NO07G00750, NO07G00750 (gene) Nannochloropsis oceanica

Overview
NameNO07G00750
Unique NameNO07G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1047
Alignment locationchr7:255467..256513 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:255467..256513 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO07G00750 vs. NCBI_GenBank
Match: EWM27328.1 (hypothetical protein Naga_100393g5 [Nannochloropsis gaditana])

HSP 1 Score: 271.2 bits (692), Expect = 4.600e-69
Identity = 169/349 (48.42%), Postives = 215/349 (61.60%), Query Frame = 0
Query:    1 MVKRCWMLPTAAAVVVSTFLLSSTPAPAEAFLPPV-PAPPAHFAAIPSSISVLSS--RARLGAVQMIRPAGLQSSLLNRFRSKPSASPDRPGVGPPRXXXXXXXXXXXXXXXXXXXVRGSSIAGSMKGSDEAGQMVDKAAGLGQKLSRFTAAVLEEEGDEESA-----RVLKTMKGIPDNFLKSSIPADEENIRGASAVVGALAGFVLGGPLLALIGASWTSYSCTVAQSDAGEAARGTGQWALNLHNFVAKVNRKKSFVQKLSLSLGGLYRRFRKEVAPEASVLDKAEASLQSTLDFTGRISQEFDLPGVVGKAVVKTGELSVVAVKSLVKYNDENKVTDKLWAWVRK 342
            MV RCW LP A A+     LL   P    AFL P+ PA      A     + +S    A+   ++M+ P+  Q+S L R RS+ S   D+P V P                      R S   G +K SD    M        Q+LSRFTAAV+EEE    SA     R LKT+KGIPD FLK  I A++  +R ASAVVGALAGF LGGPLLAL+GA+WTSYSCTV  SDAGEAARGTG+WALN+HNF+AK+NRK  +VQKLS  LGG YRRFRKE AP+A+ LD AE+S+QS L+ T ++ ++ D+ G V KA++K GE S   ++SL++ N+EN+VT++LW  V K
Sbjct:    1 MVNRCWTLPMAMAIFAPVLLLGGIPL-TNAFLHPLRPAKTDSLLAPSQRHAAISGPMYAQRDVMKMVNPSEWQASWLQRIRSRVSPPVDKPSVSPV-PSQKEKKEQTPAKAASTSNSRSSPTVG-VKNSDAKVPMPP------QQLSRFTAAVIEEESAHASAVEAEKRELKTLKGIPDTFLKDDIVANDNTVRQASAVVGALAGFALGGPLLALVGAAWTSYSCTVTPSDAGEAARGTGKWALNVHNFMAKMNRKHGYVQKLSQGLGGWYRRFRKETAPDATFLDVAESSVQSALEATDQLRKDLDVAGPVEKALIKGGEWSAGGLRSLIRLNEENRVTERLWEVVAK 340          
BLAST of NO07G00750 vs. NCBI_GenBank
Match: EWM30517.1 (hypothetical protein Naga_100013g33 [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 7.400e-11
Identity = 54/171 (31.58%), Postives = 85/171 (49.71%), Query Frame = 0
Query:  178 IPADEENIRGASAVVGALAGFVLGGPLLALIGASWTSYSCTVAQSDAGEAARGTGQWALNLHNFVAKVNRKKSFVQKLSLSLGGLYRRFRKEVAPEASVLDKAEASLQSTLDFTGRISQEFDLPGVVGKAVVKTGELSVVAVKSLVKYNDENKVTDKLWAWVRKEVLKEKK 349
            +P + + I  ++A+VG  AG V  GP+L ++    T+Y+     +D GEAARG G+ AL + N++ K+N K     K+S S   L  +  KE   E SV+ K E + +ST      + QE+DL      AV  T + S  A+   ++ N+            +K V K K+
Sbjct:   61 VPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAK-TDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKL-KENDGEDSVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEXXXXXXXXXXXXKKAVNKAKE 229          
BLAST of NO07G00750 vs. NCBI_GenBank
Match: CBJ33389.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.5 bits (171), Expect = 1.200e-8
Identity = 46/167 (27.54%), Postives = 80/167 (47.90%), Query Frame = 0
Query:  177 SIPADEENIRGASAVVGALAGFVLGGPLLALIGASWTSYSCTVAQSDAGEAARGTGQWALNLHNFVAKVNRKKSFVQKLSLSLGGLYRRFRKEVAPEASVLDKAEASLQSTLDFTGRISQEFDLPGVVGKAVVKTGELSVVAVKSLVKYNDENKVTDKLWAWVRKEV 344
            ++  + EN   ++ V+G LAGF +GGP+LA + A   +Y  +  +++AG A RG    A+   NF+  +N K     K    L        K        +   E +++       ++S E+DLP    +A+   GEL+  A+   ++   E KVTDK+   ++K +
Sbjct:   18 TVAVNTENTEFSAGVLGGLAGFFVGGPVLAAVLAVAANYG-SKQENEAGVAVRGVSANAIEAFNFLTTLNSKYDVTGKAGAQLDKAVTEL-KSTGEAGDTIXXVEKTVKDLTSQATKLSSEYDLPAKAKQALGVAGELADTAIVKGIELEKEYKVTDKVKDSIKKSI 182          
BLAST of NO07G00750 vs. NCBI_GenBank
Match: XP_002176613.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51076.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 65.9 bits (159), Expect = 2.900e-7
Identity = 42/170 (24.71%), Postives = 80/170 (47.06%), Query Frame = 0
Query:  179 PADEENIRGASAVVGALAGFVLGGPLLALIGASWTSYSCTVAQSDAGEAARGTGQWALNLHNFVAKVNRKKSFVQKLSLSLGGLYRRFRKEVAPEASVLDKAEASLQSTLDFTGRISQEFDLPGVVGKAVVKTGELSVVAVKSLVKYNDENKVTDKLWAWVRKEVLKEKK 349
            P  EE +   + ++G  AGF++GGP++  I A+  +Y+  +   D  +  +   +  + ++N+ A ++ K   ++K   SL G   + + +   +   + K E +L +T      I+ E+DL G    A+   G+L    +K         K+TDK  A +   V K K+
Sbjct:   68 PIKEETVEFTAGILGGAAGFLVGGPVVGAITAAAANYASKM-DGDVPDIVQAVSKTGIQIYNYFATLDEKYEILKKAQDSLQGTLDKLKAQETVDKEAIAKVEKALSNTKSKIEEINDEYDLVGGGLTALGVVGDLVEKTIKKAGXXXXXXKLTDKAMASINSAVTKAKE 236          
The following BLAST results are available for this feature:
BLAST of NO07G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM27328.14.600e-6948.42hypothetical protein Naga_100393g5 [Nannochloropsi... [more]
EWM30517.17.400e-1131.58hypothetical protein Naga_100013g33 [Nannochlorops... [more]
CBJ33389.11.200e-827.54conserved unknown protein [Ectocarpus siliculosus][more]
XP_002176613.12.900e-724.71predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000834NSK000834Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00750.1NO07G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100393g5gene3229Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00750.1NO07G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00750 ID=NO07G00750|Name=NO07G00750|organism=Nannochloropsis oceanica|type=gene|length=1047bp
ATGGTGAAGCGGTGCTGGATGCTGCCTACGGCAGCGGCTGTCGTCGTTTC
TACCTTCTTGCTGAGCAGCACTCCCGCTCCCGCGGAAGCATTTCTCCCGC
CCGTTCCGGCCCCCCCCGCTCATTTTGCTGCCATTCCCTCTTCTATCTCC
GTCCTCTCTTCCCGTGCTCGGCTTGGGGCGGTGCAAATGATCAGACCGGC
GGGTTTGCAATCGTCGTTGTTGAATCGGTTTCGGTCGAAGCCTAGTGCGT
CGCCCGACAGGCCCGGTGTCGGACCACCACGGAACAACAAGGATGAGGAC
GAGAAGACCAAGAAGCAAGCGGCAGCGACAAGTAGCAGCGTTCGCGGGTC
GAGCATTGCAGGCAGTATGAAAGGCAGTGACGAAGCCGGTCAAATGGTTG
ATAAGGCTGCAGGGCTGGGGCAAAAGCTAAGTCGGTTCACTGCGGCGGTC
CTTGAGGAAGAGGGTGACGAGGAGAGCGCGAGGGTTTTGAAAACTATGAA
GGGCATCCCAGACAATTTTCTCAAGAGCTCCATCCCTGCTGACGAGGAAA
ATATACGAGGAGCTTCGGCTGTTGTGGGTGCACTCGCGGGCTTTGTCTTG
GGTGGGCCTCTCTTGGCCCTGATAGGGGCGTCGTGGACGAGTTATTCCTG
CACGGTCGCTCAGTCAGACGCGGGAGAAGCAGCGCGAGGCACAGGGCAAT
GGGCGCTAAACTTGCACAATTTCGTGGCGAAGGTCAATCGGAAAAAATCC
TTCGTCCAGAAGTTGTCTTTGTCATTGGGTGGATTGTACCGGCGGTTTAG
AAAGGAGGTGGCTCCCGAGGCAAGTGTACTTGACAAGGCTGAGGCTTCCT
TGCAATCGACCCTGGATTTCACGGGAAGGATCAGCCAGGAATTTGATTTG
CCAGGCGTGGTGGGAAAGGCTGTCGTGAAGACGGGAGAGTTGAGTGTGGT
GGCGGTGAAGAGCTTAGTGAAATACAATGACGAGAATAAGGTGACGGATA
AGTTGTGGGCCTGGGTGCGGAAGGAGGTGTTGAAGGAGAAAAAGTAG
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protein sequence of NO07G00750.1

>NO07G00750.1-protein ID=NO07G00750.1-protein|Name=NO07G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MVKRCWMLPTAAAVVVSTFLLSSTPAPAEAFLPPVPAPPAHFAAIPSSIS
VLSSRARLGAVQMIRPAGLQSSLLNRFRSKPSASPDRPGVGPPRNNKDED
EKTKKQAAATSSSVRGSSIAGSMKGSDEAGQMVDKAAGLGQKLSRFTAAV
LEEEGDEESARVLKTMKGIPDNFLKSSIPADEENIRGASAVVGALAGFVL
GGPLLALIGASWTSYSCTVAQSDAGEAARGTGQWALNLHNFVAKVNRKKS
FVQKLSLSLGGLYRRFRKEVAPEASVLDKAEASLQSTLDFTGRISQEFDL
PGVVGKAVVKTGELSVVAVKSLVKYNDENKVTDKLWAWVRKEVLKEKK*
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Synonyms
Publications