NO07G00040, NO07G00040 (gene) Nannochloropsis oceanica

Overview
NameNO07G00040
Unique NameNO07G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2229
Alignment locationchr7:23711..25939 +

Link to JBrowse

Properties
Property NameValue
DescriptionOtu domain-containing protein 6b
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:23711..25939 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain_like_cys_pep_sf
IPR003323OTU_dom
Homology
BLAST of NO07G00040 vs. NCBI_GenBank
Match: EWM27374.1 (Ovarian tumor, otubain [Nannochloropsis gaditana])

HSP 1 Score: 226.5 bits (576), Expect = 1.400e-55
Identity = 112/171 (65.50%), Postives = 135/171 (78.95%), Query Frame = 0
Query:  204 AKRHIVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLISHGHPPLDHQQVRRAAARHMREYPQDFIPFLAGGRTEGGEEGGLEAYAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMGESDYPEEAALLLSYHRQFYALGEHYNSVVPVKGGRAEE 375
            AK  +V  R++EM Q+LSLLSP+GL + EV ADGHCLYR+VAHQL   G P   + +VRR+AA+++  +P+DF+PFLAGG  E GE  GLEAY + +E+TAEWGGELEIRALCHAYQ PIRV+AAEQPVY +G  DY +   LLLSYHR FYALGEHYNSVVPV+ GR EE
Sbjct:   93 AKEGVVSLRDLEMGQILSLLSPLGLRVQEVPADGHCLYRAVAHQLEHQGIPSQGYPEVRRSAAQYILSHPEDFLPFLAGG--EEGEGAGLEAYVHTVEDTAEWGGELEIRALCHAYQTPIRVYAAEQPVYMIGAEDYDQAKPLLLSYHRHFYALGEHYNSVVPVE-GRVEE 260          
BLAST of NO07G00040 vs. NCBI_GenBank
Match: KOO24432.1 (cysteine proteinases family protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 154.5 bits (389), Expect = 6.700e-34
Identity = 74/155 (47.74%), Postives = 110/155 (70.97%), Query Frame = 0
Query:  212 REIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLISHGHPPLDHQQVRRAAARHMREYPQDFIPFLAGGRTEGGEEGGLEAYAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMGESDYPEEAALLLSYHRQFYALGEHYNSVVP 367
            R++E+ +L ++LSP+GL +H++AADGHCLYRS+AHQL + G  P+D  Q R   A +MR++P DF P+L  G T+ G      AY   +E ++EWGG+LEI AL HA +R + V++A+ P  T GE +Y +E+ +LL++HR ++ LG HYN+VVP
Sbjct:  150 RDVELGKLEAILSPLGLAVHDIAADGHCLYRSLAHQLQAGGE-PIDFTQCRADIAAYMRKHPHDFEPYLEEGCTDFG------AYCETVEHSSEWGGQLEIAALAHARKRKVTVYSADAPALTAGE-EYDDESPILLAFHRHYFGLGAHYNAVVP 296          
BLAST of NO07G00040 vs. NCBI_GenBank
Match: XP_002958768.1 (hypothetical protein VOLCADRAFT_69916 [Volvox carteri f. nagariensis] >EFJ40158.1 hypothetical protein VOLCADRAFT_69916, partial [Volvox carteri f. nagariensis])

HSP 1 Score: 142.1 bits (357), Expect = 3.500e-30
Identity = 78/167 (46.71%), Postives = 105/167 (62.87%), Query Frame = 0
Query:  212 REIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLI---SHGHPPLDHQQVRRAAARHMREYPQDFIPFLAGGRTEGGEEGGLEAYAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMGESDYPEEAALLLSYHRQFYALGEHYNSVVPVKGGRAEEE 376
            + +E +QLL +L+PM L I E+ ADGHCLYR+V  QL    S    P D+  +RR AA H+R + +DF+PF+    + G  E  LE Y   LEETA WGG+LE+ AL  A ++ I+V+AA  P  T+G+ ++ EE  L L Y R  + LGEHYNSVVP+ GG    E
Sbjct:   35 KAVEEEQLLQILAPMKLGIREIRADGHCLYRTVEDQLAQAQSRRAVP-DYLALRRLAASHIRAHAEDFLPFIYDEDSPGSGEEQLEGYCRELEETAVWGGQLELGALAQALRKQIKVYAAGLPPVTLGD-EHAEEGVLQLCYLRHAFGLGEHYNSVVPLGGGAGRGE 199          
BLAST of NO07G00040 vs. NCBI_GenBank
Match: XP_022148608.1 (OTU domain-containing protein 6B [Momordica charantia] >XP_022148617.1 OTU domain-containing protein 6B [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 1.300e-29
Identity = 72/171 (42.11%), Postives = 104/171 (60.82%), Query Frame = 0
Query:  203 EAKRHIVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQL--ISHGHPPLDHQQVRRAAARHMREYPQDFIPFLAGGRTEGGEEGGLEAYAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMGESDYPEE----AALLLSYHRQFYALGEHYNSVVPV 368
            E + +IV  R +E +QL   L P+GL +HE+  DGHCLYR+V +QL  +S G PP   Q++R+  A +MR++  D++PF     T+       E Y   +E TA WGG+LE+ AL H  Q+ I +F+   P   MG+ +Y  E    +++ LSYH+  + LGEHYNSVVPV
Sbjct:  150 EEQSNIVSDRMVENEQLEKKLGPLGLTVHEIKPDGHCLYRAVENQLAFLSGGSPPYTFQELRKMVATYMRDHSPDYMPFFLSDNTDDSLAERFENYCKEVESTAAWGGQLELGALTHCLQKHIMIFSGSFPDVEMGK-EYKSEGLVNSSIRLSYHKHAFGLGEHYNSVVPV 319          
BLAST of NO07G00040 vs. NCBI_GenBank
Match: XP_010413217.1 (PREDICTED: OTU domain-containing protein 6B-like [Camelina sativa])

HSP 1 Score: 138.7 bits (348), Expect = 3.800e-29
Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 0
Query:  207 HIVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLI--SHGHPPLDHQQVRRAAARHMREYPQDFIPFLAG---GRTEGGEEGGLEAYAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMG-ESDYPEEAALLLSYHRQFYALGEHYNSVVPV 368
            H+   R IE ++L   L P+GL I E+  DGHCLYR+V +QL   S G  P  +Q++R  AA +MR++  DF+PF        +EG  E   E Y   +E TA WGG+LE+ AL H  ++ I VF+   P   MG E    ++++L+LSYHR  + LGEHYNSVVP+
Sbjct:  157 HVTSDRMIENQKLEKKLKPLGLTISEIKPDGHCLYRAVENQLATRSGGASPYSYQKLREMAASYMRDHKPDFLPFFLSETVSESEGSAEERFEKYCREVESTAAWGGQLELGALTHCLRKHIMVFSGSFPDVVMGKEYKSSDDSSLMLSYHRHAFGLGEHYNSVVPI 323          
BLAST of NO07G00040 vs. NCBI_GenBank
Match: XP_010512692.1 (PREDICTED: OTU domain-containing protein 6B [Camelina sativa])

HSP 1 Score: 138.3 bits (347), Expect = 5.000e-29
Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 0
Query:  207 HIVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLI--SHGHPPLDHQQVRRAAARHMREYPQDFIPFL---AGGRTEGGEEGGLEAYAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMG-ESDYPEEAALLLSYHRQFYALGEHYNSVVPV 368
            ++   R IE ++L   L P+GL I E+  DGHCLYR+V +QL   S G  P  +Q++R  AA +MRE+  DF+PF    A   +EG  E   E Y   +E TA WGG+LE+ AL H  ++ I VF+   P   MG E    ++++L+LSYHR  + LGEHYNSVVP+
Sbjct:  158 NVTSDRMIENQKLEKKLKPLGLTISEIKPDGHCLYRAVENQLATRSGGASPYSYQKLREMAASYMREHKPDFLPFFSSEAVSESEGSAEERFEKYCIEVESTAAWGGQLELGALTHCLRKHIMVFSGSFPDVVMGKEYKSSDDSSLMLSYHRHAFGLGEHYNSVVPI 324          
BLAST of NO07G00040 vs. NCBI_GenBank
Match: XP_010468904.1 (PREDICTED: OTU domain-containing protein 6B-like [Camelina sativa])

HSP 1 Score: 138.3 bits (347), Expect = 5.000e-29
Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 0
Query:  207 HIVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLI--SHGHPPLDHQQVRRAAARHMREYPQDFIPFLAG---GRTEGGEEGGLEAYAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMG-ESDYPEEAALLLSYHRQFYALGEHYNSVVPV 368
            H+   R IE ++L   L P+GL I E+  DGHCLYR+V +QL   S G  P  +Q++R  AA +MR++  DF+PF        +EG  E   E Y   +E TA WGG+LE+ AL H  ++ I VF+   P   MG E    ++++L+LSYHR  + LGEHYNSVVP+
Sbjct:  155 HVTSDRMIENQKLEKKLKPLGLTISEIKPDGHCLYRAVENQLATRSGGASPYSYQKLREMAASYMRDHKPDFLPFFLSETVSESEGSAEERFEKYCREVESTAAWGGQLELGALTHCLRKHIMVFSGSFPDVIMGKEYKSSDDSSLMLSYHRHAFGLGEHYNSVVPI 321          
BLAST of NO07G00040 vs. NCBI_GenBank
Match: XP_024397303.1 (OTU domain-containing protein 6B-like [Physcomitrella patens] >PNR38998.1 hypothetical protein PHYPA_019276 [Physcomitrella patens])

HSP 1 Score: 137.9 bits (346), Expect = 6.500e-29
Identity = 73/167 (43.71%), Postives = 103/167 (61.68%), Query Frame = 0
Query:  207 HIVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLISHGH--PPLDHQQVRRAAARHMREYPQDFIPFLAGG---RTEGGE-EGGLEAYAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMGESDYPEEAALLLSYHRQFYALGEHYNSVVPV 368
            ++V  RE+E +QL + L+P+GL + E+  DGHCLYR+V  QL  H +  P L +QQ+R  AA  MR +P+DF+PF+ G      EG + +   E Y   +E TA WGG+LE+ AL  A ++ I V++A  P   MG      +  L +SYHR  + LGEHYNSVVP+
Sbjct:  150 NLVNEREVEDQQLTNKLNPIGLGLKEIKPDGHCLYRAVEDQLALHPNACPLLSYQQLRELAASFMRSHPEDFLPFIGGDLEREIEGNDPQSKFETYCREVEATASWGGQLELGALAQALKKHIVVYSANGPDVEMGTEYTNADLKLRISYHRHAFGLGEHYNSVVPL 316          
BLAST of NO07G00040 vs. NCBI_GenBank
Match: KMZ60496.1 (putative OTU domain-containing protein 6B [Zostera marina])

HSP 1 Score: 137.9 bits (346), Expect = 6.500e-29
Identity = 76/168 (45.24%), Postives = 99/168 (58.93%), Query Frame = 0
Query:  208 IVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQL-----ISHGHPPLDHQQVRRAAARHMREYPQDFIPFLAGGRTEGGEEGGLEA---YAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMG-ESDYPEEAALLLSYHRQFYALGEHYNSVVP 367
            IV  R IE  +LL  L P+GL IHE+  DGHCLYR+V HQL     IS      ++Q++R   A++MRE+  DF+PF      +   E  +E    Y   +E TA WGG+LE+ AL H  ++ I +++   P   MG E   PE  A+LLSYHR  Y LGEHYNSVVP
Sbjct:  151 IVSDRMIEDVKLLKKLVPIGLKIHEIKPDGHCLYRAVEHQLSLNSQISVPTATYNYQELRDMVAKYMREHAADFLPFFLSDSADADSESAMEKFENYCKEIESTASWGGQLELGALTHILKKHIMIYSGSFPDVHMGKEYMLPENPAILLSYHRHAYGLGEHYNSVVP 318          
BLAST of NO07G00040 vs. NCBI_GenBank
Match: KXZ45272.1 (hypothetical protein GPECTOR_56g368 [Gonium pectorale])

HSP 1 Score: 137.9 bits (346), Expect = 6.500e-29
Identity = 73/165 (44.24%), Postives = 99/165 (60.00%), Query Frame = 0
Query:  212 REIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLISH--GHPPLDHQQVRRAAARHMREYPQDFIPFLAGGRTEGGEEGGLEAYAYRLEETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMGESDYPEEAALLLSYHRQFYALGEHYNSVVPVKGGRAEE 375
            + +E  +L  LL+P+ L I E+ ADGHCLYR+V  QL        P DH  +RR AA H+R +  DF+PF+    +EGG +  LEAY   LE TA WGG+LE+ AL    +R I+V+A   P  T+G+ ++     L L Y R  + LGEHYNSV P++G  A E
Sbjct:  214 KALEEDRLRELLAPLRLGIREIRADGHCLYRAVEDQLSQQAGASSPHDHLALRRLAAAHIRSHADDFLPFIFDEDSEGGPQEQLEAYCAELEGTAAWGGQLELGALAQVLKRQIKVYACGMPPVTLGD-EHAAAGVLQLCYLRHAFGLGEHYNSVQPLQGAGAAE 377          
The following BLAST results are available for this feature:
BLAST of NO07G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27374.11.400e-5565.50Ovarian tumor, otubain [Nannochloropsis gaditana][more]
KOO24432.16.700e-3447.74cysteine proteinases family protein [Chrysochromul... [more]
XP_002958768.13.500e-3046.71hypothetical protein VOLCADRAFT_69916 [Volvox cart... [more]
XP_022148608.11.300e-2942.11OTU domain-containing protein 6B [Momordica charan... [more]
XP_010413217.13.800e-2943.71PREDICTED: OTU domain-containing protein 6B-like [... [more]
XP_010512692.15.000e-2944.31PREDICTED: OTU domain-containing protein 6B [Camel... [more]
XP_010468904.15.000e-2943.71PREDICTED: OTU domain-containing protein 6B-like [... [more]
XP_024397303.16.500e-2943.71OTU domain-containing protein 6B-like [Physcomitre... [more]
KMZ60496.16.500e-2945.24putative OTU domain-containing protein 6B [Zostera... [more]
KXZ45272.16.500e-2944.24hypothetical protein GPECTOR_56g368 [Gonium pector... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL098nonsL098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR023ncniR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR136ngnoR136Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000894NSK000894Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00040.1NO07G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|644451gene_11466Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100696g1gene3184Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00040.1NO07G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00040 ID=NO07G00040|Name=NO07G00040|organism=Nannochloropsis oceanica|type=gene|length=2229bp
TCGCCACGGCGTGTGAGTGTGTCTATGTGTGTGCGTGAGAAAGAGAAAAG
GGGAGTGAGACGTTGCTTGATTTTTGGGCGACGAAGCGGCGATGTTGGTT
GCCATGGACAAGCAGTTAGGTACCTTCTGGCCTTTGGTCACACACCCAGG
CAGTGAACCAGTTTCTGTAATAAGAGACATAGAGACGCAGTAGTCAACGA
GGCCATTTGCATGTTTTTTGTCCTCTTAATGATTTTTTTTAATTGCACAC
GAGCGACGACTCACCTCGGTCATCATCCGATTTCGCCTCTACCTCCTCGT
CTCCCTACACGCAGGCCTCACACGAGCCCAAGCGAGGCCATGATGAAAGA
AGAGGAGGCCGCGCGAGAGACAGTCGGGGAAACGCAGGAGGAGATGCGCA
AGCGGCACAAGAGCGAAGTGCGGgtaagtcgcagcaagggaatgacaggg
cgtgggaagggggggaggaaacgagggagagggtcgacatggccttcgat
gctcgagagcttcaaaagggtatcaatctagttgctaatagggcacaaga
gcctgagccccatgagccctcgacatttgctcatctcctcttgtcttcaa
cctttctacatccccttccctcatcctccgttgctgccagCAACTGGAAG
GGCAAACCCGGGCCATGCTGAAAAAGGCCCCCAAGCCCAAGAAAGCCGAA
GTCCAGGGCGAGGTGGCAAAGATGGAAAGGGATATAGAGGAGCGGCACAA
GAAGGAGCAGATGCGGTGGGCGGATGGgtaagggagggagggaaggaaag
gagtggaagacctgccgcggagggaatgggatggaatgtagaaaagggag
ggcggccggttttcttcatgtggtcatgtgccacaatgccaagagccatg
ccctttctagttgtttcttccccctttctcaattttctcggtttttccat
accaaccccacgcagAGGAGGAGGAGGAGGAGGAAAGGAAGACGGTGTCA
AAGGAGTTCGGTTCGCGCCTGCCATCAACATCAAGAAGGGCGAGGGTGAG
GGAAAAGCAGCAGGAGGAGGGGGCAAGGGCAACAGGGATGGAGAGAGCGA
CGAGGAGGAAGATGAGAGCGGGATGACCGAGGCGGAGAAGGTGGCGCGGA
AACGAGACAAGGCCCGGCGGAAGAAGGAACGCAAAGCCCAAAGgtacgtg
tgggcaggaagaaggacggcaaacagccaagaaggtaagggaagtgagag
aggggggcattcttatcaacaggtccagccggctttacttccgacctccc
ctcgtcatgccctcccttcctccccctcatcagAGAAGCAGAGCGCCAAG
CGGAGATCGAGGAGGCGAAGAGGCACATCGTCCCTCCCCGCGAGATTGAG
ATGAAACAGCTCCTGTCCCTCCTATCCCCCATGGGCCTGGACATCCACGA
GGTGGCTGCCGATGGCCACTGCCTCTACCGATCTGTGGCGCACCAGgtgg
gtctcgccgaagcgcctgcctcctgaagaccccctccctccctcctcccg
ccggagtccaaaacagctccagatcggatgacaccccgctcgctccacac
gcccttgctcacctacatcgtctctctttcctccatccctctccacctac
ccacgccagCTCATCAGCCACGGCCACCCGCCTCTGGACCACCAGCAAGT
TCGACGAGCCGCGGCCCGGCATATGAGAGAGTACCCCCAGGATTTCATCC
CCTTCCTCGCTGGGGGCAGGACGGAGGGAGGGGAGGAGGGAGGGCTGGAG
GCGTATGCCTACAGGCTCGAAGAGACGGCAGAGTGGGGAGGGGAGCTGGA
GATACGAGCGCTGgtaagagagagggagggagggagggaggaagggggag
atggcccagggagatggccgacacaaccgccaacgtcctcattacctccc
accctcacttatccattctacgcgttcgtctatctgcagTGTCACGCCTA
CCAAAGACCCATCCGCGTGTTTGCGGCGGAGCAGCCTGTTTACACGATGG
GGGAGAGCGATTACCCGGAAGAGGCGGCCCTCCTTCTGTCCTACCACCGA
CAGTTCTATGCCCTAGGGGAGCACTACAACAGCGTCGTGCCCGTGAAGGG
AGGGAGGGCAGAAGAGGAGAGTTAGAGGTAGACATAAACAAATAAAGCAT
TGATAACGAGAGGAATAAGGTGCCATGAG
back to top

protein sequence of NO07G00040.1

>NO07G00040.1-protein ID=NO07G00040.1-protein|Name=NO07G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MFFVLLMIFFNCTRATTHLGHHPISPLPPRLPTRRPHTSPSEAMMKEEEA
ARETVGETQEEMRKRHKSEVRQLEGQTRAMLKKAPKPKKAEVQGEVAKME
RDIEERHKKEQMRWADGGGGGGGKEDGVKGVRFAPAINIKKGEGEGKAAG
GGGKGNRDGESDEEEDESGMTEAEKVARKRDKARRKKERKAQREAERQAE
IEEAKRHIVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLIS
HGHPPLDHQQVRRAAARHMREYPQDFIPFLAGGRTEGGEEGGLEAYAYRL
EETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMGESDYPEEAALLLSY
HRQFYALGEHYNSVVPVKGGRAEEES*
back to top
Synonyms
Publications