct:    1 MDATDTTEGNSLVGPRGHYGAVELGHHEHLHDEADDTASINIFR---HEQPRNVRTARGKVGIVVAVVIAVVLAALAV-------SAPSRTAKMPPPLKTPGPEASAEDPFLAATPGNDVAGPAPKDPVGWQDMVPKNVLNKTHGHTDSASHPPAEANHTQAHDHHGHNSTSSTHSKGNSTSSQPMPAKKGDVARNCSQEECTDYSGCDPASFPFVCVEGFAKGGCAKTQKAWENPGCGDFCTLAHCVEHAP 242
The following BLAST results are available for this feature:
BLAST of NO07G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27289.11.600e-3744.84Post-SET domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00940NO07G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00940.1NO07G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00940.1.cds1NO07G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00940.1 ID=NO07G00940.1|Name=NO07G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp
ATGCCGCACGTCGACATTGTTGAGGAGAATGCTCGGCCGAGCAGCTACGG
GCGTTATGGCGCAGTCGAGCTGGGCCAGGACGAGGAAGGCGCAACCATCA
GCGTTCTTCGTCGCCAGCCGCATCAAGAGGGGAGACGCGGGACGCATGGG
AAGATTGGCATGGTTATTGCTGGTTTGGTGGCGGTGGTCTTGACCGCCGT
TGCTGTTGCTTCGAACACCTCTTCTTCCTCCGCCTCGTCTAATACATCCC
CTGCGCGTCTCATGTCCCCCAGCCCTATATCCAACACAACCGGGAATGAT
GTGGCCGGCAACTCACCCAAAGCCTCCACGGGGTGGCAGGATATGGTGCC
GAAAGACGTCTTAAAAGCCAACTCTTCCTCCACCGCCTCCTCCTCCTCCT
CCTCCTCGTCGTCAAAGGGCAACCATACCACAGCCAGAAGGAAGGTCGGA
GGCCCTGCGCGAAACTGCACGTTGGACGAATGTAAGACCTACAGTGGCTG
TGACCCTTCCGCCTTCCCCTTTGTTTGCGTCGGTGGCTTTGCCAAAGGGG
GTTGTGCCAAGGTACAGAGCGCCTGGGAACAACCCGGCTGCTCTGATTTC
TGTACCCTTGCAGGATGCGCGAGCCAGGCCCCCACTTGCGGACAATGCAG
CCCGGAGGACTGTCACAAGGTTCAGTCTGTCTGTGGTGCTAACCGTCGAT
ATGCTTGCGTGGAGGGACCGAGCGCGGGAGGGTGCTCTACGGAGTCGGCG
TATTGGCCTCAGGGGATTTTGAATGGCATTTGCAAGACTTGCTGTGATCT
GAAGACGTGTGCACCTGCCTTGACGTGTGCGAAATGCACAACAAAACAAT
GTGCATCTATGTCCATGTGTGGTGCCACAGAGCCAGTGCAGTGCACGGGG
GGAGCTGCGGCGGGTGGGTGTGGAACAAAGGACTCGTGGGCAACGGCTGG
TATGGCCGGCTCCTGTACGGCATGCTGTGACACATCTGCCTGTGGTGGAA
GCGACGACAGCGATGATGATAGTGATGATGCGGCTACGGATGCTGATGCT
GATGCAGACTCGACGGAGCCAGCGACGTAA
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protein sequence of NO07G00940.1

>NO07G00940.1-protein ID=NO07G00940.1-protein|Name=NO07G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPHVDIVEENARPSSYGRYGAVELGQDEEGATISVLRRQPHQEGRRGTHG
KIGMVIAGLVAVVLTAVAVASNTSSSSASSNTSPARLMSPSPISNTTGND
VAGNSPKASTGWQDMVPKDVLKANSSSTASSSSSSSSSKGNHTTARRKVG
GPARNCTLDECKTYSGCDPSAFPFVCVGGFAKGGCAKVQSAWEQPGCSDF
CTLAGCASQAPTCGQCSPEDCHKVQSVCGANRRYACVEGPSAGGCSTESA
YWPQGILNGICKTCCDLKTCAPALTCAKCTTKQCASMSMCGATEPVQCTG
GAAAGGCGTKDSWATAGMAGSCTACCDTSACGGSDDSDDDSDDAATDADA
DADSTEPAT*
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mRNA from alignment at chr7:304280..305359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00940.1 ID=NO07G00940.1|Name=NO07G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp|location=Sequence derived from alignment at chr7:304280..305359- (Nannochloropsis oceanica)
ATGCCGCACGTCGACATTGTTGAGGAGAATGCTCGGCCGAGCAGCTACGG
GCGTTATGGCGCAGTCGAGCTGGGCCAGGACGAGGAAGGCGCAACCATCA
GCGTTCTTCGTCGCCAGCCGCATCAAGAGGGGAGACGCGGGACGCATGGG
AAGATTGGCATGGTTATTGCTGGTTTGGTGGCGGTGGTCTTGACCGCCGT
TGCTGTTGCTTCGAACACCTCTTCTTCCTCCGCCTCGTCTAATACATCCC
CTGCGCGTCTCATGTCCCCCAGCCCTATATCCAACACAACCGGGAATGAT
GTGGCCGGCAACTCACCCAAAGCCTCCACGGGGTGGCAGGATATGGTGCC
GAAAGACGTCTTAAAAGCCAACTCTTCCTCCACCGCCTCCTCCTCCTCCT
CCTCCTCGTCGTCAAAGGGCAACCATACCACAGCCAGAAGGAAGGTCGGA
GGCCCTGCGCGAAACTGCACGTTGGACGAATGTAAGACCTACAGTGGCTG
TGACCCTTCCGCCTTCCCCTTTGTTTGCGTCGGTGGCTTTGCCAAAGGGG
GTTGTGCCAAGGTACAGAGCGCCTGGGAACAACCCGGCTGCTCTGATTTC
TGTACCCTTGCAGGATGCGCGAGCCAGGCCCCCACTTGCGGACAATGCAG
CCCGGAGGACTGTCACAAGGTTCAGTCTGTCTGTGGTGCTAACCGTCGAT
ATGCTTGCGTGGAGGGACCGAGCGCGGGAGGGTGCTCTACGGAGTCGGCG
TATTGGCCTCAGGGGATTTTGAATGGCATTTGCAAGACTTGCTGTGATCT
GAAGACGTGTGCACCTGCCTTGACGTGTGCGAAATGCACAACAAAACAAT
GTGCATCTATGTCCATGTGTGGTGCCACAGAGCCAGTGCAGTGCACGGGG
GGAGCTGCGGCGGGTGGGTGTGGAACAAAGGACTCGTGGGCAACGGCTGG
TATGGCCGGCTCCTGTACGGCATGCTGTGACACATCTGCCTGTGGTGGAA
GCGACGACAGCGATGATGATAGTGATGATGCGGCTACGGATGCTGATGCT
GATGCAGACTCGACGGAGCCAGCGACGTAA
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Coding sequence (CDS) from alignment at chr7:304280..305359-

>NO07G00940.1 ID=NO07G00940.1|Name=NO07G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr7:304280..305359- (Nannochloropsis oceanica)
ATGCCGCACGTCGACATTGTTGAGGAGAATGCTCGGCCGAGCAGCTACGG
GCGTTATGGCGCAGTCGAGCTGGGCCAGGACGAGGAAGGCGCAACCATCA
GCGTTCTTCGTCGCCAGCCGCATCAAGAGGGGAGACGCGGGACGCATGGG
AAGATTGGCATGGTTATTGCTGGTTTGGTGGCGGTGGTCTTGACCGCCGT
TGCTGTTGCTTCGAACACCTCTTCTTCCTCCGCCTCGTCTAATACATCCC
CTGCGCGTCTCATGTCCCCCAGCCCTATATCCAACACAACCGGGAATGAT
GTGGCCGGCAACTCACCCAAAGCCTCCACGGGGTGGCAGGATATGGTGCC
GAAAGACGTCTTAAAAGCCAACTCTTCCTCCACCGCCTCCTCCTCCTCCT
CCTCCTCGTCGTCAAAGGGCAACCATACCACAGCCAGAAGGAAGGTCGGA
GGCCCTGCGCGAAACTGCACGTTGGACGAATGTAAGACCTACAGTGGCTG
TGACCCTTCCGCCTTCCCCTTTGTTTGCGTCGGTGGCTTTGCCAAAGGGG
GTTGTGCCAAGGTACAGAGCGCCTGGGAACAACCCGGCTGCTCTGATTTC
TGTACCCTTGCAGGATGCGCGAGCCAGGCCCCCACTTGCGGACAATGCAG
CCCGGAGGACTGTCACAAGGTTCAGTCTGTCTGTGGTGCTAACCGTCGAT
ATGCTTGCGTGGAGGGACCGAGCGCGGGAGGGTGCTCTACGGAGTCGGCG
TATTGGCCTCAGGGGATTTTGAATGGCATTTGCAAGACTTGCTGTGATCT
GAAGACGTGTGCACCTGCCTTGACGTGTGCGAAATGCACAACAAAACAAT
GTGCATCTATGTCCATGTGTGGTGCCACAGAGCCAGTGCAGTGCACGGGG
GGAGCTGCGGCGGGTGGGTGTGGAACAAAGGACTCGTGGGCAACGGCTGG
TATGGCCGGCTCCTGTACGGCATGCTGTGACACATCTGCCTGTGGTGGAA
GCGACGACAGCGATGATGATAGTGATGATGCGGCTACGGATGCTGATGCT
GATGCAGACTCGACGGAGCCAGCGACGTAA
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Synonyms
Publications