NO06G04460, NO06G04460 (gene) Nannochloropsis oceanica

Overview
NameNO06G04460
Unique NameNO06G04460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1918
Alignment locationchr6:1252968..1254885 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1252968..1254885 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G04460 vs. NCBI_GenBank
Match: XP_005853940.1 (hypothetical protein NGA_0427600 [Nannochloropsis gaditana CCMP526] >EKU22417.1 hypothetical protein NGA_0427600 [Nannochloropsis gaditana CCMP526] >EWM26437.1 hypothetical protein Naga_100344g5 [Nannochloropsis gaditana])

HSP 1 Score: 142.9 bits (359), Expect = 1.100e-30
Identity = 79/145 (54.48%), Postives = 93/145 (64.14%), Query Frame = 0 
Query:   34 SDRIEAFAIPDPIRSRRRSVTRTRITMTQAPRLKDCEQLTTRAHTLFQNAAAVTGGVLFGSAISSRGGITKAQAALDPIVSQTYMEQVRDAIPVKTIRGVWRIREYRDKSTGTLCKGRLKMRGFVEEPNKGTLEYMGCNDSKGKG 179
            SD IEAF +P     R  S     ++ T A           R   L    A V GG+  G    + GG T+AQA+ D +++Q+Y+EQVRDAIPVKTIRGVWRIREYRD+    LCKGR+KMRGFVEEPNKGTLEY GCND KGKG
Sbjct:   43 SDGIEAFVLPVSALKRPSSRAMVHLSPTDA-------DTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQAS-DQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQ-PLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKG 178
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BLAST of NO06G04460 vs. NCBI_GenBank
Match: EWM26438.1 (hypothetical protein Naga_100344g5 [Nannochloropsis gaditana])

HSP 1 Score: 142.9 bits (359), Expect = 1.100e-30
Identity = 79/145 (54.48%), Postives = 93/145 (64.14%), Query Frame = 0 
Query:   34 SDRIEAFAIPDPIRSRRRSVTRTRITMTQAPRLKDCEQLTTRAHTLFQNAAAVTGGVLFGSAISSRGGITKAQAALDPIVSQTYMEQVRDAIPVKTIRGVWRIREYRDKSTGTLCKGRLKMRGFVEEPNKGTLEYMGCNDSKGKG 179
            SD IEAF +P     R  S     ++ T A           R   L    A V GG+  G    + GG T+AQA+ D +++Q+Y+EQVRDAIPVKTIRGVWRIREYRD+    LCKGR+KMRGFVEEPNKGTLEY GCND KGKG
Sbjct:   43 SDGIEAFVLPVSALKRPSSRAMVHLSPTDA-------DTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQAS-DQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQ-PLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKG 178
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BLAST of NO06G04460 vs. NCBI_GenBank
Match: CBN74020.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.5 bits (158), Expect = 2.200e-7
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 0 
Query:   84 AAVTGGVLFGSAISSRGGI---TKAQAALDPIVSQTYMEQVRDAI-PVKTIRGVWRIREYRDKSTGT-----------LCKGRLKMRGFVEEPNKGTLEYMGCNDSKGKG 179
            A   G V     ++ +GG+   T A A L+P+  ++Y E+    + PV T+RG+WR RE R+  +             +C GRL  +GFV    KGT+EY GC D +GKG
Sbjct:  136 AVFIGEVTVSPLLAGKGGVAPPTAAFAELEPLPLKSYSEEFSSGLAPVNTVRGLWRTRETRNDGSALPQEAGRLGRKGICGGRLSFKGFV-GAGKGTVEYKGCGDREGKG 244
The following BLAST results are available for this feature:
BLAST of NO06G04460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005853940.11.100e-3054.48hypothetical protein NGA_0427600 [Nannochloropsis ... [more]
EWM26438.11.100e-3054.48hypothetical protein Naga_100344g5 [Nannochloropsi... [more]
CBN74020.12.200e-736.36expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL088nonsL088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR144ngnoR144Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000023NSK000023Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04460.2NO06G04460.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G04460.1NO06G04460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605195gene_9620Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100344g5gene4088Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04460.2NO06G04460.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G04460.1NO06G04460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04460 ID=NO06G04460|Name=NO06G04460|organism=Nannochloropsis oceanica|type=gene|length=1918bp
ATCACAAGTACACGCACAAAAACACAGGTCTCTCTAACACACGCGGGGGT
TAGAAAGCGCCATGCCTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACA
AGAAGAAgtacgtttgataggaaggaggcaggtcgtggtggaatcgtgtg
caggtatcgaccccctccctccatcccctccctccaccctcacagCAACT
TCCTCTCTTTTGCTGGCACTTTTCCTTGTCCACCTGCTACTGCTGTTCTC
CGATAGAATAGAAGCATTTGCCATTCCAGACCCCATCCGCAGCCGTAGAA
GAAGCGTGACGAGGACAAGGATAACCATGACCCAAGCTCCTCGGCTAAAA
GACTGCGAGCAGCTCACGACACGCGCGCACACCCTCTTCCAAAATGCCGC
CGCGGTGACAGGGGGAGTTCTTTTTGGAAGTGCCATCTCGAGCAGAGGCG
GGATCACGAAGGCTCAGGCTGCCTTGGACCCCATCGTTAGCCAAACGTAC
ATGGAGCAAGTCCGCGACGgtacgttactcctactacttctcgcctctgg
cattccctccctccttccctcctcgtgtttctatctccaaatcaagttta
tatctctcatgcactgaaacttttgaccgttacatctccgttcgtctcac
cccgtccttcctcccttcctccctccctccctccatgtctcctcccagCC
ATCCCCGTCAAAACCATCCGCGGCGTGTGGCGCATCCGGGAATACCGCGA
TAAGAGCACTGGAACGCTCTGCAAAGGACGGCTGAAGATGCGAGgtaggg
aggaaggctgaacgaggaaggaagggtcgaagggaggagacttgagggat
ggaggtaggagggagaaggctggagggacgaggacaggcttgtcggcatt
gtttcagggtttacaggcttaagaggctgattttgacttctaggcttaat
atatataacgtaatgtgcacgtaatttatgtctctacgcagGCTTTGTGG
AGGAGCCGAATAAAGGAACACTGGAGTACATGGGCTGCAACGACAGCAAG
GGAAAAGgtgagggtaaagggtatagggagggagggaggggaggaagaga
ggaagtaaaggaggggaattgatagtcgggtgcatgctgctggttctcaa
gctctcggcttgtaccttcatcttcctcctcctcccaagGGAATTGGTTG
CTCAAGCCCGCGCGAATCGCCAACGGGCAAATACGTTTCTCGGCAAGgta
cgttgagaaatcaagatcaagtctttcgtcccttccctccctccctccct
ccctccctccctccctttcatctcccctcgcaccgactcttctctttgca
cggcgctgaatcctctctctccatacgttcttccttccctccctccctcc
ctccctccctccctccctccctccctccccagATGGAAGGTCCGCTTCTC
AGACGGGGAGTCGCTCATTTACCGGGGCGACGTGCTGGCCGGCGGGAACT
ACGCCAAAGCCACGGCCTCGATCGTGGATGGAGACATCTTGCAGCCCTTC
ACGGGCATTACCGgtagggttcgagggagggagggagggagggaagagac
gatggagtagaaagcatttttttcgtggatgaacccgaccagtcaatggc
tgcctctttgcgaatgtgcctcgttcaactctccaccccctactcccccc
cccctctgcccttcccttcccccttccctccggccgggcacccccacttg
cagGCAATTTGTCCGAGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATC
GAGGTCAGCGACGACCAAGAAAAGCTGTAGAGTAAGGTAGAGAATGAAGA
CAGCACACACAACGCGATACCATCCCGAGCAACTAAAGATAAGGAAACGA
TTGGATCTGAGTGGCCCA
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protein sequence of NO06G04460.2

>NO06G04460.2-protein ID=NO06G04460.2-protein|Name=NO06G04460.2|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPVRRGTPARESTRRTTSSLLLALFLVHLLLLFSDRIEAFAIPDPIRSRR
RSVTRTRITMTQAPRLKDCEQLTTRAHTLFQNAAAVTGGVLFGSAISSRG
GITKAQAALDPIVSQTYMEQVRDAIPVKTIRGVWRIREYRDKSTGTLCKG
RLKMRGFVEEPNKGTLEYMGCNDSKGKGEGKGYREGGRGGREEVKEGN*
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protein sequence of NO06G04460.1

>NO06G04460.1-protein ID=NO06G04460.1-protein|Name=NO06G04460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MPVRRGTPARESTRRTTSSLLLALFLVHLLLLFSDRIEAFAIPDPIRSRR
RSVTRTRITMTQAPRLKDCEQLTTRAHTLFQNAAAVTGGVLFGSAISSRG
GITKAQAALDPIVSQTYMEQVRDAIPVKTIRGVWRIREYRDKSTGTLCKG
RLKMRGFVEEPNKGTLEYMGCNDSKGKGNWLLKPARIANGQIRFSARWKV
RFSDGESLIYRGDVLAGGNYAKATASIVDGDILQPFTGITGNLSERKIGS
FEADLIEVSDDQEKL*
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Synonyms
Publications