NO07G00340, NO07G00340 (gene) Nannochloropsis oceanica

Overview
NameNO07G00340
Unique NameNO07G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr7:136127..136903 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:136127..136903 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO07G00340 vs. NCBI_GenBank
Match: EWM27350.1 (protein of unknown function DUF218 [Nannochloropsis gaditana])

HSP 1 Score: 149.4 bits (376), Expect = 1.500e-32
Identity = 89/185 (48.11%), Postives = 105/185 (56.76%), Query Frame = 0
Query:   76 FHADVILVLGGDRHRELTAVRLFHEKAIVSALALPHHQH--KSRIHIDYTRTPLILSSGTIGPDDL-PSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFGWEWRGVVAWVHPTRKAEE 258
            F AD +LVLGGDRHRELTAVRLF    + S    P   H     IH+DY + PL +SSG + PD+L P+ L P   I  DRRA+CTLTNFTSL  +F+A  +R VLV+TS SHL RAL VGS+V                              RD +RAW WV  GWE R VV W HP RK E+
Sbjct:   70 FRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIV----XXXXXXXXXXXXXXXXXXXXXXXXXXRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ 250          
BLAST of NO07G00340 vs. NCBI_GenBank
Match: CEM28362.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 86.7 bits (213), Expect = 1.200e-13
Identity = 64/180 (35.56%), Postives = 94/180 (52.22%), Query Frame = 0
Query:   78 ADVILVLGGDRHRELTAVRLFHE-KAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRG--RDYVRAWVWVVFGWEWRGVVAWVHPTRK 255
            +D +LVLGGDR RE  A+ L  +   ++S  A+                 +I+SSG +  +D+ +    +  + FDRRA+ T+TNF +    F+   VR+V+V TS  H  R +AV  +VLG+  + V  L I  S    Q E G  R    RD +RAW+WV  G +   V  W+HPTR+
Sbjct:   73 SDALLVLGGDRAREAAALTLLKDGHLLLSPSAM-----------------VIISSGALSHEDITALGLSTDHVIFDRRAVDTVTNFVTTGPLFREHRVRQVMVATSDYHARRGIAVARIVLGSFRMRVVPLVIASSEKMRQ-ERGETRGRVIRDCLRAWLWVWAGLDLSSVTVWLHPTRQ 234          
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_017296674.1 (YdcF family protein [Nodosilinea nodulosa])

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12
Identity = 63/168 (37.50%), Postives = 86/168 (51.19%), Query Frame = 0
Query:   77 HADVILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPD-DLPSYLPPSLC---ITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFGW 241
            H D ILVLGG  HRE TA R          LA+ H Q    +H        I SS  +GPD   P +    +    IT D +A+ T+TNFT+L  +F+ Q V  + ++TS  H+PRA A+ ++VLG+  I    +    S    Q  E   R GRD VR+W+W+  GW
Sbjct:   51 HPDGILVLGGQPHREATAAR----------LAMLHPQ----LH--------IWSSSGLGPDMAYPIFDALRVSRDRITLDYQAVDTVTNFTTLVKTFRQQHVHHLYLVTSDYHMPRARAIATIVLGSHHIAFTPVVAPSS----QATESPFRIGRDMVRSWIWLTTGW 192          
BLAST of NO07G00340 vs. NCBI_GenBank
Match: ABM79388.1 (Conserved hypothetical protein [Prochlorococcus marinus str. MIT 9303])

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-10
Identity = 60/160 (37.50%), Postives = 84/160 (52.50%), Query Frame = 0
Query:   80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240
            +ILVLGGD  RE   +RL  +  +   ++          +++Y +  L+   G          +PPS  +  D RA  TL NFTSL    Q +G++ VL++TS  HLPR++AVG VV  AG+  +R  GI  S      EEG  +R  D+VRAW WV  G
Sbjct:   40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELQLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGVRKRISDWVRAWAWVATG 178          
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_063396732.1 (YdcF family protein [Prochlorococcus sp. MIT 1306] >KZR61464.1 hypothetical protein PMIT1306_02245 [Prochlorococcus sp. MIT 1306])

HSP 1 Score: 75.9 bits (185), Expect = 2.100e-10
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 0
Query:   80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240
            +ILVLGGD  RE   +RL  +  +   ++          +++Y +  L+   G          +PPS  +  D RA  TL+NFTSL    + +G++ VL++TS  HLPR++AVG VV  AG+  +R  GI  S      EEG  +R  D+VRAW WV  G
Sbjct:   40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLSNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGVRKRISDWVRAWAWVATG 178          
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_036911516.1 (MULTISPECIES: YdcF family protein [Prochlorococcus])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0
Query:   80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240
            +ILVLGGD  RE   +RL  +  +   ++          +++Y +  L+   G          +PPS  +  D RA  TL NFTSL    + +G++ VL++TS  HLPR++AVG VV  AG+  +R  GI  S      EEG  +R  D+VRAW WV  G
Sbjct:   40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGLRKRISDWVRAWAWVATG 178          
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_063398784.1 (YdcF family protein [Prochlorococcus sp. MIT 1303] >KZR62205.1 hypothetical protein PMIT1303_02408 [Prochlorococcus sp. MIT 1303])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0
Query:   80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240
            +ILVLGGD  RE   +RL  +  +   ++          +++Y +  L+   G          +PPS  +  D RA  TL NFTSL    + +G++ VL++TS  HLPR++AVG VV  AG+  +R  GI  S      EEG  +R  D+VRAW WV  G
Sbjct:   40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGLRKRISDWVRAWAWVATG 178          
BLAST of NO07G00340 vs. NCBI_GenBank
Match: KZR68618.1 (hypothetical protein PMIT1313_02242 [Prochlorococcus marinus str. MIT 1313] >KZR71145.1 hypothetical protein PMIT1318_02287 [Prochlorococcus marinus str. MIT 1318])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0
Query:   80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240
            +ILVLGGD  RE   +RL  +  +   ++          +++Y +  L+   G          +PPS  +  D RA  TL NFTSL    + +G++ VL++TS  HLPR++AVG VV  AG+  +R  GI  S      EEG  +R  D+VRAW WV  G
Sbjct:   40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGLRKRISDWVRAWAWVATG 178          
BLAST of NO07G00340 vs. NCBI_GenBank
Match: OUW89206.1 (hypothetical protein CBD83_05940 [Prochlorococcus sp. TMED223])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0
Query:   80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240
            +ILVLGGD  RE   +RL  +  +   ++          +++Y +  L+   G          +PPS  +  D RA  TL NFTSL    + +G++ VL++TS  HLPR++AVG VV  AG+  +R  GI  S      EEG  +R  D+VRAW WV  G
Sbjct:   40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGLRKRISDWVRAWAWVATG 178          
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_038552761.1 (YdcF family protein [Synechococcus sp. KORDI-52] >AII48348.1 hypothetical protein KR52_04145 [Synechococcus sp. KORDI-52])

HSP 1 Score: 73.9 bits (180), Expect = 8.000e-10
Identity = 60/167 (35.93%), Postives = 83/167 (49.70%), Query Frame = 0
Query:   80 VILVLGGDRHRELTAVRLFHE---KAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFGWEWR 244
            ++LVLGGD  RE    RL  +     +VS  + P +               +LS     PD           +T D RA  TL+NFTS+    QA GVR VL++TS  HLPR++AVG VV G+  I + G+ +       Q  EG L++  D+VRA  WV+ G + R
Sbjct:   39 LVLVLGGDVDRERMGARLARQLDLPLLVSGGSNPEY------------AEWMLSEERFNPDR----------VTLDYRARDTLSNFTSVVDELQADGVRHVLLVTSEDHLPRSMAVGQVVAGSRGIQLTGVPVACREDCTQ--EGPLKQWSDWVRAVAWVMTGRDLR 181          
The following BLAST results are available for this feature:
BLAST of NO07G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27350.11.500e-3248.11protein of unknown function DUF218 [Nannochloropsi... [more]
CEM28362.11.200e-1335.56unnamed protein product [Vitrella brassicaformis C... [more]
WP_017296674.11.700e-1237.50YdcF family protein [Nodosilinea nodulosa][more]
ABM79388.11.600e-1037.50Conserved hypothetical protein [Prochlorococcus ma... [more]
WP_063396732.12.100e-1036.88YdcF family protein [Prochlorococcus sp. MIT 1306]... [more]
WP_036911516.13.600e-1036.88MULTISPECIES: YdcF family protein [Prochlorococcus... [more]
WP_063398784.13.600e-1036.88YdcF family protein [Prochlorococcus sp. MIT 1303]... [more]
KZR68618.13.600e-1036.88hypothetical protein PMIT1313_02242 [Prochlorococc... [more]
OUW89206.13.600e-1036.88hypothetical protein CBD83_05940 [Prochlorococcus ... [more]
WP_038552761.18.000e-1035.93YdcF family protein [Synechococcus sp. KORDI-52] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL102nonsL102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000867NSK000867Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00340.1NO07G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326500gene_2341Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100394g1gene3206Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00340.1NO07G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00340 ID=NO07G00340|Name=NO07G00340|organism=Nannochloropsis oceanica|type=gene|length=777bp
ATGATGATCTCCGCGTTTGATCTTGCGGCTGGTTGGTCCATGGCACGCAC
TAGTGCAGCGCTTGCCATTGTCTCCCTTTTGTGCCTCTCTTCTTCTTCCA
TGGCCGTGGGCCGCCGTCTCCGCACCCGGATATGCACCACTTTGCAGCGA
CTTCGCCGTAGACAAAGGCGTTCATGGCAAGACATAAAGCAGGACAAGGA
AACTGCTCTATTTCGCTGTGACACCTTCCATGCGGACGTCATTCTAGTCT
TGGGTGGAGACCGCCATCGGGAGCTCACAGCCGTGCGTCTTTTCCATGAG
AAAGCAATCGTCTCTGCCCTCGCCCTTCCCCACCACCAACATAAAAGTCG
CATCCACATCGACTACACCCGCACACCCCTAATCCTCTCCTCGGGCACCA
TCGGTCCAGATGACCTTCCTTCCTACCTCCCACCCTCGCTTTGCATCACC
TTTGATCGACGCGCCATTTGCACTCTGACCAACTTTACGTCCCTATCTTC
GTCTTTTCAAGCCCAGGGGGTACGGCGGGTCCTAGTTTTGACTTCGTCTT
CCCATCTCCCCCGTGCGCTGGCTGTAGGCAGCGTGGTGCTAGGGGCAGGA
GCGATAGATGTGCGTGGGCTCGGTATCGAAGGAAGTGGTGGAGGAGGACA
GGGAGAGGAAGGGTGGTTGAGGAGGGGAAGGGATTACGTGAGGGCATGGG
TGTGGGTAGTTTTTGGGTGGGAGTGGAGAGGCGTGGTGGCTTGGGTACAT
CCCACAAGAAAAGCTGAAGAAGGATAA
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protein sequence of NO07G00340.1

>NO07G00340.1-protein ID=NO07G00340.1-protein|Name=NO07G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MMISAFDLAAGWSMARTSAALAIVSLLCLSSSSMAVGRRLRTRICTTLQR
LRRRQRRSWQDIKQDKETALFRCDTFHADVILVLGGDRHRELTAVRLFHE
KAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCIT
FDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAG
AIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFGWEWRGVVAWVH
PTRKAEEG*
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Synonyms
Publications