NO06G04360, NO06G04360 (gene) Nannochloropsis oceanica

Overview
NameNO06G04360
Unique NameNO06G04360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2823
Alignment locationchr6:1225377..1228199 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1225377..1228199 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO06G04360 vs. NCBI_GenBank
Match: XP_005854768.1 (hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526] >XP_005855416.1 hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526] >EKU20947.1 hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526] >EKU21595.1 hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 168.7 bits (426), Expect = 3.800e-38
Identity = 107/245 (43.67%), Postives = 131/245 (53.47%), Query Frame = 0 
Query:  169 ALEKDMMCDPAAVDGMMDEMDDIEICATDWARFYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKGRM--MEALQEGVQAGEEEXXEGDAGRWVHVPEFNRLLYRMLGFVGTYGCMQDSDTGMLCAELTVRSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGEMMKTLRLAEQDKVMEGLERDCPGATAAAAASCERSAAGG 412
            A  KD MCDP  VD  +D++D    C   W  FYDR + V++N RT++SQ   I  FC++PCGP+FD  +++FR+ACQEG  RM                XX      W+ VP    L+YRM GF+GT+GC QD+ +G LCAEL VRSLS                              XXXXXXX                FGEMMKTLRL EQ +++EGLER CPGA  AA ASC RSAA G
Sbjct:  166 AKRKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCSSPCGPLFDRQVREFRNACQEGLMRMXXXXXXXXXXXXXXXXXXXXXXXTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLS-ASASANVGTPTGVAWTKIGNGKHRKADREXXXXXXXQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG 409
[Close]
BLAST of NO06G04360 vs. NCBI_GenBank
Match: EWM26447.1 (hypothetical protein Naga_100144g4 [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 1.900e-37
Identity = 113/283 (39.93%), Postives = 143/283 (50.53%), Query Frame = 0 
Query:  131 TGRAAEAIPSVAIEGAEAPETEVPADHLSPKQDVALPTALEKDMMCDPAAVDGMMDEMDDIEICATDWARFYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKGRM--MEALQEGVQAGEEEXXEGDAGRWVHVPEFNRLLYRMLGFVGTYGCMQDSDTGMLCAELTVRSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGEMMKTLRLAEQDKVMEGLERDCPGATAAAAASCERSAAGG 412
            T   + A+P+     A   +  V +   +    +    A  KD MCDP  VD  +D++D    C   W  FYDR + V++N RT++SQ   I  FCA+PCGP+FD  +++FR+ACQEG  RM                XX      W+ VP    L+YRM GF+GT+GC QD+ +G LCAEL VRSLS                              XXXXXXX                FGEMMKTLRL EQ +++EGLER CPGA  AA ASC RSAA G
Sbjct:  139 TATLSAALPTATTLPALLDQDSVVSTVYNQSVQLQKKGAKGKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCASPCGPLFDRQVREFRNACQEGLMRMXXXXXXXXXXXXXXXXXXXXXXXTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLS-ASASANVGTPTGVAWTKIGNGKHRKADREXXXXXXXQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG 420
The following BLAST results are available for this feature:
BLAST of NO06G04360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854768.13.800e-3843.67hypothetical protein NGA_0115702 [Nannochloropsis ... [more]
EWM26447.11.900e-3739.93hypothetical protein Naga_100144g4 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL088nonsL088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR144ngnoR144Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000014NSK000014Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100144g4gene4078Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04360.3NO06G04360.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G04360.2NO06G04360.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G04360.1NO06G04360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04360.3NO06G04360.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G04360.2NO06G04360.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G04360.1NO06G04360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04360 ID=NO06G04360|Name=NO06G04360|organism=Nannochloropsis oceanica|type=gene|length=2823bp
TATGTTTACAAATTTATACATGTTTCTTTGGGTCTTCTACCATTTCTGTA
TGGGAAATTTTATACTTTACAGCAAGGCATCCTGCGGCATTACTGTCCTT
AAATAGTTGGCATTGTTGCCCATCAGGAGTTCGAAAATGCCATCCCCGAG
CTCGAGACGTCTTTCGTACGGGTCAGGCAATTCATCTCCTTCCTCCTTTG
CTCCTGCCACTGCTGCCAATGATGGTGCTGCGACGGGGCGTCTGGGCAGG
ATCTGCCTTTCCTTGTCAATATCATCACCGTGCCCTGGTGTATGCATCCA
ATTTGCACCCCGTTTATCTCCGCCTTCCAATTGCTGTTGCGTAGCTGCAG
GAAGCACAAGGCACAGCGCGAGTGTTACGGCCAGCACGGATAAGCGCCCT
TGGCATGTCCACATGGCTGCGCTATGGGTGGTTGTACGAGAAGCGTGCTG
GTGGGGTTGTGGCCTGTGGATCGTGCGTTGCGTTGCATGTGTCGATGATG
TCGGTGTAAGTGTGTGAGAAAATTGCCTCGCAAGGGCGGATTGATTCTGC
TGCCGCGGGCTTTCGCCCCTGAAGCCACACGCGGCCTGCTAGGGTGGCCC
GGTGTGCCTGTGTTGTGCGTACATGTGTGTGGTAGGGCCAGAAATCACAA
GTGGCAAGCGCAGGAACAGACACGCGGCACAAGCGGCAGACACACCGTTC
GACTTTGTGTCGTGCCATCGCTGTCGAGTGTCGGTCGAGTGCGTCGTTCG
GCTTAAGTCAAAGAAGAATTGCACCAGCAGGTCGGATCGATTGATTTGGC
TTGTTAAAGCACTGTTTGTGTGTCTTGTCCCTTGCTCTTGCACCAAGGGC
AAGAAAACGTGTGTGGCATTATTGTAGCTATACTTACGAATCCAATCAAT
TTGATGAACTAACCGTCCCTGTTTCCGCTCTACCCTGCACTCAACGCAGG
CGCAGCAGCAAACAACAAAAAAGCCCGCCGGACTGCCAACATGCGGCGGC
AGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGTGCTCCTCCGC
CCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCGCAAGAGCCAT
CTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGATATCGCTCCAT
TCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCGACGCCTTGCT
CCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCCAAGCTGCCGT
AGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGCGAGACTCCGC
CTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGCAGCAACAGCA
CCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTGCAGCAGAAGC
AATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAAACAGAAGTCC
CAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCCAACCGCCCTG
GAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCATGATGGACGA
GATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGGTTCTATGACC
GCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATCGCAGGGGGAG
ATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGTTCGACGGCAT
GCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGGAGGATGATGG
AGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGGAGAGGAGGGG
GACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGCTTCTCTATCG
CATGCTCGgtgaggcaattgggagggagggagggaagggaggagaggtgt
gcacgcatctgtgcgcaccccccggtgtgctgcggggccatctcctcgct
tggcctagtcatctcaatccctcctttcagccaactttcatctcctcatc
tgccctccctccctccgtcgccccccacccaagGTTTCGTCGGCACATAT
GGCTGTATGCAGGACAGTGACACAGGCATGCTCTGCGCCGAGCTCACTGT
TCGCTCCCTCTCCTCCTCCGCCAGCGCTCGCAAACCTCCTTCGTATGgta
catatcacattcccctccctccctccctccctccaccctccctccctccc
tccttcctcacgaacttcattcgtctccttcgtatactcacccacgcggg
cattgcctgaccctggacactcatcgcgccttccctaccccccgccctcc
tcccctcctcccaccctcctctctcactttatcccagACGCTGCCTCCTC
CAGCGGCTCCACGAAAAAGAATGAAAGCAGCCCCGAAACCAAGAAGCCAA
CTGCCGCTGCGGAGGAGGCCCGAGTCAAGCAGCAGAAATGCGCCTACTAC
ACCTCATGTTGCTTTGGGGAGATGATGAAGACCTTGCGGCTGGCCGAGCA
GGTAGGTAGGTGGGGAGAAAGGGAGGAAGGGAGGGAGGGAGGGAGGGGAG
GGGTGTGGTTCAAGAAGGCTGTCGAGGATACGTGACGGTTACTCACTCGG
ATACATTTCATTTGTTTATCTATCTCTTTTTGTGGGTGTTACAGGATAAG
GTAATGGAGGGCCTGGAACGGGACTGTCCAGGGGCTACGGCTGCTGCGGC
TGCATCCTGTGAGAGGAGTGCGGCGGGAGGGAGATGAGGGGAAGGGAGGG
AGATGAGGGGAAGGGAGGGAGGGAGGAGGAAGGGAGGGAGATGAGGGGAA
GGGAGGGAGATGAGGGGAAGGGA
back to top

protein sequence of NO06G04360.3

>NO06G04360.3-protein ID=NO06G04360.3-protein|Name=NO06G04360.3|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MRRQPPFYCSHLLLLHVLLRPAVLLLTFIPVTAARAIYTTESEPRAATAD
IAPFDVYFEQTTVGLLRRLAPADDRADRLVTKAQAAVESAPVSVPSDATG
ETPPAGTDLTIPANQVAATAPAAPIAKPLPTGRAAEAIPSVAIEGAEAPE
TEVPADHLSPKQDVALPTALEKDMMCDPAAVDGMMDEMDDIEICATDWAR
FYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKG
RMMEALQEGVQAGEEEGEEGDAGRWVHVPEFNRLLYRMLGFVGTYGCMQD
SDTGMLCAELTVRSLSSSASARKPPSYDAASSSGSTKKNESSPETKKPTA
AAEEARVKQQKCAYYTSCCFGEMMKTLRLAEQVGRWGEREEGREGGRGGV
WFKKAVEDT*
back to top

protein sequence of NO06G04360.2

>NO06G04360.2-protein ID=NO06G04360.2-protein|Name=NO06G04360.2|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MRRQPPFYCSHLLLLHVLLRPAVLLLTFIPVTAARAIYTTESEPRAATAD
IAPFDVYFEQTTVGLLRRLAPADDRADRLVTKAQAAVESAPVSVPSDATG
ETPPAGTDLTIPANQVAATAPAAPIAKPLPTGRAAEAIPSVAIEGAEAPE
TEVPADHLSPKQDVALPTALEKDMMCDPAAVDGMMDEMDDIEICATDWAR
FYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKG
RMMEALQEGVQAGEEEGEEGDAGRWVHVPEFNRLLYRMLGEAIGREGGKG
GEVCTHLCAPPGVLRGHLLAWPSHLNPSFQPTFISSSALPPSVAPHPRFR
RHIWLYAGQ*
back to top

protein sequence of NO06G04360.1

>NO06G04360.1-protein ID=NO06G04360.1-protein|Name=NO06G04360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MRRQPPFYCSHLLLLHVLLRPAVLLLTFIPVTAARAIYTTESEPRAATAD
IAPFDVYFEQTTVGLLRRLAPADDRADRLVTKAQAAVESAPVSVPSDATG
ETPPAGTDLTIPANQVAATAPAAPIAKPLPTGRAAEAIPSVAIEGAEAPE
TEVPADHLSPKQDVALPTALEKDMMCDPAAVDGMMDEMDDIEICATDWAR
FYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKG
RMMEALQEGVQAGEEEGEEGDAGRWVHVPEFNRLLYRMLGFVGTYGCMQD
SDTGMLCAELTVRSLSSSASARKPPSYDAASSSGSTKKNESSPETKKPTA
AAEEARVKQQKCAYYTSCCFGEMMKTLRLAEQDKVMEGLERDCPGATAAA
AASCERSAAGGR*
back to top
Synonyms
Publications