NO06G04500, NO06G04500 (gene) Nannochloropsis oceanica

Overview
NameNO06G04500
Unique NameNO06G04500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4265
Alignment locationchr6:1268345..1272609 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1268345..1272609 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036063Smr_dom_sf
IPR003892CUE
IPR002625Smr/MutS2_C
Homology
The following BLAST results are available for this feature:
BLAST of NO06G04500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL088nonsL088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR144ngnoR144Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000029NSK000029Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04500.3NO06G04500.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G04500.2NO06G04500.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G04500.1NO06G04500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04500.3NO06G04500.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G04500.2NO06G04500.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G04500.1NO06G04500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04500 ID=NO06G04500|Name=NO06G04500|organism=Nannochloropsis oceanica|type=gene|length=4265bp
AGGCGCCGGAAACTAGGCATCAGTCGGACCTGCATCCTTGACCTTATAGC
GTCTTCCCTCTTGTGGCGGCCACACGTTTCCCAGAACTAAAAGATGGCCA
GAAAGAAGAAACATCACCACCACCACCAGGACAAGGAGTATAGCGAGCAG
GATATTGACGCCTTACATGAAATGTTAGATGGAAAAGTGCCGTGGGGCAC
GGTAAGGGCGGTTTTATCACGCGAGGATGGAGACGTGGCCAGGTAGGAAG
GGAGGGTGGATGGGACATTAGGGACAGATAGAAGATGGGCACGCAAAAAT
CGCATCTTGAAAGAACCGATGAAGCAAATCTTAATTTACTTGATGGAAAA
GTATAGATTGTACACGTAAAGCCGCCCTGTACCGAAGGGTAAGAGGGAGG
GAAGGCGGAAGCAGGGATGAATTGATGTGAGAAATTGCATGCTTATCACT
TACTCTTTTCAATGTATGCAGAGCTCTGGGCATATTGCTCCTTATAACAG
ATGAAGGTAGCAGCGCTGTGGGATGCGACTCCGGCGCTTCGGCTGCCGGT
GCCGCCGCCGCTGCAGCTGCTGCTGCGGAGGTGGAAAAGGTGGAAGGAGA
GGTGGGGAAGGAGGGAGGGAAGGAGAGCAGCAAAGAGGTTCGGGACGAGG
AGCAGGAGCAGGAAAACGACGACAGTGCTGCCAATTTATCCTCAGCGGCG
TCAAAAATTACCAACCCTTCTTTCATAACTCCTCCTCATCTTCCTTCTTC
TCCCTTCCCTCCCTCAGTCGCCCGCCCCTCACCGGGAGTGGCGGGACGGA
GGGAAGGCCTGAGCTTAAAGGCGTGGGATGAACTGTGCCGGATCTTCGAA
GGCGTTCTGTCGCTAGATGCTCTGCACAGAGTGTACGAGGAGGCAGAGGG
GCTGGAGGGAGCAGTCGAGGTAGGAAGGGAGAGAGGAGAGAGGAGGGGAG
GAGGGAAAGGAGGGTGGAAGCTGTGGGCGATGGTTTGATCTCTCCGCATA
CGACTGACAGGAGGTGGAACGGATGCTGCAGCAGCAAGACGAGGTCGAGG
AATCAGGGGATGACGACAACGAGGGCCTGGTGGGAGGAGGGGGGAGCAGA
GGAGAAGGGGGGGGGGGAAGAGGAGGAGGGGAAGAGGAGGAAAAGCTCCG
GCCGTCTTCCTTCTCGACATGTCGTCCCGTCATCCACAAACATCAGAAGG
AGATCGAAAAAATAAACGAGCTAGAAGACAAGAAAGACGACAAAGAGAAA
AGAGGAACAAGAAAAGAAAATGAAGAGGAAGAGGAGGAGGAAGGGGAGGA
GGAGGAGGAAGAGGAGAAGGAGAAGGAGGAGGAGGAGGCGTTGGCGTCCC
TGAGGGCAATTTTCCCCTCCCTTCCCCCAGACGTCTTGAAGTCGATTCTC
GCCCAGCATTCAGgtactcccgtccctccctccctccctccctccctccc
tccctctttccttccttcccccgctccttccctgcatgtaaattgtccat
attctcgttcttttcttggctctctgtcttcccatcttcctccatctccc
tctcacattttccttcctccttcttcccctccgtctctgccttcctttca
agGCAATGCCGACGCGGCAGCTTATGACCTGGTCGGTGGCTCTCCTCCCT
CCTCCTCTTTCTCCCCCTCCTCTTCCTCCTTCTCTTCCGACACCAGCTAC
CACTGTACTGCAGgtaggtgggtgggtggggagggagggcgcgagggaga
gtgggagggggggaagatggaagcatgatgatgccactcgtctcttgcca
atttctcatgtgattgctgttgctcccttctcctccttctttctctcttt
atcttccactcccatcttcttcctccctctagACCTGCGGCAAGGCCCCA
AAGGCGGGAGTCAAAAGGCGCGATCCGGCCGACGCGTGCTCTGGGACGGC
AGCACCACGAACATGCTCCCCTCTACCTCCCTTCCTCCCTCCCTGCCCTC
CTCCAACTCGCCCTGGGCGCCCGCCTCCTCGTCTCCCGCCCTCCTTCCTC
CTCTCTCACTCCCTTCTTGTCCCATTGCCAGCCACTCTGCTGCCTCCTTT
CCCTCCCTCCCTCCCCTCTCCTACCCGCGTTCCTCGTCCTCGTCCTCGCC
TTCTCTCTCCTTACCTCGCGCACCAACCGCGAGAGGAAGGCGGCTCGGAA
GAGGGAGGGAGGAAAGGAGGGAGGGAGGGAGGGAGGGTGAGGTGGGCGAG
CAGCGGTTGCGGGCGCAGGGGCTTGCTTGGTTGGAGGAGGTTTACGGACC
GGCCAAAGGCGGATTTGACAGGGCATTGATCAGATCGTTGCTGCTGGAGg
tgaaatgggagggagagagggagggagggagaggcggaagaggtgggagg
gaagacccgcgctgtcaagctagataggagaaggaggagggagtatcatg
tggccctcccttcctccctcccctcctttccattccctctttccttccct
ccctccctcgatgcgcaacgacggcgacacagcagcagccgggtcggcct
ctctggacgaactggatcccgcccctgtcgagcataccccttccacactc
ccatcctccctccctccctctctccctccctcctcttcagGTCCACAACG
GCGACACGGCTGCGACTGAAGCCTCCCTCCACGAACTGGATCCGAGCCGC
TCGTACCAATGCCGGCGAGGCTGGGAGGCAAAGAGGACAGAGgtgaggag
gaggatggggggggaagggagggcgggcgagcagagggcttcaaggaaga
gggagagtggagaaggagggagggagagtgggagagcaaagtagagcgta
gagggcttatatcgagccttttctgcctgcattaaactacagGCCTCGCT
CCTGACGACAATCATGTTGCCACTTCGTTCCTTTCCCTCTTCTCCCGGAC
CTGCGTCCCCCCCTCCTCCTCCCCGCCCGTGCTCGCCCCTCTCTGCCTCA
TACCCGCGGACAGGGGGGGGCAGGAGCAAGGGAGGGAGAGAGATGGCGAT
GGCCTATCGGCAAGCAGCAGCGAGGGAACAGGAGGCCATGATGGCCGATT
TCAGAAGGGCGGCGACTGCGTACCAGAGCAAAACGTCCTCAGCTGgtagg
gagggagtgagagagtgagggaatgagggagggagggaggaaagaatgaa
aaagaatacactgtcatttaatgtttgtccattcacagCACTGACGGCGG
CCTCGGGCTACGAGCACCGCAAACGCATGCAAGAATATCACGCCAGgtgc
agagggagggaaagagggtgggagggagatagggacgcgaacactttacc
tgctgcccacaaacaatgcgtgtggatgttaatccttttctcttcctttc
tcctcctccagGGCTGCCTGCGCCCTCCTGCACGAGGTGTGCCCTGCCGT
GGAGGTCGGGATGGAGGAGGAGGAGGAGGAAGGAGGCAGGAGGGGCGGTG
GAAGGGTGGTGGCCACGAGAGTGAATGCACGgtgaggagggagggaggga
cggagggaggtgtttaaggaggccagaagaggaaacaatgtttcaaagag
aagacaatggctgatagctgccttcccttcctccaccctctctccctctc
ccctctccttcttccttcctcagcctccttccttccttcctcctagcgga
actctaatcacccccctcctctacccctccctccctcgcttcctcccccc
cctgcccccagCCTCCTTTCTGATCCCTCCTGTCTGACCATTGACCTGCA
CAGCTTCCGGGTCCCTGAGGCTCTTTCCCTCCTCCACTCTCTCCTTGCCC
TCCGCCCTCCCTCCTTCCCTCCCTCCCTCCGGACGTTGCGGCTCATCACG
GGCAAGGGCACGCATTCTCGGGGGGGCAAGTCCAGGCTTGGGCCCGCGGT
GCTTGCAGCGCTACAGCGGCAGGAAGGGGGAGAGGAAGGGCGGGATGGAG
GGAGGAAGATTACCAGCGTCTCGATGGACTCGCCGGGGGGGGCGGTGGTG
GTGCACTGGAGCAGCCGATGACTGCCCACCAAGTGAGAAAAATGGAAGAG
TGCGAGAAACAGCGGCGGAAAGCCGCGCCCAAAAAGTATGTGATATGCTG
TGTACAGAATACATGACAAGACGTCACCCCAGCCGAAAAGCATAAATGAC
CCTACAATGGAGGAGAGAGAACATGGGAATGAAGCAGCGGACCAGCGAGT
CCTTCACAATTCGGA
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protein sequence of NO06G04500.3

>NO06G04500.3-protein ID=NO06G04500.3-protein|Name=NO06G04500.3|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MLQQQDEVEESGDDDNEGLVGGGGSRGEGGGGRGGGEEEEKLRPSSFSTC
RPVIHKHQKEIEKINELEDKKDDKEKRGTRKENEEEEEEEGEEEEEEEKE
KEEEEALASLRAIFPSLPPDVLKSILAQHSGNADAAAYDLVGGSPPSSSF
SPSSSSFSSDTSYHCTADLRQGPKGGSQKARSGRRVLWDGSTTNMLPSTS
LPPSLPSSNSPWAPASSSPALLPPLSLPSCPIASHSAASFPSLPPLSYPR
SSSSSSPSLSLPRAPTARGRRLGRGREERREGGREGEVGEQRLRAQGLAW
LEEVYGPAKGGFDRALIRSLLLEVHNGDTAATEASLHELDPSRSYQCRRG
WEAKRTEASLLTTIMLPLRSFPSSPGPASPPPPPRPCSPLSASYPRTGGG
RSKGGREMAMAYRQAAAREQEAMMADFRRAATAYQSKTSSAALTAASGYE
HRKRMQEYHARAACALLHEVCPAVEVGMEEEEEEGGRRGGGRVVATRVNA
RLLSDPSCLTIDLHSFRVPEALSLLHSLLALRPPSFPPSLRTLRLITGKG
THSRGGKSRLGPAVLAALQRQEGGEEGRDGGRKITSVSMDSPGGAVVVHW
SSR*
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protein sequence of NO06G04500.2

>NO06G04500.2-protein ID=NO06G04500.2-protein|Name=NO06G04500.2|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MLQQQDEVEESGDDDNEGLVGGGGSRGEGGGGRGGGEEEEKLRPSSFSTC
RPVIHKHQKEIEKINELEDKKDDKEKRGTRKENEEEEEEEGEEEEEEEKE
KEEEEALASLRAIFPSLPPDVLKSILAQHSGNADAAAYDLVGGSPPSSSF
SPSSSSFSSDTSYHCTADLRQGPKGGSQKARSGRRVLWDGSTTNMLPSTS
LPPSLPSSNSPWAPASSSPALLPPLSLPSCPIASHSAASFPSLPPLSYPR
SSSSSSPSLSLPRAPTARGRRLGRGREERREGGREGEVGEQRLRAQGLAW
LEEVYGPAKGGFDRALIRSLLLEVHNGDTAATEASLHELDPSRSYQCRRG
WEAKRTEASLLTTIMLPLRSFPSSPGPASPPPPPRPCSPLSASYPRTGGG
RSKGGREMAMAYRQAAAREQEAMMADFRRAATAYQSKTSSAALTAASGYE
HRKRMQEYHARAACALLHEVCPAVEVGMEEEEEEGGRRGGGRVVATRVNA
RLLSDPSCLTIDLHSFRVPEALSLLHSLLALRPPSFPPSLRTLRLITGKG
THSRGGKSRLGPAVLAALQRQEGGEEGRDGGRKITSVSMDSPGGAVVVHW
SSR*
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protein sequence of NO06G04500.1

>NO06G04500.1-protein ID=NO06G04500.1-protein|Name=NO06G04500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=807bp
MARKKKHHHHHQDKEYSEQDIDALHEMLDGKVPWGTVRAVLSREDGDVAR
ALGILLLITDEGSSAVGCDSGASAAGAAAAAAAAAEVEKVEGEVGKEGGK
ESSKEVRDEEQEQENDDSAANLSSAASKITNPSFITPPHLPSSPFPPSVA
RPSPGVAGRREGLSLKAWDELCRIFEGVLSLDALHRVYEEAEGLEGAVEE
VERMLQQQDEVEESGDDDNEGLVGGGGSRGEGGGGRGGGEEEEKLRPSSF
STCRPVIHKHQKEIEKINELEDKKDDKEKRGTRKENEEEEEEEGEEEEEE
EKEKEEEEALASLRAIFPSLPPDVLKSILAQHSGNADAAAYDLVGGSPPS
SSFSPSSSSFSSDTSYHCTADLRQGPKGGSQKARSGRRVLWDGSTTNMLP
STSLPPSLPSSNSPWAPASSSPALLPPLSLPSCPIASHSAASFPSLPPLS
YPRSSSSSSPSLSLPRAPTARGRRLGRGREERREGGREGEVGEQRLRAQG
LAWLEEVYGPAKGGFDRALIRSLLLEVHNGDTAATEASLHELDPSRSYQC
RRGWEAKRTEASLLTTIMLPLRSFPSSPGPASPPPPPRPCSPLSASYPRT
GGGRSKGGREMAMAYRQAAAREQEAMMADFRRAATAYQSKTSSAALTAAS
GYEHRKRMQEYHARAACALLHEVCPAVEVGMEEEEEEGGRRGGGRVVATR
VNARLLSDPSCLTIDLHSFRVPEALSLLHSLLALRPPSFPPSLRTLRLIT
GKGTHSRGGKSRLGPAVLAALQRQEGGEEGRDGGRKITSVSMDSPGGAVV
VHWSSR*
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Synonyms
Publications