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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1225377..1228199 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04360.2 vs.
Match: XP_005854768.1 (hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526]; XP_005855416.1 hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526]; EKU20947.1 hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526]; EKU21595.1 hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 122.9 bits (307), Expect = 2.100e-24 Identity = 65/143 (45.45%), Postives = 84/143 (58.74%), Query Frame = 0
Query: 169 ALEKDMMCDPAAVDGMMDEMDDIEICATDWARFYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKGRMMEALQEGVQAGEEEGE--EGDAGRWVHVPEFNRLLYRMLGEAIGREGGKGGEVCTHLCA 310
A KD MCDP VD +D++D C W FYDR + V++N RT++SQ I FC++PCGP+FD +++FR+ACQEG RM E E + EEE E EG+ G W+ VP L+YRM G IG G V LCA
Sbjct: 166 AKRKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCSSPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPSEELLIYRMTG-FIGTFGCAQDTVSGRLCA 307
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04360.2 ID=NO06G04360.2|Name=NO06G04360.2|organism=Nannochloropsis oceanica|type=mRNA|length=2490bp TATGTTTACAAATTTATACATGTTTCTTTGGGTCTTCTACCATTTCTGTA TGGGAAATTTTATACTTTACAGCAAGGCATCCTGCGGCATTACTGTCCTT AAATAGTTGGCATTGTTGCCCATCAGGAGTTCGAAAATGCCATCCCCGAG CTCGAGACGTCTTTCGTACGGGTCAGGCAATTCATCTCCTTCCTCCTTTG CTCCTGCCACTGCTGCCAATGATGGTGCTGCGACGGGGCGTCTGGGCAGG ATCTGCCTTTCCTTGTCAATATCATCACCGTGCCCTGGTGTATGCATCCA ATTTGCACCCCGTTTATCTCCGCCTTCCAATTGCTGTTGCGTAGCTGCAG GAAGCACAAGGCACAGCGCGAGTGTTACGGCCAGCACGGATAAGCGCCCT TGGCATGTCCACATGGCTGCGCTATGGGTGGTTGTACGAGAAGCGTGCTG GTGGGGTTGTGGCCTGTGGATCGTGCGTTGCGTTGCATGTGTCGATGATG TCGGTGTAAGTGTGTGAGAAAATTGCCTCGCAAGGGCGGATTGATTCTGC TGCCGCGGGCTTTCGCCCCTGAAGCCACACGCGGCCTGCTAGGGTGGCCC GGTGTGCCTGTGTTGTGCGTACATGTGTGTGGTAGGGCCAGAAATCACAA GTGGCAAGCGCAGGAACAGACACGCGGCACAAGCGGCAGACACACCGTTC GACTTTGTGTCGTGCCATCGCTGTCGAGTGTCGGTCGAGTGCGTCGTTCG GCTTAAGTCAAAGAAGAATTGCACCAGCAGGTCGGATCGATTGATTTGGC TTGTTAAAGCACTGTTTGTGTGTCTTGTCCCTTGCTCTTGCACCAAGGGC AAGAAAACGTGTGTGGCATTATTGTAGCTATACTTACGAATCCAATCAAT TTGATGAACTAACCGTCCCTGTTTCCGCTCTACCCTGCACTCAACGCAGG CGCAGCAGCAAACAACAAAAAAGCCCGCCGGACTGCCAACATGCGGCGGC AGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGTGCTCCTCCGC CCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCGCAAGAGCCAT CTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGATATCGCTCCAT TCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCGACGCCTTGCT CCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCCAAGCTGCCGT AGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGCGAGACTCCGC CTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGCAGCAACAGCA CCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTGCAGCAGAAGC AATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAAACAGAAGTCC CAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCCAACCGCCCTG GAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCATGATGGACGA GATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGGTTCTATGACC GCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATCGCAGGGGGAG ATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGTTCGACGGCAT GCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGGAGGATGATGG AGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGGAGAGGAGGGG GACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGCTTCTCTATCG CATGCTCGGTGAGGCAATTGGGAGGGAGGGAGGGAAGGGAGGAGAGGTGT GCACGCATCTGTGCGCACCCCCCGGTGTGCTGCGGGGCCATCTCCTCGCT TGGCCTAGTCATCTCAATCCCTCCTTTCAGCCAACTTTCATCTCCTCATC TGCCCTCCCTCCCTCCGTCGCCCCCCACCCAAGGTTTCGTCGGCACATAT GGCTGTATGCAGGACAGTGACACAGGCATGCTCTGCGCCGAGCTCACTGT TCGCTCCCTCTCCTCCTCCGCCAGCGCTCGCAAACCTCCTTCGTATGACG CTGCCTCCTCCAGCGGCTCCACGAAAAAGAATGAAAGCAGCCCCGAAACC AAGAAGCCAACTGCCGCTGCGGAGGAGGCCCGAGTCAAGCAGCAGAAATG CGCCTACTACACCTCATGTTGCTTTGGGGAGATGATGAAGACCTTGCGGC TGGCCGAGCAGGATAAGGTAATGGAGGGCCTGGAACGGGACTGTCCAGGG GCTACGGCTGCTGCGGCTGCATCCTGTGAGAGGAGTGCGGCGGGAGGGAG ATGAGGGGAAGGGAGGGAGATGAGGGGAAGGGAGGGAGGGAGGAGGAAGG GAGGGAGATGAGGGGAAGGGAGGGAGATGAGGGGAAGGGA back to topprotein sequence of NO06G04360.2 >NO06G04360.2-protein ID=NO06G04360.2-protein|Name=NO06G04360.2|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp MRRQPPFYCSHLLLLHVLLRPAVLLLTFIPVTAARAIYTTESEPRAATAD IAPFDVYFEQTTVGLLRRLAPADDRADRLVTKAQAAVESAPVSVPSDATG ETPPAGTDLTIPANQVAATAPAAPIAKPLPTGRAAEAIPSVAIEGAEAPE TEVPADHLSPKQDVALPTALEKDMMCDPAAVDGMMDEMDDIEICATDWAR FYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKG RMMEALQEGVQAGEEEGEEGDAGRWVHVPEFNRLLYRMLGEAIGREGGKG GEVCTHLCAPPGVLRGHLLAWPSHLNPSFQPTFISSSALPPSVAPHPRFR RHIWLYAGQ* back to topmRNA from alignment at chr6:1225377..1228199- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04360.2 ID=NO06G04360.2|Name=NO06G04360.2|organism=Nannochloropsis oceanica|type=mRNA|length=2823bp|location=Sequence derived from alignment at chr6:1225377..1228199- (Nannochloropsis oceanica) TATGTTTACAAATTTATACATGTTTCTTTGGGTCTTCTACCATTTCTGTA
TGGGAAATTTTATACTTTACAGCAAGGCATCCTGCGGCATTACTGTCCTT
AAATAGTTGGCATTGTTGCCCATCAGGAGTTCGAAAATGCCATCCCCGAG
CTCGAGACGTCTTTCGTACGGGTCAGGCAATTCATCTCCTTCCTCCTTTG
CTCCTGCCACTGCTGCCAATGATGGTGCTGCGACGGGGCGTCTGGGCAGG
ATCTGCCTTTCCTTGTCAATATCATCACCGTGCCCTGGTGTATGCATCCA
ATTTGCACCCCGTTTATCTCCGCCTTCCAATTGCTGTTGCGTAGCTGCAG
GAAGCACAAGGCACAGCGCGAGTGTTACGGCCAGCACGGATAAGCGCCCT
TGGCATGTCCACATGGCTGCGCTATGGGTGGTTGTACGAGAAGCGTGCTG
GTGGGGTTGTGGCCTGTGGATCGTGCGTTGCGTTGCATGTGTCGATGATG
TCGGTGTAAGTGTGTGAGAAAATTGCCTCGCAAGGGCGGATTGATTCTGC
TGCCGCGGGCTTTCGCCCCTGAAGCCACACGCGGCCTGCTAGGGTGGCCC
GGTGTGCCTGTGTTGTGCGTACATGTGTGTGGTAGGGCCAGAAATCACAA
GTGGCAAGCGCAGGAACAGACACGCGGCACAAGCGGCAGACACACCGTTC
GACTTTGTGTCGTGCCATCGCTGTCGAGTGTCGGTCGAGTGCGTCGTTCG
GCTTAAGTCAAAGAAGAATTGCACCAGCAGGTCGGATCGATTGATTTGGC
TTGTTAAAGCACTGTTTGTGTGTCTTGTCCCTTGCTCTTGCACCAAGGGC
AAGAAAACGTGTGTGGCATTATTGTAGCTATACTTACGAATCCAATCAAT
TTGATGAACTAACCGTCCCTGTTTCCGCTCTACCCTGCACTCAACGCAGG
CGCAGCAGCAAACAACAAAAAAGCCCGCCGGACTGCCAACATGCGGCGGC
AGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGTGCTCCTCCGC
CCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCGCAAGAGCCAT
CTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGATATCGCTCCAT
TCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCGACGCCTTGCT
CCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCCAAGCTGCCGT
AGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGCGAGACTCCGC
CTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGCAGCAACAGCA
CCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTGCAGCAGAAGC
AATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAAACAGAAGTCC
CAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCCAACCGCCCTG
GAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCATGATGGACGA
GATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGGTTCTATGACC
GCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATCGCAGGGGGAG
ATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGTTCGACGGCAT
GCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGGAGGATGATGG
AGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGGAGAGGAGGGG
GACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGCTTCTCTATCG
CATGCTCGGTGAGGCAATTGGGAGGGAGGGAGGGAAGGGAGGAGAGGTGT
GCACGCATCTGTGCGCACCCCCCGGTGTGCTGCGGGGCCATCTCCTCGCT
TGGCCTAGTCATCTCAATCCCTCCTTTCAGCCAACTTTCATCTCCTCATC
TGCCCTCCCTCCCTCCGTCGCCCCCCACCCAAGGTTTCGTCGGCACATAT
GGCTGTATGCAGGACAGTGACACAGGCATGCTCTGCGCCGAGCTCACTGT
TCGCTCCCTCTCCTCCTCCGCCAGCGCTCGCAAACCTCCTTCGTATGGTA
CATATCACATTCCCCTCCCTCCCTCCCTCCCTCCACCCTCCCTCCCTCCC
TCCTTCCTCACGAACTTCATTCGTCTCCTTCGTATACTCACCCACGCGGG
CATTGCCTGACCCTGGACACTCATCGCGCCTTCCCTACCCCCCGCCCTCC
TCCCCTCCTCCCACCCTCCTCTCTCACTTTATCCCAGACGCTGCCTCCTC
CAGCGGCTCCACGAAAAAGAATGAAAGCAGCCCCGAAACCAAGAAGCCAA
CTGCCGCTGCGGAGGAGGCCCGAGTCAAGCAGCAGAAATGCGCCTACTAC
ACCTCATGTTGCTTTGGGGAGATGATGAAGACCTTGCGGCTGGCCGAGCA
GGTAGGTAGGTGGGGAGAAAGGGAGGAAGGGAGGGAGGGAGGGAGGGGAG
GGGTGTGGTTCAAGAAGGCTGTCGAGGATACGTGACGGTTACTCACTCGG
ATACATTTCATTTGTTTATCTATCTCTTTTTGTGGGTGTTACAGGATAAG
GTAATGGAGGGCCTGGAACGGGACTGTCCAGGGGCTACGGCTGCTGCGGC
TGCATCCTGTGAGAGGAGTGCGGCGGGAGGGAGATGAGGGGAAGGGAGGG
AGATGAGGGGAAGGGAGGGAGGGAGGAGGAAGGGAGGGAGATGAGGGGAA
GGGAGGGAGATGAGGGGAAGGGA back to topCoding sequence (CDS) from alignment at chr6:1225377..1228199- >NO06G04360.2 ID=NO06G04360.2|Name=NO06G04360.2|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr6:1225377..1228199- (Nannochloropsis oceanica) ATGCGGCGGCAGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGT GCTCCTCCGCCCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCG CAAGAGCCATCTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGAT ATCGCTCCATTCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCG ACGCCTTGCTCCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCC AAGCTGCCGTAGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGC GAGACTCCGCCTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGC AGCAACAGCACCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTG CAGCAGAAGCAATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAA ACAGAAGTCCCAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCC AACCGCCCTGGAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCA TGATGGACGAGATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGG TTCTATGACCGCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATC GCAGGGGGAGATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGT TCGACGGCATGCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGG AGGATGATGGAGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGG AGAGGAGGGGGACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGC TTCTCTATCGCATGCTCGGTGAGGCAATTGGGAGGGAGGGAGGGAAGGGA GGAGAGGTGTGCACGCATCTGTGCGCACCCCCCGGTGTGCTGCGGGGCCA TCTCCTCGCTTGGCCTAGTCATCTCAATCCCTCCTTTCAGCCAACTTTCA TCTCCTCATCTGCCCTCCCTCCCTCCGTCGCCCCCCACCCAAGGTTTCGT CGGCACATATGGCTGTATGCAGGACAGTGA back to top
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