NO07G00340.1, NO07G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00340.1
Unique NameNO07G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr7:136127..136903 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:136127..136903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00340.1 vs.
Match: EWM27350.1 (protein of unknown function DUF218 [Nannochloropsis gaditana])

HSP 1 Score: 196.1 bits (497), Expect = 1.400e-46
Identity = 107/185 (57.84%), Postives = 125/185 (67.57%), Query Frame = 0 
Query:   76 FHADVILVLGGDRHRELTAVRLFHEKAIVSALALPHHQH--KSRIHIDYTRTPLILSSGTIGPDDLP-SYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFGWEWRGVVAWVHPTRKAEE 258
            F AD +LVLGGDRHRELTAVRLF    + S    P   H     IH+DY + PL +SSG + PD+LP + L P   I  DRRA+CTLTNFTSL  +F+A  +R VLV+TS SHL RAL VGS+VLG+  I VRGLG+E  G    GEEGW RRGRD +RAW WV  GWE R VV W HP RK E+
Sbjct:   70 FRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGG----GEEGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ 250
The following BLAST results are available for this feature:
BLAST of NO07G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27350.11.400e-4657.84protein of unknown function DUF218 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00340NO07G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00340.1NO07G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00340.1.cds1NO07G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00340.1 ID=NO07G00340.1|Name=NO07G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
ATGATGATCTCCGCGTTTGATCTTGCGGCTGGTTGGTCCATGGCACGCAC
TAGTGCAGCGCTTGCCATTGTCTCCCTTTTGTGCCTCTCTTCTTCTTCCA
TGGCCGTGGGCCGCCGTCTCCGCACCCGGATATGCACCACTTTGCAGCGA
CTTCGCCGTAGACAAAGGCGTTCATGGCAAGACATAAAGCAGGACAAGGA
AACTGCTCTATTTCGCTGTGACACCTTCCATGCGGACGTCATTCTAGTCT
TGGGTGGAGACCGCCATCGGGAGCTCACAGCCGTGCGTCTTTTCCATGAG
AAAGCAATCGTCTCTGCCCTCGCCCTTCCCCACCACCAACATAAAAGTCG
CATCCACATCGACTACACCCGCACACCCCTAATCCTCTCCTCGGGCACCA
TCGGTCCAGATGACCTTCCTTCCTACCTCCCACCCTCGCTTTGCATCACC
TTTGATCGACGCGCCATTTGCACTCTGACCAACTTTACGTCCCTATCTTC
GTCTTTTCAAGCCCAGGGGGTACGGCGGGTCCTAGTTTTGACTTCGTCTT
CCCATCTCCCCCGTGCGCTGGCTGTAGGCAGCGTGGTGCTAGGGGCAGGA
GCGATAGATGTGCGTGGGCTCGGTATCGAAGGAAGTGGTGGAGGAGGACA
GGGAGAGGAAGGGTGGTTGAGGAGGGGAAGGGATTACGTGAGGGCATGGG
TGTGGGTAGTTTTTGGGTGGGAGTGGAGAGGCGTGGTGGCTTGGGTACAT
CCCACAAGAAAAGCTGAAGAAGGATAA
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protein sequence of NO07G00340.1

>NO07G00340.1-protein ID=NO07G00340.1-protein|Name=NO07G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MMISAFDLAAGWSMARTSAALAIVSLLCLSSSSMAVGRRLRTRICTTLQR
LRRRQRRSWQDIKQDKETALFRCDTFHADVILVLGGDRHRELTAVRLFHE
KAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCIT
FDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAG
AIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFGWEWRGVVAWVH
PTRKAEEG*
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mRNA from alignment at chr7:136127..136903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00340.1 ID=NO07G00340.1|Name=NO07G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at chr7:136127..136903- (Nannochloropsis oceanica)
ATGATGATCTCCGCGTTTGATCTTGCGGCTGGTTGGTCCATGGCACGCAC
TAGTGCAGCGCTTGCCATTGTCTCCCTTTTGTGCCTCTCTTCTTCTTCCA
TGGCCGTGGGCCGCCGTCTCCGCACCCGGATATGCACCACTTTGCAGCGA
CTTCGCCGTAGACAAAGGCGTTCATGGCAAGACATAAAGCAGGACAAGGA
AACTGCTCTATTTCGCTGTGACACCTTCCATGCGGACGTCATTCTAGTCT
TGGGTGGAGACCGCCATCGGGAGCTCACAGCCGTGCGTCTTTTCCATGAG
AAAGCAATCGTCTCTGCCCTCGCCCTTCCCCACCACCAACATAAAAGTCG
CATCCACATCGACTACACCCGCACACCCCTAATCCTCTCCTCGGGCACCA
TCGGTCCAGATGACCTTCCTTCCTACCTCCCACCCTCGCTTTGCATCACC
TTTGATCGACGCGCCATTTGCACTCTGACCAACTTTACGTCCCTATCTTC
GTCTTTTCAAGCCCAGGGGGTACGGCGGGTCCTAGTTTTGACTTCGTCTT
CCCATCTCCCCCGTGCGCTGGCTGTAGGCAGCGTGGTGCTAGGGGCAGGA
GCGATAGATGTGCGTGGGCTCGGTATCGAAGGAAGTGGTGGAGGAGGACA
GGGAGAGGAAGGGTGGTTGAGGAGGGGAAGGGATTACGTGAGGGCATGGG
TGTGGGTAGTTTTTGGGTGGGAGTGGAGAGGCGTGGTGGCTTGGGTACAT
CCCACAAGAAAAGCTGAAGAAGGATAA
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Coding sequence (CDS) from alignment at chr7:136127..136903-

>NO07G00340.1 ID=NO07G00340.1|Name=NO07G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr7:136127..136903- (Nannochloropsis oceanica)
ATGATGATCTCCGCGTTTGATCTTGCGGCTGGTTGGTCCATGGCACGCAC
TAGTGCAGCGCTTGCCATTGTCTCCCTTTTGTGCCTCTCTTCTTCTTCCA
TGGCCGTGGGCCGCCGTCTCCGCACCCGGATATGCACCACTTTGCAGCGA
CTTCGCCGTAGACAAAGGCGTTCATGGCAAGACATAAAGCAGGACAAGGA
AACTGCTCTATTTCGCTGTGACACCTTCCATGCGGACGTCATTCTAGTCT
TGGGTGGAGACCGCCATCGGGAGCTCACAGCCGTGCGTCTTTTCCATGAG
AAAGCAATCGTCTCTGCCCTCGCCCTTCCCCACCACCAACATAAAAGTCG
CATCCACATCGACTACACCCGCACACCCCTAATCCTCTCCTCGGGCACCA
TCGGTCCAGATGACCTTCCTTCCTACCTCCCACCCTCGCTTTGCATCACC
TTTGATCGACGCGCCATTTGCACTCTGACCAACTTTACGTCCCTATCTTC
GTCTTTTCAAGCCCAGGGGGTACGGCGGGTCCTAGTTTTGACTTCGTCTT
CCCATCTCCCCCGTGCGCTGGCTGTAGGCAGCGTGGTGCTAGGGGCAGGA
GCGATAGATGTGCGTGGGCTCGGTATCGAAGGAAGTGGTGGAGGAGGACA
GGGAGAGGAAGGGTGGTTGAGGAGGGGAAGGGATTACGTGAGGGCATGGG
TGTGGGTAGTTTTTGGGTGGGAGTGGAGAGGCGTGGTGGCTTGGGTACAT
CCCACAAGAAAAGCTGAAGAAGGATAA
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Synonyms
Publications