|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr6 | genome | chr6:1252968..1254885 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04460.2 vs.
Match: EWM26438.1 (hypothetical protein Naga_100344g5 [Nannochloropsis gaditana]) HSP 1 Score: 150.2 bits (378), Expect = 6.700e-33 Identity = 90/176 (51.14%), Postives = 107/176 (60.80%), Query Frame = 0
Query: 3 VRRGTPARESTRRTTSSLLLALFLVHLLLLFSDRIEAFAIPDPIRSRRRSVTRTRITMTQAPRLKDCEQLTTRAHTLFQNAAAVTGGVLFGSAISSRGGITKAQAALDPIVSQTYMEQVRDAIPVKTIRGVWRIREYRDKSTGTLCKGRLKMRGFVEEPNKGTLEYMGCNDSKGKG 179
+RR A S ++LLL L LLL SD IEAF +P R S ++ T A C L A V GG+ G + GG T+AQA+ D +++Q+Y+EQVRDAIPVKTIRGVWRIREYRD+ LCKGR+KMRGFVEEPNKGTLEY GCND KGKG
Sbjct: 17 IRRRANASSSCFHCVATLLLLL-----LLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCR-------FLLHQLATVAGGIFLGGVTGNVGGHTEAQAS-DQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQ-PLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKG 178
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04460.2 ID=NO06G04460.2|Name=NO06G04460.2|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
ATCACAAGTACACGCACAAAAACACAGGTCTCTCTAACACACGCGGGGGT
TAGAAAGCGCCATGCCTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACA
AGAAGAACAACTTCCTCTCTTTTGCTGGCACTTTTCCTTGTCCACCTGCT
ACTGCTGTTCTCCGATAGAATAGAAGCATTTGCCATTCCAGACCCCATCC
GCAGCCGTAGAAGAAGCGTGACGAGGACAAGGATAACCATGACCCAAGCT
CCTCGGCTAAAAGACTGCGAGCAGCTCACGACACGCGCGCACACCCTCTT
CCAAAATGCCGCCGCGGTGACAGGGGGAGTTCTTTTTGGAAGTGCCATCT
CGAGCAGAGGCGGGATCACGAAGGCTCAGGCTGCCTTGGACCCCATCGTT
AGCCAAACGTACATGGAGCAAGTCCGCGACGCCATCCCCGTCAAAACCAT
CCGCGGCGTGTGGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACGC
TCTGCAAAGGACGGCTGAAGATGCGAGGCTTTGTGGAGGAGCCGAATAAA
GGAACACTGGAGTACATGGGCTGCAACGACAGCAAGGGAAAAGGTGAGGG
TAAAGGGTATAGGGAGGGAGGGAGGGGAGGAAGAGAGGAAGTAAAGGAGG
GGAATTGATAGTCGGGTGCATGCTGCTGGTTCTCAAGCTCTCGGCTTGTA
CCTTCATCTTCCTCCTCCTCCCAAGGGAATTGGTTGCTCAAGCCCGCGCG
AATCGCCAACGGGCAAATACGTTTCTCGGCAAGATGGAAGGTCCGCTTCT
CAGACGGGGAGTCGCTCATTTACCGGGGCGACGTGCTGGCCGGCGGGAAC
TACGCCAAAGCCACGGCCTCGATCGTGGATGGAGACATCTTGCAGCCCTT
CACGGGCATTACCGGCAATTTGTCCGAGAGGAAGATCGGCAGCTTTGAGG
CCGACCTGATCGAGGTCAGCGACGACCAAGAAAAGCTGTAGAGTAAGGTA
GAGAATGAAGACAGCACACACAACGCGATACCATCCCGAGCAACTAAAGA
TAAGGAAACGATTGGATCTGAGTGGCCCA back to topprotein sequence of NO06G04460.2 >NO06G04460.2-protein ID=NO06G04460.2-protein|Name=NO06G04460.2|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPVRRGTPARESTRRTTSSLLLALFLVHLLLLFSDRIEAFAIPDPIRSRR
RSVTRTRITMTQAPRLKDCEQLTTRAHTLFQNAAAVTGGVLFGSAISSRG
GITKAQAALDPIVSQTYMEQVRDAIPVKTIRGVWRIREYRDKSTGTLCKG
RLKMRGFVEEPNKGTLEYMGCNDSKGKGEGKGYREGGRGGREEVKEGN* back to topmRNA from alignment at chr6:1252968..1254885- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04460.2 ID=NO06G04460.2|Name=NO06G04460.2|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp|location=Sequence derived from alignment at chr6:1252968..1254885- (Nannochloropsis oceanica)
ATCACAAGTACACGCACAAAAACACAGGTCTCTCTAACACACGCGGGGGT
TAGAAAGCGCCATGCCTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACA
AGAAGAAGTACGTTTGATAGGAAGGAGGCAGGTCGTGGTGGAATCGTGTG
CAGGTATCGACCCCCTCCCTCCATCCCCTCCCTCCACCCTCACAGCAACT
TCCTCTCTTTTGCTGGCACTTTTCCTTGTCCACCTGCTACTGCTGTTCTC
CGATAGAATAGAAGCATTTGCCATTCCAGACCCCATCCGCAGCCGTAGAA
GAAGCGTGACGAGGACAAGGATAACCATGACCCAAGCTCCTCGGCTAAAA
GACTGCGAGCAGCTCACGACACGCGCGCACACCCTCTTCCAAAATGCCGC
CGCGGTGACAGGGGGAGTTCTTTTTGGAAGTGCCATCTCGAGCAGAGGCG
GGATCACGAAGGCTCAGGCTGCCTTGGACCCCATCGTTAGCCAAACGTAC
ATGGAGCAAGTCCGCGACGGTACGTTACTCCTACTACTTCTCGCCTCTGG
CATTCCCTCCCTCCTTCCCTCCTCGTGTTTCTATCTCCAAATCAAGTTTA
TATCTCTCATGCACTGAAACTTTTGACCGTTACATCTCCGTTCGTCTCAC
CCCGTCCTTCCTCCCTTCCTCCCTCCCTCCCTCCATGTCTCCTCCCAGCC
ATCCCCGTCAAAACCATCCGCGGCGTGTGGCGCATCCGGGAATACCGCGA
TAAGAGCACTGGAACGCTCTGCAAAGGACGGCTGAAGATGCGAGGTAGGG
AGGAAGGCTGAACGAGGAAGGAAGGGTCGAAGGGAGGAGACTTGAGGGAT
GGAGGTAGGAGGGAGAAGGCTGGAGGGACGAGGACAGGCTTGTCGGCATT
GTTTCAGGGTTTACAGGCTTAAGAGGCTGATTTTGACTTCTAGGCTTAAT
ATATATAACGTAATGTGCACGTAATTTATGTCTCTACGCAGGCTTTGTGG
AGGAGCCGAATAAAGGAACACTGGAGTACATGGGCTGCAACGACAGCAAG
GGAAAAGGTGAGGGTAAAGGGTATAGGGAGGGAGGGAGGGGAGGAAGAGA
GGAAGTAAAGGAGGGGAATTGATAGTCGGGTGCATGCTGCTGGTTCTCAA
GCTCTCGGCTTGTACCTTCATCTTCCTCCTCCTCCCAAGGGAATTGGTTG
CTCAAGCCCGCGCGAATCGCCAACGGGCAAATACGTTTCTCGGCAAGGTA
CGTTGAGAAATCAAGATCAAGTCTTTCGTCCCTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTTCATCTCCCCTCGCACCGACTCTTCTCTTTGCA
CGGCGCTGAATCCTCTCTCTCCATACGTTCTTCCTTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGATGGAAGGTCCGCTTCTC
AGACGGGGAGTCGCTCATTTACCGGGGCGACGTGCTGGCCGGCGGGAACT
ACGCCAAAGCCACGGCCTCGATCGTGGATGGAGACATCTTGCAGCCCTTC
ACGGGCATTACCGGTAGGGTTCGAGGGAGGGAGGGAGGGAGGGAAGAGAC
GATGGAGTAGAAAGCATTTTTTTCGTGGATGAACCCGACCAGTCAATGGC
TGCCTCTTTGCGAATGTGCCTCGTTCAACTCTCCACCCCCTACTCCCCCC
CCCCTCTGCCCTTCCCTTCCCCCTTCCCTCCGGCCGGGCACCCCCACTTG
CAGGCAATTTGTCCGAGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATC
GAGGTCAGCGACGACCAAGAAAAGCTGTAGAGTAAGGTAGAGAATGAAGA
CAGCACACACAACGCGATACCATCCCGAGCAACTAAAGATAAGGAAACGA
TTGGATCTGAGTGGCCCA back to topCoding sequence (CDS) from alignment at chr6:1252968..1254885- >NO06G04460.2 ID=NO06G04460.2|Name=NO06G04460.2|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at chr6:1252968..1254885- (Nannochloropsis oceanica)
ATGCCTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGAACAAC
TTCCTCTCTTTTGCTGGCACTTTTCCTTGTCCACCTGCTACTGCTGTTCT
CCGATAGAATAGAAGCATTTGCCATTCCAGACCCCATCCGCAGCCGTAGA
AGAAGCGTGACGAGGACAAGGATAACCATGACCCAAGCTCCTCGGCTAAA
AGACTGCGAGCAGCTCACGACACGCGCGCACACCCTCTTCCAAAATGCCG
CCGCGGTGACAGGGGGAGTTCTTTTTGGAAGTGCCATCTCGAGCAGAGGC
GGGATCACGAAGGCTCAGGCTGCCTTGGACCCCATCGTTAGCCAAACGTA
CATGGAGCAAGTCCGCGACGCCATCCCCGTCAAAACCATCCGCGGCGTGT
GGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACGCTCTGCAAAGGA
CGGCTGAAGATGCGAGGCTTTGTGGAGGAGCCGAATAAAGGAACACTGGA
GTACATGGGCTGCAACGACAGCAAGGGAAAAGGTGAGGGTAAAGGGTATA
GGGAGGGAGGGAGGGGAGGAAGAGAGGAAGTAAAGGAGGGGAATTGA back to top
|