NO06G04520, NO06G04520 (gene) Nannochloropsis oceanica

Overview
NameNO06G04520
Unique NameNO06G04520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2171
Alignment locationchr6:1277524..1279694 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1277524..1279694 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
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BLAST of NO06G04520 vs. NCBI_GenBank
Match: XP_009032638.1 (hypothetical protein AURANDRAFT_60729 [Aureococcus anophagefferens] >EGB13028.1 hypothetical protein AURANDRAFT_60729 [Aureococcus anophagefferens])

HSP 1 Score: 102.8 bits (255), Expect = 3.600e-18
Identity = 114/429 (26.57%), Postives = 177/429 (41.26%), Query Frame = 0 
Query:  131 EENGVAEFSSISK--SSFIIYCLDFETQSVVFMEMEPGANLLEEPFMDRGVRHLA--GKHVLVASFDTVEDYLRQKEAEKQQQQVGEDKKEHILWVWNTGRCGSTLLHRLLLTTGRVCSLSEPYWCEQLGRARARRQVKDATLRRLLRLCLLTDAQLLRQASQCPPSXXXXXXXXXXXXXLPHIISLNMKGM--GHHLLDLALEEFPSFSLSSTSKHLYLYRDVVSVVESLASVF----HTASPPFIRACLWVCPRWTLDLVIPYRSQRLQTWIKNEDLELSPLGRVGRWGVARELALAWLDSVCTWLEVMEGKXXXXXXKAEGAVERVVLKMEDFVDSSKRNKVVEHVLVFVFGKGVGEAVMKGEINMEKCLAVFDRHSQQGSRMQQSSNVTGKHFLTEAGQIHLRALLSSVPDWRVRTMRLPFKLLD 550
            E     +F+ + K  S F++Y    E   +VF+E +    L  EPF+DRG R L   G  V V SF+T + ++   E   +   + E +   + +V+N GRCGSTLLH+ L     V S SEP+WC+Q+G ARA    +D T + ++   L  +    R                          SLN K +  G  L D+   +FP       S   ++YR    V++S   +       A+    RA     P       +P                  P G   R  VA E    W D+V +WL +++ +        +     V ++ +DFV    R  V+   L  + G        + + ++ K +AVFD  SQ GS M + S      FLT+A +   R  ++       + ++LP K LD
Sbjct:   48 ESRRQCKFADVVKEGSPFVMYAT--EKDKLVFLEFDDKPALWREPFLDRGARKLVKEGSRVAVCSFETAKAWI---EEHNKYDVLLEGR---VCFVFNCGRCGSTLLHKALEALD-VQSSSEPHWCDQIG-ARAPSTPRDDTWQAIVLFHLSPNPDAKR-------------------------FSLNPKNINGGAFLADIVAVDFPK------STMCFMYRSAEKVMDSFGRLLCAGDDAATVEAERADWRSTPALMRVATLPMLPLYATAVEDAATAGSLPFGEASRAKVAMEFC-KWFDAVVSWLTLVQRRHDEQLD--DPVTRAVAIRYDDFVAKESREDVLVAALRHLGG------FFETDGDVAKAVAVFDVDSQAGSAMTRHS---AAPFLTDADRTLARRCVADA----AKVLKLPLKALD 419
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BLAST of NO06G04520 vs. NCBI_GenBank
Match: XP_005759855.1 (hypothetical protein EMIHUDRAFT_249522 [Emiliania huxleyi CCMP1516] >XP_005759963.1 hypothetical protein EMIHUDRAFT_218512 [Emiliania huxleyi CCMP1516] >EOD07426.1 hypothetical protein EMIHUDRAFT_249522 [Emiliania huxleyi CCMP1516] >EOD07534.1 hypothetical protein EMIHUDRAFT_218512 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 68.2 bits (165), Expect = 9.800e-8
Identity = 61/206 (29.61%), Postives = 82/206 (39.81%), Query Frame = 0 
Query:  149 YCLDFETQSVVFMEMEPGANLLEEPFMDRGVRHLAGKHVLVASFDTVEDYLRQKEAEKQQQQVGEDKKEHILWVWNTGRCGSTLLHRLLLTTGRVCSLSEPYWCEQLGRARARRQVKDATLRRLLRLCLLTDAQLLRQASQCPPSXXXXXXXXXXXXXLPHIISLNMKGMGHHLLDLALEEFPSFSLSSTSKHLYLYRDVVSVVES 355
            +CLD     ++ +E++  A +   PF DR V   A   V    F          EAE+    V   +    ++VW+ GRCGST LHRLL   G  C +SEP W + L R R         L R L L     A+ L   +                       ++  K  GH LL      FP+ S      HL++YRD   VV S
Sbjct:   64 FCLDVPNGRLILLEVDSLAKVHAAPFEDRAVPLHATGRVFALPF---------AEAERWASAVTPPR---AVFVWSVGRCGSTCLHRLLCAAGVGC-VSEPCWFDDLCRMRMSGNPPSKELVRALHLIHWASARRLFPKATA--------------------FAMKPKSYGHQLLVTVAAAFPAAS------HLFVYRDARQVVGS 230
[Close]
BLAST of NO06G04520 vs. NCBI_GenBank
Match: WP_012268141.1 (sulfotransferase family protein [Microcystis aeruginosa] >BAG05791.1 hypothetical protein MAE_59690 [Microcystis aeruginosa NIES-843])

HSP 1 Score: 65.5 bits (158), Expect = 6.400e-7
Identity = 58/220 (26.36%), Postives = 93/220 (42.27%), Query Frame = 0 
Query:  141 ISKSSFIIYCLDFETQSVVFMEMEPGANLLEEPFMDRGVRHLAGKHVLVA-SFDTVEDYLRQKEAEKQQQQVGEDKKEHILWVWNTGRCGSTLLHRLLLTTGRVCSLSEPYWCEQLGRARARRQVKDATLRRLLRLCLLTDAQLLRQASQCPPSXXXXXXXXXXXXXLPHIISLNMKGMGHHLLDLALEEFPSFSLSSTSKHLYLYRDVVSVVESLASVF 360
            +S+ +  +YCLD + + V+F+E     ++   PF+ +     A  H L+A S++T+           Q  Q  +     +++++  GRCGSTLL R+      V SLSEP    Q+   R   +  D         C L +  L+  A  C P+              P      ++G    + D+  + FP       SK ++LYRD   VVES    F
Sbjct:   40 VSQRNVSLYCLDHQQKQVIFVETPSDIDIFAYPFLYQAQFEYA--HRLIAISYETI----------CQLAQTFKIPDNQLIFIYPVGRCGSTLLSRIFHQVEYVISLSEPDIFSQIVGLRMPDKSND---------CQLAELLLVLTALLCKPNQLKN----------PSFYVFKLRGFCIEIADILHKVFPH------SKGIFLYRDAQKVVESCIRAF 222
The following BLAST results are available for this feature:
BLAST of NO06G04520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_009032638.13.600e-1826.57hypothetical protein AURANDRAFT_60729 [Aureococcus... [more]
XP_005759855.19.800e-829.61hypothetical protein EMIHUDRAFT_249522 [Emiliania ... [more]
WP_012268141.16.400e-726.36sulfotransferase family protein [Microcystis aerug... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL088nonsL088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR144ngnoR144Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000033NSK000033Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04520.1NO06G04520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642305gene_9626Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04520.1NO06G04520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04520 ID=NO06G04520|Name=NO06G04520|organism=Nannochloropsis oceanica|type=gene|length=2171bp
ATGACGACCCGCTCATCCTACCTCCTACCCCCCACGGTACCAAGGCAGGC
AGCAATGCTTTCCTTCGGGCTTCCCTTCCCCTTCTCCATTTCCCTAGTGC
AAGAATGTACCAGCTTCATTTGCTCGCCCGTGGTGTCCTTGGGCCTATGT
CTCATGGGTGCCTTCCTCTTCCACCAGTGGTACCCAAGCCAATCCCTCAA
GCCTAGTCCCCCAGCCAGCGGCGGCGCGGCGCTTTACCCCTTGGCATGGG
TCTACCGGAATGGAGACGAGTGGTGGGGTGGACTCAAGGCTATCCAGCGG
AATACCTCCCGCACTGCCCACTACAAGCCCTTGCGCGAGTTTTTGGAAGG
TACTTTCGACGAAGCGGAGGCGGCGGTGGGAGAGATGAAGGAGGAGAATG
GTGTGGCAGAGTTCTCCTCGATTTCAAAATCTTCCTTTATTATTTACTGC
CTGGATTTCGAGACGCAAAGTGTGGTGTTCATGGAGATGGAGCCAGGGGC
GAATTTGTTGGAGGAACCCTTTATGGATCGAGGTGTACGGCACCTGGCGG
GGAAGCACGTGCTGGTGGCATCATTTGATACCGTGGAGGACTACCTGCGG
CAGAAAGAAGCTGAAAAGCAGCAGCAACAGGTTGGAGAAGACAAGAAGGA
ACATATTTTGTGGGTTTGGAATACCGGGAGGTGCGGTTCTACCCTTCTTC
ACCGCCTCCTACTTACCACAGGCCGGGTCTGCTCTCTCTCGGAGCCCTAC
TGGTGTGAGCAACTTGGTCGGGCACGCGCCCGGCGACAAGTGAAAGACGC
GACTCTCCGCCGACTTCTGCGTCTCTGCCTCTTGACCGATGCTCAATTGC
TTCGTCAGGCGTCCCAGTGTCCTCCCTCCCACACCTCTTCATCGTCGTCC
TCCTCCTCCTCGCAATCCCTCCCCCATATCATTTCCCTGAATATGAAGGG
CATGGGACACCATCTTCTCGACCTTGCCTTGGAAGAGTTTCCGAGCTTTT
CCCTCTCTTCTACCTCCAAGCATCTGTACCTATACCGTGACGTTGTCTCC
GTCGTCGAGTCTCTGGCCAGCGTCTTCCACACCGCCTCCCCTCCCTTCAT
TCGTGCCTGCCTCTGGGTCTGCCCACGCTGGACTCTCGATCTCGTCATTC
CCTACCGGAGCCAAAGGCTGCAGACCTGGATAAAGAATGAGGATTTGGAG
CTCAGTCCCTTGGGGAGGGTGGGTCGGTGGGGTGTGGCGCGTGAATTGGC
TCTGGCCTGGTTGGACTCGGTGTGTACATGGCTGGAAGTGATGGAGGGGA
AGGAAGGGGGGGAGGGAGGGAAGGCGGAAGGAGCTGTGGAGCGTGTGGTG
CTCAAGATGGAGGACTTTGTTGACAGTAGTAAGAGAAATAAAGTAGTAGA
GCATGTGTTGGTCTTTGTTTTTGGGAAGGGAGTGGGGGAGGCGGTAATGA
AGGGGGAGATCAACATGGAGAAGTGCCTAGCGGTATTCGATCGCCACTCC
CAGCAGGGGTCGCGCATGCAGCAGTCATCCAATGTGACGGGCAAACACTT
CTTGACAGAGGCAGGACAGATTCACTTGCGGGCGTTATTGTCGAGTGTGC
CGGATTGGCGCGTGCGCACGATGCGATTGCCGTTCAAATTATTGGACGAC
GAGCAGCGGAGAGGGAAGAAAAAGGGTGAAGAGTTTGAGATAGGGGAGGG
AAAAGATGAGAAAGGGAAGGGGGAGAAGGGAAAGAAGGAGAAATAGAGGG
AGAGAATGACGAGTGCGGCGGAAGGGTAAGTTGACGAGGAACAAGACGAG
TGGCAATGGGGAGAGTGTGACGAAGTGAGATCCAAAGTGTCTCGTCTTCG
CGCGTATAGTCGAGGGAGTATGTATATATGTAGAATAGAAGTGGGAAACA
AGTATATAAAGGGGAAGCCAAAGGGAAGAGGGGAATATTGCGATAGGGCA
TAATTTTATCTCTTTTTGCTGTACTTGTCGTGTTTGGAAAGAAATGAAGA
GGATAGTAGATGGACAAGCGTCAAGTATCTGCTATTGCTCTTGCAAGCTC
TTGCCTCAATCGCTCTATGAGCGCACCAACACTGTTGTAAAGGGATGAAA
AAGAAATTAAGTGACACAGAGATGAGGAGTAAGAAAATCTCCACGTGTCT
CTGTGTCATGAAAAAGTCGCA
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protein sequence of NO06G04520.1

>NO06G04520.1-protein ID=NO06G04520.1-protein|Name=NO06G04520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MTTRSSYLLPPTVPRQAAMLSFGLPFPFSISLVQECTSFICSPVVSLGLC
LMGAFLFHQWYPSQSLKPSPPASGGAALYPLAWVYRNGDEWWGGLKAIQR
NTSRTAHYKPLREFLEGTFDEAEAAVGEMKEENGVAEFSSISKSSFIIYC
LDFETQSVVFMEMEPGANLLEEPFMDRGVRHLAGKHVLVASFDTVEDYLR
QKEAEKQQQQVGEDKKEHILWVWNTGRCGSTLLHRLLLTTGRVCSLSEPY
WCEQLGRARARRQVKDATLRRLLRLCLLTDAQLLRQASQCPPSHTSSSSS
SSSSQSLPHIISLNMKGMGHHLLDLALEEFPSFSLSSTSKHLYLYRDVVS
VVESLASVFHTASPPFIRACLWVCPRWTLDLVIPYRSQRLQTWIKNEDLE
LSPLGRVGRWGVARELALAWLDSVCTWLEVMEGKEGGEGGKAEGAVERVV
LKMEDFVDSSKRNKVVEHVLVFVFGKGVGEAVMKGEINMEKCLAVFDRHS
QQGSRMQQSSNVTGKHFLTEAGQIHLRALLSSVPDWRVRTMRLPFKLLDD
EQRRGKKKGEEFEIGEGKDEKGKGEKGKKEK*
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Synonyms
Publications