NO07G00040.1, NO07G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00040.1
Unique NameNO07G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1395
Alignment locationchr7:23711..25939 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:23711..25939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00040.1 vs.
Match: XP_005854635.1 (otu domain-containing protein 6b [Nannochloropsis gaditana CCMP526]; EKU21722.1 otu domain-containing protein 6b [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 245.7 bits (626), Expect = 2.200e-61
Identity = 156/271 (57.56%), Postives = 189/271 (69.74%), Query Frame = 0 
Query:   47 EEEAARETV--GETQEEMRKRHKSEVRQLEGQTRAMLKKAPKPKKAEVQGEVAKMERDIEERHKKEQMRWADGGGGGGGKEDGVKGVRFAPAINIKKGEGEGKAAGGGGKGNRDGESDEEEDESGMTEAEKVARKRDKARRKKERKAQREAERQAEIEEAKRHIVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLISHGHPPLDHQQVRRAAARHMREYPQDFIPFLAGGRTEGGEEGGLEAYAYRLEETAEWGGELEIRAL 316
            E  +  ETV   ET+EEMRKRHK+EVRQLEG+TRA+LKKAPKPKKAEVQGEVA+MERD+EERH +E  ++A    GG GK                                 +GES+EEED  G T AEKVARKRDKARRKKERKA+REAE +A    AK  +V  R++EM Q+LSLLSP+GL + EV ADGHCLYR+VAHQL   G P   + +VRR+AA+++  +P+DF+PFLAGG  E GE  GLEAY + +E+TAEWGGELEIRAL
Sbjct:    5 EASSPEETVDGAETEEEMRKRHKAEVRQLEGKTRALLKKAPKPKKAEVQGEVARMERDMEERHARELGKFAAAPNGGRGK-------------------------------GEEGESEEEEDG-GATAAEKVARKRDKARRKKERKAEREAEEEAARALAKEGVVSLRDLEMGQILSLLSPLGLRVQEVPADGHCLYRAVAHQLEHQGIPSQGYPEVRRSAAQYILSHPEDFLPFLAGG--EEGEAAGLEAYVHTVEDTAEWGGELEIRAL 241
The following BLAST results are available for this feature:
BLAST of NO07G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854635.12.200e-6157.56otu domain-containing protein 6b [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00040NO07G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00040.1NO07G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00040.1.cds1NO07G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00040.1.cds2NO07G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00040.1.cds3NO07G00040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00040.1.cds4NO07G00040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00040.1.cds5NO07G00040.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00040.1.cds6NO07G00040.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00040.1 ID=NO07G00040.1|Name=NO07G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp
TCGCCACGGCGTGTGAGTGTGTCTATGTGTGTGCGTGAGAAAGAGAAAAG
GGGAGTGAGACGTTGCTTGATTTTTGGGCGACGAAGCGGCGATGTTGGTT
GCCATGGACAAGCAGTTAGGTACCTTCTGGCCTTTGGTCACACACCCAGG
CAGTGAACCAGTTTCTGTAATAAGAGACATAGAGACGCAGTAGTCAACGA
GGCCATTTGCATGTTTTTTGTCCTCTTAATGATTTTTTTTAATTGCACAC
GAGCGACGACTCACCTCGGTCATCATCCGATTTCGCCTCTACCTCCTCGT
CTCCCTACACGCAGGCCTCACACGAGCCCAAGCGAGGCCATGATGAAAGA
AGAGGAGGCCGCGCGAGAGACAGTCGGGGAAACGCAGGAGGAGATGCGCA
AGCGGCACAAGAGCGAAGTGCGGCAACTGGAAGGGCAAACCCGGGCCATG
CTGAAAAAGGCCCCCAAGCCCAAGAAAGCCGAAGTCCAGGGCGAGGTGGC
AAAGATGGAAAGGGATATAGAGGAGCGGCACAAGAAGGAGCAGATGCGGT
GGGCGGATGGAGGAGGAGGAGGAGGAGGAAAGGAAGACGGTGTCAAAGGA
GTTCGGTTCGCGCCTGCCATCAACATCAAGAAGGGCGAGGGTGAGGGAAA
AGCAGCAGGAGGAGGGGGCAAGGGCAACAGGGATGGAGAGAGCGACGAGG
AGGAAGATGAGAGCGGGATGACCGAGGCGGAGAAGGTGGCGCGGAAACGA
GACAAGGCCCGGCGGAAGAAGGAACGCAAAGCCCAAAGAGAAGCAGAGCG
CCAAGCGGAGATCGAGGAGGCGAAGAGGCACATCGTCCCTCCCCGCGAGA
TTGAGATGAAACAGCTCCTGTCCCTCCTATCCCCCATGGGCCTGGACATC
CACGAGGTGGCTGCCGATGGCCACTGCCTCTACCGATCTGTGGCGCACCA
GCTCATCAGCCACGGCCACCCGCCTCTGGACCACCAGCAAGTTCGACGAG
CCGCGGCCCGGCATATGAGAGAGTACCCCCAGGATTTCATCCCCTTCCTC
GCTGGGGGCAGGACGGAGGGAGGGGAGGAGGGAGGGCTGGAGGCGTATGC
CTACAGGCTCGAAGAGACGGCAGAGTGGGGAGGGGAGCTGGAGATACGAG
CGCTGTGTCACGCCTACCAAAGACCCATCCGCGTGTTTGCGGCGGAGCAG
CCTGTTTACACGATGGGGGAGAGCGATTACCCGGAAGAGGCGGCCCTCCT
TCTGTCCTACCACCGACAGTTCTATGCCCTAGGGGAGCACTACAACAGCG
TCGTGCCCGTGAAGGGAGGGAGGGCAGAAGAGGAGAGTTAGAGGTAGACA
TAAACAAATAAAGCATTGATAACGAGAGGAATAAGGTGCCATGAG
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protein sequence of NO07G00040.1

>NO07G00040.1-protein ID=NO07G00040.1-protein|Name=NO07G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MFFVLLMIFFNCTRATTHLGHHPISPLPPRLPTRRPHTSPSEAMMKEEEA
ARETVGETQEEMRKRHKSEVRQLEGQTRAMLKKAPKPKKAEVQGEVAKME
RDIEERHKKEQMRWADGGGGGGGKEDGVKGVRFAPAINIKKGEGEGKAAG
GGGKGNRDGESDEEEDESGMTEAEKVARKRDKARRKKERKAQREAERQAE
IEEAKRHIVPPREIEMKQLLSLLSPMGLDIHEVAADGHCLYRSVAHQLIS
HGHPPLDHQQVRRAAARHMREYPQDFIPFLAGGRTEGGEEGGLEAYAYRL
EETAEWGGELEIRALCHAYQRPIRVFAAEQPVYTMGESDYPEEAALLLSY
HRQFYALGEHYNSVVPVKGGRAEEES*
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mRNA from alignment at chr7:23711..25939+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00040.1 ID=NO07G00040.1|Name=NO07G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp|location=Sequence derived from alignment at chr7:23711..25939+ (Nannochloropsis oceanica)
TCGCCACGGCGTGTGAGTGTGTCTATGTGTGTGCGTGAGAAAGAGAAAAG
GGGAGTGAGACGTTGCTTGATTTTTGGGCGACGAAGCGGCGATGTTGGTT
GCCATGGACAAGCAGTTAGGTACCTTCTGGCCTTTGGTCACACACCCAGG
CAGTGAACCAGTTTCTGTAATAAGAGACATAGAGACGCAGTAGTCAACGA
GGCCATTTGCATGTTTTTTGTCCTCTTAATGATTTTTTTTAATTGCACAC
GAGCGACGACTCACCTCGGTCATCATCCGATTTCGCCTCTACCTCCTCGT
CTCCCTACACGCAGGCCTCACACGAGCCCAAGCGAGGCCATGATGAAAGA
AGAGGAGGCCGCGCGAGAGACAGTCGGGGAAACGCAGGAGGAGATGCGCA
AGCGGCACAAGAGCGAAGTGCGGGTAAGTCGCAGCAAGGGAATGACAGGG
CGTGGGAAGGGGGGGAGGAAACGAGGGAGAGGGTCGACATGGCCTTCGAT
GCTCGAGAGCTTCAAAAGGGTATCAATCTAGTTGCTAATAGGGCACAAGA
GCCTGAGCCCCATGAGCCCTCGACATTTGCTCATCTCCTCTTGTCTTCAA
CCTTTCTACATCCCCTTCCCTCATCCTCCGTTGCTGCCAGCAACTGGAAG
GGCAAACCCGGGCCATGCTGAAAAAGGCCCCCAAGCCCAAGAAAGCCGAA
GTCCAGGGCGAGGTGGCAAAGATGGAAAGGGATATAGAGGAGCGGCACAA
GAAGGAGCAGATGCGGTGGGCGGATGGGTAAGGGAGGGAGGGAAGGAAAG
GAGTGGAAGACCTGCCGCGGAGGGAATGGGATGGAATGTAGAAAAGGGAG
GGCGGCCGGTTTTCTTCATGTGGTCATGTGCCACAATGCCAAGAGCCATG
CCCTTTCTAGTTGTTTCTTCCCCCTTTCTCAATTTTCTCGGTTTTTCCAT
ACCAACCCCACGCAGAGGAGGAGGAGGAGGAGGAAAGGAAGACGGTGTCA
AAGGAGTTCGGTTCGCGCCTGCCATCAACATCAAGAAGGGCGAGGGTGAG
GGAAAAGCAGCAGGAGGAGGGGGCAAGGGCAACAGGGATGGAGAGAGCGA
CGAGGAGGAAGATGAGAGCGGGATGACCGAGGCGGAGAAGGTGGCGCGGA
AACGAGACAAGGCCCGGCGGAAGAAGGAACGCAAAGCCCAAAGGTACGTG
TGGGCAGGAAGAAGGACGGCAAACAGCCAAGAAGGTAAGGGAAGTGAGAG
AGGGGGGCATTCTTATCAACAGGTCCAGCCGGCTTTACTTCCGACCTCCC
CTCGTCATGCCCTCCCTTCCTCCCCCTCATCAGAGAAGCAGAGCGCCAAG
CGGAGATCGAGGAGGCGAAGAGGCACATCGTCCCTCCCCGCGAGATTGAG
ATGAAACAGCTCCTGTCCCTCCTATCCCCCATGGGCCTGGACATCCACGA
GGTGGCTGCCGATGGCCACTGCCTCTACCGATCTGTGGCGCACCAGGTGG
GTCTCGCCGAAGCGCCTGCCTCCTGAAGACCCCCTCCCTCCCTCCTCCCG
CCGGAGTCCAAAACAGCTCCAGATCGGATGACACCCCGCTCGCTCCACAC
GCCCTTGCTCACCTACATCGTCTCTCTTTCCTCCATCCCTCTCCACCTAC
CCACGCCAGCTCATCAGCCACGGCCACCCGCCTCTGGACCACCAGCAAGT
TCGACGAGCCGCGGCCCGGCATATGAGAGAGTACCCCCAGGATTTCATCC
CCTTCCTCGCTGGGGGCAGGACGGAGGGAGGGGAGGAGGGAGGGCTGGAG
GCGTATGCCTACAGGCTCGAAGAGACGGCAGAGTGGGGAGGGGAGCTGGA
GATACGAGCGCTGGTAAGAGAGAGGGAGGGAGGGAGGGAGGAAGGGGGAG
ATGGCCCAGGGAGATGGCCGACACAACCGCCAACGTCCTCATTACCTCCC
ACCCTCACTTATCCATTCTACGCGTTCGTCTATCTGCAGTGTCACGCCTA
CCAAAGACCCATCCGCGTGTTTGCGGCGGAGCAGCCTGTTTACACGATGG
GGGAGAGCGATTACCCGGAAGAGGCGGCCCTCCTTCTGTCCTACCACCGA
CAGTTCTATGCCCTAGGGGAGCACTACAACAGCGTCGTGCCCGTGAAGGG
AGGGAGGGCAGAAGAGGAGAGTTAGAGGTAGACATAAACAAATAAAGCAT
TGATAACGAGAGGAATAAGGTGCCATGAG
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Coding sequence (CDS) from alignment at chr7:23711..25939+

>NO07G00040.1 ID=NO07G00040.1|Name=NO07G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr7:23711..25939+ (Nannochloropsis oceanica)
ATGTTTTTTGTCCTCTTAATGATTTTTTTTAATTGCACACGAGCGACGAC
TCACCTCGGTCATCATCCGATTTCGCCTCTACCTCCTCGTCTCCCTACAC
GCAGGCCTCACACGAGCCCAAGCGAGGCCATGATGAAAGAAGAGGAGGCC
GCGCGAGAGACAGTCGGGGAAACGCAGGAGGAGATGCGCAAGCGGCACAA
GAGCGAAGTGCGGCAACTGGAAGGGCAAACCCGGGCCATGCTGAAAAAGG
CCCCCAAGCCCAAGAAAGCCGAAGTCCAGGGCGAGGTGGCAAAGATGGAA
AGGGATATAGAGGAGCGGCACAAGAAGGAGCAGATGCGGTGGGCGGATGG
AGGAGGAGGAGGAGGAGGAAAGGAAGACGGTGTCAAAGGAGTTCGGTTCG
CGCCTGCCATCAACATCAAGAAGGGCGAGGGTGAGGGAAAAGCAGCAGGA
GGAGGGGGCAAGGGCAACAGGGATGGAGAGAGCGACGAGGAGGAAGATGA
GAGCGGGATGACCGAGGCGGAGAAGGTGGCGCGGAAACGAGACAAGGCCC
GGCGGAAGAAGGAACGCAAAGCCCAAAGAGAAGCAGAGCGCCAAGCGGAG
ATCGAGGAGGCGAAGAGGCACATCGTCCCTCCCCGCGAGATTGAGATGAA
ACAGCTCCTGTCCCTCCTATCCCCCATGGGCCTGGACATCCACGAGGTGG
CTGCCGATGGCCACTGCCTCTACCGATCTGTGGCGCACCAGCTCATCAGC
CACGGCCACCCGCCTCTGGACCACCAGCAAGTTCGACGAGCCGCGGCCCG
GCATATGAGAGAGTACCCCCAGGATTTCATCCCCTTCCTCGCTGGGGGCA
GGACGGAGGGAGGGGAGGAGGGAGGGCTGGAGGCGTATGCCTACAGGCTC
GAAGAGACGGCAGAGTGGGGAGGGGAGCTGGAGATACGAGCGCTGTGTCA
CGCCTACCAAAGACCCATCCGCGTGTTTGCGGCGGAGCAGCCTGTTTACA
CGATGGGGGAGAGCGATTACCCGGAAGAGGCGGCCCTCCTTCTGTCCTAC
CACCGACAGTTCTATGCCCTAGGGGAGCACTACAACAGCGTCGTGCCCGT
GAAGGGAGGGAGGGCAGAAGAGGAGAGTTAG
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Synonyms
Publications