NO07G00190, NO07G00190 (gene) Nannochloropsis oceanica

Overview
NameNO07G00190
Unique NameNO07G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2624
Alignment locationchr7:86236..88859 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:86236..88859 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR009071HMG_box_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO07G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL102nonsL102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000885NSK000885Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00190.1NO07G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00190.1NO07G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00190 ID=NO07G00190|Name=NO07G00190|organism=Nannochloropsis oceanica|type=gene|length=2624bp
ATGCCCGCTTCCTCTTCATCTCCTCTCCCTCGCTGTCCTCTTCGTCGCCG
CGGTCTCAATCCCTCCTCTGTCTCAGCTTCTTCTCCCGACCTCTCCTCCT
CTTCCCTCCCTACACCCCGACCCACCGACTGGATCCCAGACCTAGAAGTC
CTTCACACACGCTACATAGCCCCTCGTCCTCCCTGCTCCCCATACTTCCT
CTTCTGTCTCGACCAAAAAGAGGGGGTGCGTGCCACCCTTCCCGGTGGAG
GGGGGCGAGACAGGGACCCCCGTGCTGTGATCGTCCGCTTGAAAGAACTA
TGGAAAACTTGTCCAGACGCCCAACGAGCCGTCTATGTCACCAAGGCCAT
GTGGGACCGCGAAAGATATAGTCGAGAATTAGATGGGTGGAAGCAGGCCG
AGGCAGGAGCAAGGCGGAGGGAGGGAGGGAGGGAGGAAGTTTGGATGGGG
GGGCATTGTCCTCCGAGGGGGATGATGGAGCCAAGCTCGCCATCGCCGCC
CGCGAGAAAAGGCAATGAGGAGGAGGGAGGGGGTGACAGAGGTGCTGGAC
AAGGGCAGAATCAAAACCACCGCCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGGCTTTGATCGCGTGTGCCAAGGAGGGGGACCTGAAGGGATTGCA
GAGGGTGCTAGGGTGGGGAGGGGGGCAGGGAGCGAGGGAGGAAGGGAAGG
GGCATGGCGAAGGGGTCGTGGATATAGATGCATGGGATGAGATGGAGGGG
CTGACGCCATTATTGGCCGCGACATTATGGTCGGATTACGCAACAGTGGA
TTTGTTAATGTCTTCCTCCCCCTCCCCCTCCCCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCGTCGGCGTCCTTA
CACGGAGTGAGGGGAGGGACGACAACAATAATGACAACACCAACATCAAC
AGCAGTCATAGAGGGAAGGGGAGGACGAGGGGCCGACCCCCGGGTGGGCA
CGCCGTTTGGAGGCATTACGCCCTGCCATGTGGCGGCTTTAAAGGACCCA
TCGATGTTGCTCGTTCTCTTGGACCATGAGTGCACTGGTGGAAGCTGCAG
CACTAGCAGTAGTAGCAGCAGCAACAGCAGCAGCTACTTTACGGCCGGCA
TCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCCGCAATAA
GAACGAGACAAGTGCTCCCCCTGTTTCCCCCGACCAACCACTATCTCCTT
CCTCCACCCCCATCTCCCTCCTCCCCTCCCTCCTCTCCGCCCTGGACTCC
GACGGTCGCTCCCCGCTGCACTACGCGTGTTTGGGGGGAAACCCGCTCTG
TGTCTCCATCCTTCTTGACCGAGGGGCAGGGCGGGAGGGCGAGAGGGACA
GGTGGGGCTTGACGCCCTTGGAGCTGGCAATTAGAGAGAGGGTGCCCGAA
ATAGTGGAGATTGAATCGTTGTTGCGGAGGGTGGTGGTGTTCAGAGGGAG
TGAGGAAGGGAGGGAGGGAGTGGTGCCGGGAAAGGGGGTTAGGAGGGgtg
agggagagagagggggggaggaaggggaggatgacggccgtttgattttg
gaaagggagcagaagcgggtcaagacagtgagcagtgggggagatcgagg
aggaggaggagggatgaaggggggagaggaagggagagagggagggaggg
agggaggggggggggcttgtcgacgatggtggggtcgttggcatcttggg
cgatggggaagccttcctacctacctccctcctcctcttcctacaaagCA
CGGCATGGCATGGGGGACTGGCGCAACAACAGCAGCAGCAGCAGTAGCAG
CAGCAGCCAGAGTAGCATCACAAGCACCTCCGCTTCTTCCTCCTTCCCTT
CCTCCGCTTCTTCCTCCTTTCCTCCTTCCTCCATTGCGCTACGAATTCCC
ATTAACGGCAGGAGGGATAAGCCTCCTTCTGGTGCTGGGCAGGAGGGTGA
CAGGGAGGACGGGAGGGAGGGCGGGAGGGACGACGTATTGATCGAGACAG
CGGTGTGGTGCGATGCGAGGGAAAGTCAAAAGGAGAGGGAAGCGACGAGC
AGGAGGATGGAGGAGGAGAGGAGATTGGCTGAGGCCCTTATGTCTAGGCG
GGACGAGCACCATATGATGAAGAAGGAATCATTTATGTCAGGCTGGGGTC
TGGGGGAGGGAGGGGGGGGGGGAGATGGGCCGCATGTGAGGACGAAGGGG
AGGGAGAGGAAGACGGAAAATGCGGGGTTGTTTGCGCAGATGAGTGCGGA
GGAGGAGGTGGAGGAGGGAGGGGTAGAGGGAAGGATGCTCCTGTCGAGAG
TAGAAAGGGAGGAGCTGAAGGAGGGAGGGGAGGAGGGAGAACGAGGCCGC
CTGATGACGGTGACGGTGGGTGCCCCAGGAGTAGACAATGGAGGGAGAGG
AGGGGAGGGAGGGGGAGAGGGAGGAGAGGAGAGCTTGTTGCAGGTTTGGA
CGAGGCGGGGGGCGGCAGCGGCGGCGGCGGCGGTGTTGGTGACATGTGCA
CTGACCTTACCGGTGTGGTTGTAG
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protein sequence of NO07G00190.1

>NO07G00190.1-protein ID=NO07G00190.1-protein|Name=NO07G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=791bp
MPASSSSPLPRCPLRRRGLNPSSVSASSPDLSSSSLPTPRPTDWIPDLEV
LHTRYIAPRPPCSPYFLFCLDQKEGVRATLPGGGGRDRDPRAVIVRLKEL
WKTCPDAQRAVYVTKAMWDRERYSRELDGWKQAEAGARRREGGREEVWMG
GHCPPRGMMEPSSPSPPARKGNEEEGGGDRGAGQGQNQNHRQQQQQQQQQ
QQALIACAKEGDLKGLQRVLGWGGGQGAREEGKGHGEGVVDIDAWDEMEG
LTPLLAATLWSDYATVDLLMSSSPSPSPSSSSSSSSSSSSSSSSFSSASL
HGVRGGTTTIMTTPTSTAVIEGRGGRGADPRVGTPFGGITPCHVAALKDP
SMLLVLLDHECTGGSCSTSSSSSSNSSSYFTAGISSSSSSSSSSSSSSSS
SSSSSSSSSSNSSSRNKNETSAPPVSPDQPLSPSSTPISLLPSLLSALDS
DGRSPLHYACLGGNPLCVSILLDRGAGREGERDRWGLTPLELAIRERVPE
IVEIESLLRRVVVFRGSEEGREGVVPGKGVRRARHGMGDWRNNSSSSSSS
SSQSSITSTSASSSFPSSASSSFPPSSIALRIPINGRRDKPPSGAGQEGD
REDGREGGRDDVLIETAVWCDARESQKEREATSRRMEEERRLAEALMSRR
DEHHMMKKESFMSGWGLGEGGGGGDGPHVRTKGRERKTENAGLFAQMSAE
EEVEEGGVEGRMLLSRVEREELKEGGEEGERGRLMTVTVGAPGVDNGGRG
GEGGGEGGEESLLQVWTRRGAAAAAAAVLVTCALTLPVWL*
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Synonyms
Publications