NO06G04520.1, NO06G04520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04520.1
Unique NameNO06G04520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2171
Alignment locationchr6:1277524..1279694 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1277524..1279694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04520.1 vs.
Match: XP_009032638.1 (hypothetical protein AURANDRAFT_60729 [Aureococcus anophagefferens]; EGB13028.1 hypothetical protein AURANDRAFT_60729 [Aureococcus anophagefferens])

HSP 1 Score: 102.4 bits (254), Expect = 4.700e-18
Identity = 114/429 (26.57%), Postives = 178/429 (41.49%), Query Frame = 0 
Query:  131 EENGVAEFSSISK--SSFIIYCLDFETQSVVFMEMEPGANLLEEPFMDRGVRHLA--GKHVLVASFDTVEDYLRQKEAEKQQQQVGEDKKEHILWVWNTGRCGSTLLHRLLLTTGRVCSLSEPYWCEQLGRARARRQVKDATLRRLLRLCLLTDAQLLRQASQCPPSHTSSSSSSSSSQSLPHIISLNMKGM--GHHLLDLALEEFPSFSLSSTSKHLYLYRDVVSVVESLASVF----HTASPPFIRACLWVCPRWTLDLVIPYRSQRLQTWIKNEDLELSPLGRVGRWGVARELALAWLDSVCTWLEVMEGKEGGEGGKAEGAVERVVLKMEDFVDSSKRNKVVEHVLVFVFGKGVGEAVMKGEINMEKCLAVFDRHSQQGSRMQQSSNVTGKHFLTEAGQIHLRALLSSVPDWRVRTMRLPFKLLD 550
            E     +F+ + K  S F++Y    E   +VF+E +    L  EPF+DRG R L   G  V V SF+T + ++   E   +   + E +   + +V+N GRCGSTLLH+ L     V S SEP+WC+Q+G ARA    +D T + ++   L  +    R                          SLN K +  G  L D+   +FP       S   ++YR    V++S   +       A+    RA     P       +P                  P G   R  VA E    W D+V +WL +++ +   +    +     V ++ +DFV    R  V+   L  + G        + + ++ K +AVFD  SQ GS M + S      FLT+A +   R  ++       + ++LP K LD
Sbjct:   48 ESRRQCKFADVVKEGSPFVMYAT--EKDKLVFLEFDDKPALWREPFLDRGARKLVKEGSRVAVCSFETAKAWI---EEHNKYDVLLEGR---VCFVFNCGRCGSTLLHKALEALD-VQSSSEPHWCDQIG-ARAPSTPRDDTWQAIVLFHLSPNPDAKR-------------------------FSLNPKNINGGAFLADIVAVDFPK------STMCFMYRSAEKVMDSFGRLLCAGDDAATVEAERADWRSTPALMRVATLPMLPLYATAVEDAATAGSLPFGEASRAKVAMEFC-KWFDAVVSWLTLVQRRHDEQ--LDDPVTRAVAIRYDDFVAKESREDVLVAALRHLGG------FFETDGDVAKAVAVFDVDSQAGSAMTRHS---AAPFLTDADRTLARRCVADA----AKVLKLPLKALD 419
The following BLAST results are available for this feature:
BLAST of NO06G04520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009032638.14.700e-1826.57hypothetical protein AURANDRAFT_60729 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04520NO06G04520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04520.1NO06G04520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04520.1.cds1NO06G04520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04520.1 ID=NO06G04520.1|Name=NO06G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp
ATGACGACCCGCTCATCCTACCTCCTACCCCCCACGGTACCAAGGCAGGC
AGCAATGCTTTCCTTCGGGCTTCCCTTCCCCTTCTCCATTTCCCTAGTGC
AAGAATGTACCAGCTTCATTTGCTCGCCCGTGGTGTCCTTGGGCCTATGT
CTCATGGGTGCCTTCCTCTTCCACCAGTGGTACCCAAGCCAATCCCTCAA
GCCTAGTCCCCCAGCCAGCGGCGGCGCGGCGCTTTACCCCTTGGCATGGG
TCTACCGGAATGGAGACGAGTGGTGGGGTGGACTCAAGGCTATCCAGCGG
AATACCTCCCGCACTGCCCACTACAAGCCCTTGCGCGAGTTTTTGGAAGG
TACTTTCGACGAAGCGGAGGCGGCGGTGGGAGAGATGAAGGAGGAGAATG
GTGTGGCAGAGTTCTCCTCGATTTCAAAATCTTCCTTTATTATTTACTGC
CTGGATTTCGAGACGCAAAGTGTGGTGTTCATGGAGATGGAGCCAGGGGC
GAATTTGTTGGAGGAACCCTTTATGGATCGAGGTGTACGGCACCTGGCGG
GGAAGCACGTGCTGGTGGCATCATTTGATACCGTGGAGGACTACCTGCGG
CAGAAAGAAGCTGAAAAGCAGCAGCAACAGGTTGGAGAAGACAAGAAGGA
ACATATTTTGTGGGTTTGGAATACCGGGAGGTGCGGTTCTACCCTTCTTC
ACCGCCTCCTACTTACCACAGGCCGGGTCTGCTCTCTCTCGGAGCCCTAC
TGGTGTGAGCAACTTGGTCGGGCACGCGCCCGGCGACAAGTGAAAGACGC
GACTCTCCGCCGACTTCTGCGTCTCTGCCTCTTGACCGATGCTCAATTGC
TTCGTCAGGCGTCCCAGTGTCCTCCCTCCCACACCTCTTCATCGTCGTCC
TCCTCCTCCTCGCAATCCCTCCCCCATATCATTTCCCTGAATATGAAGGG
CATGGGACACCATCTTCTCGACCTTGCCTTGGAAGAGTTTCCGAGCTTTT
CCCTCTCTTCTACCTCCAAGCATCTGTACCTATACCGTGACGTTGTCTCC
GTCGTCGAGTCTCTGGCCAGCGTCTTCCACACCGCCTCCCCTCCCTTCAT
TCGTGCCTGCCTCTGGGTCTGCCCACGCTGGACTCTCGATCTCGTCATTC
CCTACCGGAGCCAAAGGCTGCAGACCTGGATAAAGAATGAGGATTTGGAG
CTCAGTCCCTTGGGGAGGGTGGGTCGGTGGGGTGTGGCGCGTGAATTGGC
TCTGGCCTGGTTGGACTCGGTGTGTACATGGCTGGAAGTGATGGAGGGGA
AGGAAGGGGGGGAGGGAGGGAAGGCGGAAGGAGCTGTGGAGCGTGTGGTG
CTCAAGATGGAGGACTTTGTTGACAGTAGTAAGAGAAATAAAGTAGTAGA
GCATGTGTTGGTCTTTGTTTTTGGGAAGGGAGTGGGGGAGGCGGTAATGA
AGGGGGAGATCAACATGGAGAAGTGCCTAGCGGTATTCGATCGCCACTCC
CAGCAGGGGTCGCGCATGCAGCAGTCATCCAATGTGACGGGCAAACACTT
CTTGACAGAGGCAGGACAGATTCACTTGCGGGCGTTATTGTCGAGTGTGC
CGGATTGGCGCGTGCGCACGATGCGATTGCCGTTCAAATTATTGGACGAC
GAGCAGCGGAGAGGGAAGAAAAAGGGTGAAGAGTTTGAGATAGGGGAGGG
AAAAGATGAGAAAGGGAAGGGGGAGAAGGGAAAGAAGGAGAAATAGAGGG
AGAGAATGACGAGTGCGGCGGAAGGGTAAGTTGACGAGGAACAAGACGAG
TGGCAATGGGGAGAGTGTGACGAAGTGAGATCCAAAGTGTCTCGTCTTCG
CGCGTATAGTCGAGGGAGTATGTATATATGTAGAATAGAAGTGGGAAACA
AGTATATAAAGGGGAAGCCAAAGGGAAGAGGGGAATATTGCGATAGGGCA
TAATTTTATCTCTTTTTGCTGTACTTGTCGTGTTTGGAAAGAAATGAAGA
GGATAGTAGATGGACAAGCGTCAAGTATCTGCTATTGCTCTTGCAAGCTC
TTGCCTCAATCGCTCTATGAGCGCACCAACACTGTTGTAAAGGGATGAAA
AAGAAATTAAGTGACACAGAGATGAGGAGTAAGAAAATCTCCACGTGTCT
CTGTGTCATGAAAAAGTCGCA
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protein sequence of NO06G04520.1

>NO06G04520.1-protein ID=NO06G04520.1-protein|Name=NO06G04520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MTTRSSYLLPPTVPRQAAMLSFGLPFPFSISLVQECTSFICSPVVSLGLC
LMGAFLFHQWYPSQSLKPSPPASGGAALYPLAWVYRNGDEWWGGLKAIQR
NTSRTAHYKPLREFLEGTFDEAEAAVGEMKEENGVAEFSSISKSSFIIYC
LDFETQSVVFMEMEPGANLLEEPFMDRGVRHLAGKHVLVASFDTVEDYLR
QKEAEKQQQQVGEDKKEHILWVWNTGRCGSTLLHRLLLTTGRVCSLSEPY
WCEQLGRARARRQVKDATLRRLLRLCLLTDAQLLRQASQCPPSHTSSSSS
SSSSQSLPHIISLNMKGMGHHLLDLALEEFPSFSLSSTSKHLYLYRDVVS
VVESLASVFHTASPPFIRACLWVCPRWTLDLVIPYRSQRLQTWIKNEDLE
LSPLGRVGRWGVARELALAWLDSVCTWLEVMEGKEGGEGGKAEGAVERVV
LKMEDFVDSSKRNKVVEHVLVFVFGKGVGEAVMKGEINMEKCLAVFDRHS
QQGSRMQQSSNVTGKHFLTEAGQIHLRALLSSVPDWRVRTMRLPFKLLDD
EQRRGKKKGEEFEIGEGKDEKGKGEKGKKEK*
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mRNA from alignment at chr6:1277524..1279694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04520.1 ID=NO06G04520.1|Name=NO06G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp|location=Sequence derived from alignment at chr6:1277524..1279694- (Nannochloropsis oceanica)
ATGACGACCCGCTCATCCTACCTCCTACCCCCCACGGTACCAAGGCAGGC
AGCAATGCTTTCCTTCGGGCTTCCCTTCCCCTTCTCCATTTCCCTAGTGC
AAGAATGTACCAGCTTCATTTGCTCGCCCGTGGTGTCCTTGGGCCTATGT
CTCATGGGTGCCTTCCTCTTCCACCAGTGGTACCCAAGCCAATCCCTCAA
GCCTAGTCCCCCAGCCAGCGGCGGCGCGGCGCTTTACCCCTTGGCATGGG
TCTACCGGAATGGAGACGAGTGGTGGGGTGGACTCAAGGCTATCCAGCGG
AATACCTCCCGCACTGCCCACTACAAGCCCTTGCGCGAGTTTTTGGAAGG
TACTTTCGACGAAGCGGAGGCGGCGGTGGGAGAGATGAAGGAGGAGAATG
GTGTGGCAGAGTTCTCCTCGATTTCAAAATCTTCCTTTATTATTTACTGC
CTGGATTTCGAGACGCAAAGTGTGGTGTTCATGGAGATGGAGCCAGGGGC
GAATTTGTTGGAGGAACCCTTTATGGATCGAGGTGTACGGCACCTGGCGG
GGAAGCACGTGCTGGTGGCATCATTTGATACCGTGGAGGACTACCTGCGG
CAGAAAGAAGCTGAAAAGCAGCAGCAACAGGTTGGAGAAGACAAGAAGGA
ACATATTTTGTGGGTTTGGAATACCGGGAGGTGCGGTTCTACCCTTCTTC
ACCGCCTCCTACTTACCACAGGCCGGGTCTGCTCTCTCTCGGAGCCCTAC
TGGTGTGAGCAACTTGGTCGGGCACGCGCCCGGCGACAAGTGAAAGACGC
GACTCTCCGCCGACTTCTGCGTCTCTGCCTCTTGACCGATGCTCAATTGC
TTCGTCAGGCGTCCCAGTGTCCTCCCTCCCACACCTCTTCATCGTCGTCC
TCCTCCTCCTCGCAATCCCTCCCCCATATCATTTCCCTGAATATGAAGGG
CATGGGACACCATCTTCTCGACCTTGCCTTGGAAGAGTTTCCGAGCTTTT
CCCTCTCTTCTACCTCCAAGCATCTGTACCTATACCGTGACGTTGTCTCC
GTCGTCGAGTCTCTGGCCAGCGTCTTCCACACCGCCTCCCCTCCCTTCAT
TCGTGCCTGCCTCTGGGTCTGCCCACGCTGGACTCTCGATCTCGTCATTC
CCTACCGGAGCCAAAGGCTGCAGACCTGGATAAAGAATGAGGATTTGGAG
CTCAGTCCCTTGGGGAGGGTGGGTCGGTGGGGTGTGGCGCGTGAATTGGC
TCTGGCCTGGTTGGACTCGGTGTGTACATGGCTGGAAGTGATGGAGGGGA
AGGAAGGGGGGGAGGGAGGGAAGGCGGAAGGAGCTGTGGAGCGTGTGGTG
CTCAAGATGGAGGACTTTGTTGACAGTAGTAAGAGAAATAAAGTAGTAGA
GCATGTGTTGGTCTTTGTTTTTGGGAAGGGAGTGGGGGAGGCGGTAATGA
AGGGGGAGATCAACATGGAGAAGTGCCTAGCGGTATTCGATCGCCACTCC
CAGCAGGGGTCGCGCATGCAGCAGTCATCCAATGTGACGGGCAAACACTT
CTTGACAGAGGCAGGACAGATTCACTTGCGGGCGTTATTGTCGAGTGTGC
CGGATTGGCGCGTGCGCACGATGCGATTGCCGTTCAAATTATTGGACGAC
GAGCAGCGGAGAGGGAAGAAAAAGGGTGAAGAGTTTGAGATAGGGGAGGG
AAAAGATGAGAAAGGGAAGGGGGAGAAGGGAAAGAAGGAGAAATAGAGGG
AGAGAATGACGAGTGCGGCGGAAGGGTAAGTTGACGAGGAACAAGACGAG
TGGCAATGGGGAGAGTGTGACGAAGTGAGATCCAAAGTGTCTCGTCTTCG
CGCGTATAGTCGAGGGAGTATGTATATATGTAGAATAGAAGTGGGAAACA
AGTATATAAAGGGGAAGCCAAAGGGAAGAGGGGAATATTGCGATAGGGCA
TAATTTTATCTCTTTTTGCTGTACTTGTCGTGTTTGGAAAGAAATGAAGA
GGATAGTAGATGGACAAGCGTCAAGTATCTGCTATTGCTCTTGCAAGCTC
TTGCCTCAATCGCTCTATGAGCGCACCAACACTGTTGTAAAGGGATGAAA
AAGAAATTAAGTGACACAGAGATGAGGAGTAAGAAAATCTCCACGTGTCT
CTGTGTCATGAAAAAGTCGCA
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Coding sequence (CDS) from alignment at chr6:1277524..1279694-

>NO06G04520.1 ID=NO06G04520.1|Name=NO06G04520.1|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at chr6:1277524..1279694- (Nannochloropsis oceanica)
ATGACGACCCGCTCATCCTACCTCCTACCCCCCACGGTACCAAGGCAGGC
AGCAATGCTTTCCTTCGGGCTTCCCTTCCCCTTCTCCATTTCCCTAGTGC
AAGAATGTACCAGCTTCATTTGCTCGCCCGTGGTGTCCTTGGGCCTATGT
CTCATGGGTGCCTTCCTCTTCCACCAGTGGTACCCAAGCCAATCCCTCAA
GCCTAGTCCCCCAGCCAGCGGCGGCGCGGCGCTTTACCCCTTGGCATGGG
TCTACCGGAATGGAGACGAGTGGTGGGGTGGACTCAAGGCTATCCAGCGG
AATACCTCCCGCACTGCCCACTACAAGCCCTTGCGCGAGTTTTTGGAAGG
TACTTTCGACGAAGCGGAGGCGGCGGTGGGAGAGATGAAGGAGGAGAATG
GTGTGGCAGAGTTCTCCTCGATTTCAAAATCTTCCTTTATTATTTACTGC
CTGGATTTCGAGACGCAAAGTGTGGTGTTCATGGAGATGGAGCCAGGGGC
GAATTTGTTGGAGGAACCCTTTATGGATCGAGGTGTACGGCACCTGGCGG
GGAAGCACGTGCTGGTGGCATCATTTGATACCGTGGAGGACTACCTGCGG
CAGAAAGAAGCTGAAAAGCAGCAGCAACAGGTTGGAGAAGACAAGAAGGA
ACATATTTTGTGGGTTTGGAATACCGGGAGGTGCGGTTCTACCCTTCTTC
ACCGCCTCCTACTTACCACAGGCCGGGTCTGCTCTCTCTCGGAGCCCTAC
TGGTGTGAGCAACTTGGTCGGGCACGCGCCCGGCGACAAGTGAAAGACGC
GACTCTCCGCCGACTTCTGCGTCTCTGCCTCTTGACCGATGCTCAATTGC
TTCGTCAGGCGTCCCAGTGTCCTCCCTCCCACACCTCTTCATCGTCGTCC
TCCTCCTCCTCGCAATCCCTCCCCCATATCATTTCCCTGAATATGAAGGG
CATGGGACACCATCTTCTCGACCTTGCCTTGGAAGAGTTTCCGAGCTTTT
CCCTCTCTTCTACCTCCAAGCATCTGTACCTATACCGTGACGTTGTCTCC
GTCGTCGAGTCTCTGGCCAGCGTCTTCCACACCGCCTCCCCTCCCTTCAT
TCGTGCCTGCCTCTGGGTCTGCCCACGCTGGACTCTCGATCTCGTCATTC
CCTACCGGAGCCAAAGGCTGCAGACCTGGATAAAGAATGAGGATTTGGAG
CTCAGTCCCTTGGGGAGGGTGGGTCGGTGGGGTGTGGCGCGTGAATTGGC
TCTGGCCTGGTTGGACTCGGTGTGTACATGGCTGGAAGTGATGGAGGGGA
AGGAAGGGGGGGAGGGAGGGAAGGCGGAAGGAGCTGTGGAGCGTGTGGTG
CTCAAGATGGAGGACTTTGTTGACAGTAGTAAGAGAAATAAAGTAGTAGA
GCATGTGTTGGTCTTTGTTTTTGGGAAGGGAGTGGGGGAGGCGGTAATGA
AGGGGGAGATCAACATGGAGAAGTGCCTAGCGGTATTCGATCGCCACTCC
CAGCAGGGGTCGCGCATGCAGCAGTCATCCAATGTGACGGGCAAACACTT
CTTGACAGAGGCAGGACAGATTCACTTGCGGGCGTTATTGTCGAGTGTGC
CGGATTGGCGCGTGCGCACGATGCGATTGCCGTTCAAATTATTGGACGAC
GAGCAGCGGAGAGGGAAGAAAAAGGGTGAAGAGTTTGAGATAGGGGAGGG
AAAAGATGAGAAAGGGAAGGGGGAGAAGGGAAAGAAGGAGAAATAG
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Synonyms
Publications